Wall clock time and date at job start Tue Mar 31 2020 07:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46597 * 2 1 4 4 C 1.52999 * 109.47445 * 120.00212 * 2 1 3 5 5 N 1.46494 * 109.47291 * 175.00304 * 4 2 1 6 6 C 1.34775 * 119.99869 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99730 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.47052 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00025 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00080 * 0.02562 * 10 9 8 12 12 C 1.38807 * 120.00100 * 179.97438 * 10 9 8 13 13 N 1.31622 * 119.99884 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99651 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47127 * 89.99996 * 14 12 10 16 16 H 1.48508 * 109.46660 * 209.99658 * 14 12 10 17 17 H 1.48497 * 109.47017 * 329.99273 * 14 12 10 18 18 N 1.46495 * 109.47165 * 240.00471 * 2 1 3 19 19 C 1.34778 * 120.00541 * 84.99578 * 18 2 1 20 20 O 1.21293 * 119.99550 * 0.02562 * 19 18 2 21 21 C 1.50693 * 120.00469 * 179.97438 * 19 18 2 22 22 H 1.09006 * 110.43588 * 302.54333 * 21 19 18 23 23 C 1.54627 * 110.48677 * 180.02562 * 21 19 18 24 24 C 1.54485 * 101.76594 * 266.11979 * 23 21 19 25 25 N 1.46769 * 105.47030 * 334.58477 * 24 23 21 26 26 C 1.34417 * 111.30165 * 17.01252 * 25 24 23 27 27 O 1.21279 * 124.94464 * 179.62255 * 26 25 24 28 28 H 1.09001 * 109.47539 * 60.00322 * 1 2 3 29 29 H 1.09010 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47504 * 299.99686 * 1 2 3 31 31 H 1.09001 * 109.46543 * 295.00284 * 4 2 1 32 32 H 1.08999 * 109.46749 * 55.00135 * 4 2 1 33 33 H 0.97000 * 119.99889 * 0.02562 * 5 4 2 34 34 H 1.09004 * 109.47252 * 300.00076 * 8 6 5 35 35 H 1.09005 * 109.47400 * 59.99909 * 8 6 5 36 36 H 0.97001 * 119.99953 * 180.02562 * 13 12 10 37 37 H 0.96998 * 120.00004 * 264.99349 * 18 2 1 38 38 H 1.09000 * 110.97423 * 24.23952 * 23 21 19 39 39 H 1.08997 * 110.97122 * 148.00326 * 23 21 19 40 40 H 1.08998 * 110.24371 * 93.58343 * 24 23 21 41 41 H 1.08997 * 110.24407 * 215.58801 * 24 23 21 42 42 H 0.97000 * 124.34665 * 197.03581 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4282 2.1911 7 8 3.5701 -1.8824 3.1402 8 6 5.6751 -1.5357 2.1310 9 16 6.2785 -2.3891 3.6087 10 6 8.0102 -2.3762 3.2839 11 1 8.3865 -1.9228 2.3787 12 6 8.8910 -2.9477 4.1918 13 7 10.1847 -2.9375 3.9494 14 14 8.2402 -3.7312 5.7577 15 1 7.9533 -5.1670 5.5105 16 1 9.2573 -3.6075 6.8327 17 1 6.9929 -3.0417 6.1748 18 7 2.0183 -0.6905 -1.1962 19 6 2.1470 -0.0182 -2.3572 20 8 1.8589 1.1588 -2.4115 21 6 2.6499 -0.7283 -3.5875 22 1 3.6308 -1.1654 -3.4004 23 6 2.7117 0.2454 -4.7871 24 6 1.3421 0.0037 -5.4599 25 7 0.9523 -1.3582 -5.0760 26 6 1.6670 -1.7924 -4.0236 27 8 1.5423 -2.8793 -3.5001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7516 -0.1583 2.1369 32 1 1.6055 -1.7198 1.2950 33 1 3.9824 -0.4620 0.4319 34 1 5.9638 -2.0987 1.2434 35 1 6.1094 -0.5370 2.0849 36 1 10.8001 -3.3372 4.5837 37 1 2.2491 -1.6316 -1.1527 38 1 2.8029 1.2772 -4.4478 39 1 3.5283 -0.0160 -5.4600 40 1 0.6098 0.7231 -5.0935 41 1 1.4358 0.0780 -6.5433 42 1 0.2673 -1.8783 -5.5245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494604169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:56 Heat of formation + Delta-G solvation = -114.033276 kcal Electronic energy + Delta-G solvation = -25428.780340 eV Core-core repulsion = 21534.760139 eV Total energy + Delta-G solvation = -3894.020201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.46509 -39.76550 -39.05673 -37.07482 -36.34763 -33.81827 -32.44662 -32.39418 -31.19772 -29.54090 -28.28703 -26.09294 -25.54520 -23.56313 -22.10064 -21.33279 -20.52549 -20.42688 -18.35349 -17.99732 -17.80527 -16.83799 -16.42410 -16.20345 -16.05748 -15.43216 -15.11002 -14.97893 -14.94500 -14.31155 -14.12340 -13.99822 -13.90061 -13.61589 -13.29335 -13.15810 -13.02608 -12.84313 -12.79085 -12.37870 -12.05451 -11.93024 -11.87818 -11.37523 -11.26610 -11.01039 -10.61894 -10.58500 -10.25939 -9.86732 -9.66111 -9.63244 -9.51406 -9.08045 -8.99586 -8.51011 -6.92512 -6.29329 -4.01138 1.79732 2.16193 2.63608 2.75620 2.88514 2.94121 3.28599 3.33775 3.50417 3.63394 3.72251 3.84701 4.16945 4.31489 4.32926 4.45437 4.57350 4.70428 4.77578 4.88908 4.92447 5.02482 5.09801 5.23505 5.27676 5.31327 5.35633 5.47125 5.54075 5.65304 5.74715 5.83898 5.99391 6.04947 6.17108 6.40740 6.42835 7.01692 7.52820 7.64247 7.71151 7.93735 8.41142 8.43480 9.16856 10.79911 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002416 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.318917 B =11584.622555 C =12329.245717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.099 0.901 4 C 0.113 3.887 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.517 6.517 8 C -0.124 4.124 9 S -0.141 6.141 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.719 5.719 19 C 0.535 3.465 20 O -0.529 6.529 21 C -0.155 4.155 22 H 0.137 0.863 23 C -0.120 4.120 24 C 0.099 3.901 25 N -0.727 5.727 26 C 0.530 3.470 27 O -0.519 6.519 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.410 0.590 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 8.560 -20.799 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.117 0.883 4 C -0.012 4.012 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.392 6.392 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.371 5.371 19 C 0.319 3.681 20 O -0.405 6.405 21 C -0.179 4.179 22 H 0.154 0.846 23 C -0.157 4.157 24 C -0.026 4.026 25 N -0.383 5.383 26 C 0.314 3.686 27 O -0.394 6.394 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.246 0.754 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -21.079 8.096 -18.825 29.398 hybrid contribution 0.828 -0.375 -1.091 1.420 sum -20.251 7.721 -19.916 29.434 Atomic orbital electron populations 1.22103 0.93906 1.02859 1.03068 1.21303 0.95101 0.97818 0.83117 0.88344 1.21629 0.81017 1.01520 0.97009 1.45938 1.06847 1.61907 1.24584 1.20292 0.89476 0.76809 0.81702 1.90707 1.69854 1.46089 1.32503 1.23279 0.93286 1.05550 1.05387 1.84795 1.06947 1.75380 1.24343 1.22314 0.88635 1.44692 1.11253 0.89386 1.24717 0.94104 0.94529 0.97982 1.69935 1.01559 1.43476 1.36718 0.86732 0.80799 0.81234 0.83067 1.19201 1.19943 1.15916 1.46147 1.66762 1.14835 1.09372 1.19729 0.77590 0.86931 0.83827 1.90719 1.49657 1.15456 1.84645 1.22195 1.02086 0.97827 0.95808 0.84553 1.22623 0.97156 1.01485 0.94485 1.22168 0.96847 0.82953 1.00605 1.46167 1.40562 1.17776 1.33807 1.20281 0.81461 0.86803 0.80038 1.90824 1.68602 1.22172 1.57759 0.91706 0.91904 0.90875 0.89749 0.90730 0.76620 0.88482 0.88440 0.91931 0.75372 0.87092 0.88971 0.90379 0.89695 0.74677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 2 C 0.13 1.10 2.73 -67.93 -0.19 0.92 16 3 H 0.10 0.89 7.58 -51.93 -0.39 0.50 16 4 C 0.11 1.15 5.23 -4.05 -0.02 1.13 16 5 N -0.74 -8.87 5.39 -60.30 -0.32 -9.19 16 6 C 0.53 9.14 7.85 -10.99 -0.09 9.06 16 7 O -0.52 -10.89 15.86 5.56 0.09 -10.81 16 8 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 10 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 11 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 12 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -26.55 13.97 55.49 0.78 -25.77 16 14 Si 0.86 21.79 27.74 -169.99 -4.72 17.07 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.24 -5.97 6.74 56.52 0.38 -5.58 16 18 N -0.72 -6.00 4.50 -53.81 -0.24 -6.25 16 19 C 0.53 4.68 7.12 -10.99 -0.08 4.60 16 20 O -0.53 -5.78 15.14 5.55 0.08 -5.70 16 21 C -0.15 -1.05 3.33 -91.79 -0.31 -1.36 16 22 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 23 C -0.12 -0.55 6.50 -25.10 -0.16 -0.71 16 24 C 0.10 0.38 7.78 -3.12 -0.02 0.36 16 25 N -0.73 -4.17 6.24 -59.20 -0.37 -4.54 16 26 C 0.53 4.55 7.72 -10.86 -0.08 4.47 16 27 O -0.52 -6.41 18.03 5.56 0.10 -6.31 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 3.95 8.14 -40.82 -0.33 3.62 16 34 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 35 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.41 3.48 8.60 -40.82 -0.35 3.13 16 38 H 0.11 0.59 6.96 -51.93 -0.36 0.23 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.41 1.79 8.96 -40.82 -0.37 1.42 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -37.13 371.94 -7.18 -44.31 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.03 Total: 3.64 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.16 Total: 3.48 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.16 Total: -45.75 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.27 Total: -22.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.13 -7.18 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494604169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.722 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds