Wall clock time and date at job start Tue Mar 31 2020 07:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.50708 * 109.47042 * 240.00174 * 2 1 3 5 5 N 1.34777 * 119.99757 * 59.99721 * 4 2 1 6 6 O 1.21278 * 119.99797 * 239.99889 * 4 2 1 7 7 C 1.50701 * 109.47515 * 120.00099 * 2 1 3 8 8 O 1.21287 * 119.99731 * 119.99572 * 7 2 1 9 9 N 1.34767 * 119.99869 * 300.00480 * 7 2 1 10 10 C 1.46500 * 119.99895 * 179.97438 * 9 7 2 11 11 C 1.53501 * 114.20747 * 204.99407 * 10 9 7 12 12 N 1.47065 * 87.98741 * 220.14872 * 11 10 9 13 13 C 1.34775 * 136.05752 * 207.08848 * 12 11 10 14 14 O 1.21276 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47116 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00102 * 179.72368 * 17 16 15 20 20 N 1.31634 * 120.00298 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47644 * 89.99884 * 21 19 17 23 23 H 1.48506 * 109.47143 * 209.99830 * 21 19 17 24 24 H 1.48501 * 109.47120 * 329.99545 * 21 19 17 25 25 C 1.47067 * 87.88377 * 27.34414 * 12 11 10 26 26 H 1.08997 * 109.46908 * 299.99671 * 1 2 3 27 27 H 1.08999 * 109.47046 * 59.99643 * 1 2 3 28 28 H 1.09004 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47608 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47396 * 300.00142 * 3 2 1 31 31 H 1.09004 * 109.47224 * 60.00131 * 3 2 1 32 32 H 0.97003 * 120.00469 * 0.02562 * 5 4 2 33 33 H 0.97005 * 119.99563 * 179.97438 * 5 4 2 34 34 H 0.97001 * 120.00444 * 359.97438 * 9 7 2 35 35 H 1.09001 * 113.28417 * 338.06104 * 10 9 7 36 36 H 1.09001 * 113.46643 * 105.36573 * 11 10 9 37 37 H 1.09004 * 113.51834 * 334.94016 * 11 10 9 38 38 H 1.09001 * 109.47434 * 59.99478 * 15 13 12 39 39 H 1.08999 * 109.47072 * 299.99957 * 15 13 12 40 40 H 0.96995 * 120.00138 * 180.02562 * 20 19 17 41 41 H 1.09001 * 113.47005 * 87.43764 * 25 12 11 42 42 H 1.09003 * 113.46723 * 217.87945 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 1.7067 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1193 7 6 2.0324 -0.7104 1.2304 8 8 2.7297 -1.6966 1.1190 9 7 1.7068 -0.2501 2.4545 10 6 2.1948 -0.9410 3.6506 11 6 1.3233 -0.7332 4.8970 12 7 2.5624 -0.6269 5.6820 13 6 2.9259 -0.8625 6.9583 14 8 2.1080 -1.2680 7.7567 15 6 4.3483 -0.6209 7.3935 16 16 4.5191 -1.0259 9.1493 17 6 6.2274 -0.6628 9.3823 18 1 6.8212 -0.3046 8.5543 19 6 6.8086 -0.8310 10.6314 20 7 8.0850 -0.5603 10.8054 21 14 5.7798 -1.4432 12.0654 22 1 5.8334 -2.9263 12.1157 23 1 6.3159 -0.8853 13.3330 24 1 4.3723 -1.0044 11.8877 25 6 3.2287 -0.1441 4.4631 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.1493 0.5390 -2.5436 33 1 2.0303 -0.7070 -3.2467 34 1 1.1494 0.5388 2.5436 35 1 2.4705 -1.9793 3.4661 36 1 0.7196 -1.6035 5.1546 37 1 0.7437 0.1897 4.8736 38 1 4.6034 0.4271 7.2361 39 1 5.0191 -1.2499 6.8082 40 1 8.4912 -0.6782 11.6782 41 1 3.1519 0.9343 4.3244 42 1 4.2485 -0.5125 4.3509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498243665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:28 Heat of formation + Delta-G solvation = -67.638094 kcal Electronic energy + Delta-G solvation = -25249.311306 eV Core-core repulsion = 21357.302951 eV Total energy + Delta-G solvation = -3892.008355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.33370 -40.35975 -38.74077 -37.56281 -35.68372 -33.97195 -33.38381 -32.43780 -30.42410 -28.12617 -27.84296 -26.17362 -25.59370 -24.94421 -23.12190 -21.43814 -20.16083 -19.16160 -18.31793 -17.75431 -17.29229 -16.84411 -16.62070 -16.31972 -15.84756 -15.45316 -15.12530 -14.94451 -14.63131 -14.55150 -14.39112 -14.01208 -13.44199 -13.30963 -13.00477 -12.94841 -12.89804 -12.83468 -12.81061 -12.76090 -12.59795 -11.95760 -11.91025 -11.36829 -11.25677 -11.00553 -10.62594 -10.44522 -10.07252 -9.87534 -9.75112 -9.57433 -9.38444 -9.00306 -8.78026 -8.51532 -6.93021 -6.28586 -4.00925 2.15143 2.27869 2.36773 2.66033 2.89205 3.04683 3.21314 3.33887 3.50493 3.56797 3.95909 4.01766 4.04939 4.29109 4.32904 4.42234 4.43506 4.66661 4.78972 4.80861 4.96116 4.98795 4.99930 5.00948 5.10330 5.13592 5.31253 5.35857 5.43618 5.44303 5.61906 5.75978 5.79833 6.01288 6.10341 6.35190 6.83697 7.05395 7.67558 7.80724 7.94432 7.96113 8.34983 8.42223 9.17261 10.80588 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.002067 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.450644 B =13546.215732 C =13995.816247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.524 3.476 5 N -0.857 5.857 6 O -0.493 6.493 7 C 0.523 3.477 8 O -0.486 6.486 9 N -0.717 5.717 10 C 0.112 3.888 11 C 0.098 3.902 12 N -0.648 5.648 13 C 0.566 3.434 14 O -0.513 6.513 15 C -0.116 4.116 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.089 0.911 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.086 3.914 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.398 0.602 33 H 0.404 0.596 34 H 0.401 0.599 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 8.065 -28.366 34.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.198 4.198 4 C 0.305 3.695 5 N -0.423 5.423 6 O -0.364 6.364 7 C 0.306 3.694 8 O -0.356 6.356 9 N -0.371 5.371 10 C 0.006 3.994 11 C -0.026 4.026 12 N -0.387 5.387 13 C 0.355 3.645 14 O -0.387 6.387 15 C -0.266 4.266 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.039 4.039 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.227 0.773 33 H 0.235 0.765 34 H 0.236 0.764 35 H 0.152 0.848 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.701 6.014 -26.601 33.069 hybrid contribution 0.392 1.075 -0.572 1.279 sum -18.309 7.089 -27.173 33.524 Atomic orbital electron populations 1.21869 0.90256 1.03821 1.03835 1.20907 0.98940 0.97868 0.93429 1.21874 1.02684 0.91436 1.03838 1.19859 0.80564 0.84577 0.84481 1.43814 1.56610 1.34010 1.07834 1.90929 1.35115 1.24548 1.85832 1.19876 0.80874 0.84799 0.83814 1.90898 1.34757 1.24337 1.85611 1.45731 1.54411 1.32132 1.04840 1.22902 0.95197 0.98857 0.82419 1.23214 0.89860 1.02636 0.86885 1.49268 1.13257 1.67783 1.08420 1.19874 0.90093 0.76171 0.78313 1.90720 1.53267 1.44647 1.50055 1.23217 0.94467 1.05555 1.03364 1.84779 1.15401 1.88108 1.03206 1.22297 0.92168 1.51808 1.00575 0.89337 1.24715 0.94642 0.93769 0.98202 1.69938 1.10643 1.46608 1.24418 0.86731 0.82782 0.80325 0.81988 1.19160 1.19911 1.15939 1.23559 0.99367 0.99576 0.81433 0.90566 0.90783 0.91221 0.91119 0.90780 0.90558 0.77345 0.76498 0.76413 0.84849 0.89610 0.89740 0.88473 0.88376 0.91919 0.89461 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.36 8.27 37.16 0.31 -0.05 16 2 C -0.10 -0.58 0.72 -156.81 -0.11 -0.69 16 3 C -0.14 -0.39 8.27 37.16 0.31 -0.08 16 4 C 0.52 4.34 6.75 -10.98 -0.07 4.26 16 5 N -0.86 -3.05 8.66 31.22 0.27 -2.78 16 6 O -0.49 -7.12 15.02 -18.96 -0.28 -7.41 16 7 C 0.52 4.82 6.47 -10.99 -0.07 4.75 16 8 O -0.49 -7.26 13.77 -18.97 -0.26 -7.52 16 9 N -0.72 -4.56 5.18 -53.48 -0.28 -4.83 16 10 C 0.11 0.99 4.62 -67.67 -0.31 0.68 16 11 C 0.10 0.93 8.38 -8.51 -0.07 0.86 16 12 N -0.65 -8.75 3.69 -185.07 -0.68 -9.43 16 13 C 0.57 10.55 8.10 -10.99 -0.09 10.46 16 14 O -0.51 -11.46 16.64 5.56 0.09 -11.37 16 15 C -0.12 -2.33 5.98 36.00 0.22 -2.11 16 16 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 17 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 18 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 21 Si 0.86 21.97 27.74 -169.99 -4.72 17.25 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 25 C 0.09 0.84 8.25 -8.37 -0.07 0.77 16 26 H 0.08 0.07 7.56 -51.93 -0.39 -0.33 16 27 H 0.07 0.02 7.56 -51.93 -0.39 -0.37 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.04 7.56 -51.93 -0.39 -0.36 16 31 H 0.08 0.08 7.56 -51.93 -0.39 -0.31 16 32 H 0.40 0.05 7.67 -40.82 -0.31 -0.27 16 33 H 0.40 1.27 8.93 -40.82 -0.36 0.90 16 34 H 0.40 1.18 7.59 -40.82 -0.31 0.87 16 35 H 0.13 1.48 7.45 -51.93 -0.39 1.09 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 39 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -41.82 368.85 -7.18 -48.99 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.90 Total: -3.56 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.25 Total: 6.71 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.09 Total: -43.02 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.45 Total: -26.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -41.82 -7.18 -48.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498243665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.644 kcal (2) G-P(sol) polarization free energy of solvation -41.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds