Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00357 * 2 1 4 4 H 1.48495 * 109.47273 * 240.00407 * 3 2 1 5 5 H 1.48509 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47174 * 120.00384 * 3 2 1 7 7 C 1.38796 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99870 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00444 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47177 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99870 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99975 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00277 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47353 * 179.97438 * 14 13 11 16 16 H 1.08999 * 110.43569 * 303.91467 * 15 14 13 17 17 C 1.54266 * 110.48404 * 66.45870 * 15 14 13 18 18 C 1.53872 * 106.59976 * 142.41998 * 17 15 14 19 19 C 1.54263 * 106.59871 * 359.97438 * 18 17 15 20 20 H 1.08995 * 110.48656 * 95.19961 * 19 18 17 21 21 N 1.46498 * 110.48984 * 217.71091 * 19 18 17 22 22 C 1.34774 * 120.00210 * 273.54816 * 21 19 18 23 23 O 1.21348 * 119.99610 * 0.02562 * 22 21 19 24 24 C 1.49448 * 119.99767 * 179.97438 * 22 21 19 25 25 N 1.34784 * 119.99762 * 179.97438 * 24 22 21 26 26 O 1.21341 * 120.00524 * 359.72844 * 24 22 21 27 27 C 1.54890 * 104.19871 * 336.39182 * 19 18 17 28 28 H 0.96998 * 120.00191 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47166 * 59.99945 * 10 9 7 30 30 H 1.08997 * 109.47044 * 300.00188 * 10 9 7 31 31 H 0.97004 * 120.00186 * 0.02562 * 13 11 10 32 32 H 1.09009 * 109.46693 * 60.00226 * 14 13 11 33 33 H 1.08999 * 109.47158 * 300.00769 * 14 13 11 34 34 H 1.09005 * 110.03465 * 23.13122 * 17 15 14 35 35 H 1.09000 * 110.07088 * 261.72845 * 17 15 14 36 36 H 1.09004 * 110.03117 * 240.72033 * 18 17 15 37 37 H 1.08997 * 110.03259 * 119.28568 * 18 17 15 38 38 H 0.97004 * 119.99753 * 93.54332 * 21 19 18 39 39 H 0.96999 * 120.00044 * 179.72855 * 25 24 22 40 40 H 0.97005 * 119.99846 * 359.72685 * 25 24 22 41 41 H 1.08997 * 110.76320 * 156.25459 * 27 19 18 42 42 H 1.09000 * 110.75904 * 279.62974 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1042 1.6962 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0021 11 6 1.9871 -5.3028 -0.0017 12 8 0.7909 -5.5023 -0.0009 13 7 2.8439 -6.3432 -0.0022 14 6 2.3301 -7.7151 -0.0012 15 6 3.5022 -8.6987 -0.0027 16 1 4.1588 -8.5069 -0.8513 17 6 4.2886 -8.6033 1.3210 18 6 4.7163 -10.0365 1.6825 19 6 4.1743 -10.9529 0.5661 20 1 4.9400 -11.1272 -0.1897 21 7 3.7101 -12.2243 1.1266 22 6 4.5788 -13.2391 1.3054 23 8 5.7455 -13.0995 1.0026 24 6 4.1052 -14.5360 1.8777 25 7 4.9739 -15.5510 2.0561 26 8 2.9397 -14.6736 2.1860 27 6 2.9871 -10.1594 -0.0339 28 1 -0.4850 0.8400 0.0004 29 1 3.1250 -3.7318 0.8874 30 1 3.1236 -3.7310 -0.8925 31 1 3.8007 -6.1836 -0.0025 32 1 1.7206 -7.8755 -0.8907 33 1 1.7223 -7.8749 0.8893 34 1 3.6514 -8.1947 2.1054 35 1 5.1682 -7.9732 1.1890 36 1 4.2865 -10.3236 2.6422 37 1 5.8035 -10.1022 1.7251 38 1 2.7775 -12.3358 1.3691 39 1 4.6674 -16.3914 2.4312 40 1 5.9055 -15.4411 1.8093 41 1 2.7881 -10.4768 -1.0575 42 1 2.0969 -10.2687 0.5855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514986738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -126.455661 kcal Electronic energy + Delta-G solvation = -24361.359083 eV Core-core repulsion = 20466.800207 eV Total energy + Delta-G solvation = -3894.558876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14956 -39.68958 -38.99228 -38.14564 -35.37476 -34.25409 -33.45941 -32.42768 -30.48463 -29.15057 -28.41214 -25.63984 -25.36862 -24.16965 -21.36559 -21.22269 -20.24104 -20.03091 -19.13304 -17.90540 -17.69420 -16.94228 -16.45557 -16.37750 -16.14968 -15.97022 -15.53975 -15.07111 -14.80259 -14.57682 -14.30224 -13.97686 -13.85115 -13.70179 -13.16653 -12.87015 -12.69276 -12.49356 -12.28846 -12.09332 -11.86019 -11.56527 -11.26013 -11.12077 -11.04402 -11.03517 -10.80956 -10.76428 -10.47006 -10.22344 -9.82406 -9.71318 -9.40262 -9.06280 -8.88313 -8.23863 -6.49932 -6.21365 -3.92093 0.88640 1.95591 2.68638 3.03014 3.10397 3.23602 3.27090 3.29413 3.34885 3.71235 3.97065 4.08924 4.13888 4.20792 4.43035 4.79969 4.90450 4.96575 5.01378 5.10544 5.13604 5.13988 5.23848 5.36287 5.51631 5.61322 5.66491 5.68746 5.70826 5.84198 5.88640 5.90250 5.97240 6.02962 6.14019 6.34514 6.61456 6.76962 7.25780 7.47565 7.59312 7.70742 8.35096 8.61686 9.23784 10.86014 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.043451 B = 0.001622 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.252198 B =17263.105798 C =17623.169668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.129 3.871 15 C -0.101 4.101 16 H 0.087 0.913 17 C -0.121 4.121 18 C -0.135 4.135 19 C 0.138 3.862 20 H 0.100 0.900 21 N -0.691 5.691 22 C 0.506 3.494 23 O -0.519 6.519 24 C 0.513 3.487 25 N -0.823 5.823 26 O -0.521 6.521 27 C -0.122 4.122 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.414 0.586 39 H 0.412 0.588 40 H 0.414 0.586 41 H 0.081 0.919 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 -29.337 2.391 32.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.005 3.995 15 C -0.120 4.120 16 H 0.105 0.895 17 C -0.159 4.159 18 C -0.173 4.173 19 C 0.034 3.966 20 H 0.118 0.882 21 N -0.344 5.344 22 C 0.286 3.714 23 O -0.395 6.395 24 C 0.291 3.709 25 N -0.389 5.389 26 O -0.396 6.396 27 C -0.161 4.161 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.245 0.755 41 H 0.099 0.901 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.116 -29.367 2.313 31.485 hybrid contribution 2.390 0.933 0.203 2.574 sum 13.507 -28.433 2.515 31.579 Atomic orbital electron populations 1.70005 1.05953 1.27568 1.46758 1.24985 0.95021 0.99006 0.94516 0.86226 0.79238 0.81253 0.78788 1.19944 1.20804 1.19954 1.22832 0.94881 0.91696 1.59096 0.90980 1.85394 1.04955 0.96305 1.96723 1.23531 1.06553 0.95453 1.04895 1.20305 0.86524 0.86304 0.75150 1.90704 1.15399 1.85631 1.47517 1.45976 1.09920 1.05449 1.77951 1.21287 0.95192 0.80524 1.02487 1.22168 0.97021 0.93877 0.98945 0.89462 1.22225 1.00298 0.96233 0.97123 1.22554 1.01627 0.94588 0.98580 1.22051 0.97341 0.81367 0.95848 0.88187 1.45882 1.13234 1.12663 1.62586 1.20066 0.86305 0.85133 0.79856 1.90783 1.16832 1.82512 1.49358 1.20163 0.85991 0.85620 0.79081 1.43542 1.13892 1.15939 1.65505 1.90840 1.17102 1.82438 1.49200 1.22748 0.97451 0.93793 1.02066 0.92126 0.89257 0.89243 0.76840 0.91488 0.91445 0.90756 0.91118 0.91126 0.90921 0.74900 0.75595 0.75502 0.90062 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.66 7.85 -10.99 -0.09 9.57 16 12 O -0.52 -11.63 15.86 5.56 0.09 -11.54 16 13 N -0.74 -9.17 5.39 -60.29 -0.33 -9.49 16 14 C 0.13 1.33 5.00 -4.04 -0.02 1.31 16 15 C -0.10 -0.68 2.93 -88.94 -0.26 -0.94 16 16 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 17 C -0.12 -0.81 6.05 -25.61 -0.15 -0.96 16 18 C -0.13 -0.89 6.53 -25.62 -0.17 -1.06 16 19 C 0.14 0.87 3.16 -66.27 -0.21 0.66 16 20 H 0.10 0.70 7.66 -51.93 -0.40 0.30 16 21 N -0.69 -4.49 5.11 -52.63 -0.27 -4.76 16 22 C 0.51 3.92 7.88 -11.59 -0.09 3.83 16 23 O -0.52 -5.01 16.19 5.50 0.09 -4.92 16 24 C 0.51 3.66 8.16 -11.58 -0.09 3.57 16 25 N -0.82 -3.09 8.87 30.90 0.27 -2.81 16 26 O -0.52 -5.12 17.31 5.50 0.10 -5.02 16 27 C -0.12 -0.70 5.92 -24.72 -0.15 -0.84 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.80 8.32 -40.82 -0.34 3.46 16 32 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.07 0.58 7.78 -51.93 -0.40 0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.41 2.34 8.00 -40.82 -0.33 2.01 16 39 H 0.41 0.80 8.93 -40.82 -0.36 0.43 16 40 H 0.41 1.03 8.30 -40.82 -0.34 0.69 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.46 7.94 -51.93 -0.41 0.04 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -37.27 374.15 -7.64 -44.92 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.92 Total: 1.57 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.81 Total: -0.64 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.41 Total: -42.46 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.27 Total: -21.49 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.27 -7.64 -44.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514986738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.540 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds