Wall clock time and date at job start Tue Mar 31 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32566 * 121.64255 * 2 1 4 4 S 1.77234 * 105.31875 * 180.19847 * 3 2 1 5 5 C 1.72211 * 94.84575 * 359.76394 * 4 3 2 6 6 O 1.21826 * 127.05667 * 180.02562 * 5 4 3 7 7 N 1.34248 * 105.88470 * 0.02562 * 5 4 3 8 8 C 1.46500 * 121.37574 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47525 * 90.02502 * 8 7 5 10 10 C 1.50698 * 109.47004 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08998 * 109.46700 * 305.00136 * 14 13 12 16 16 O 1.42903 * 109.46927 * 64.99809 * 14 13 12 17 17 C 1.52998 * 109.47023 * 185.00121 * 14 13 12 18 18 N 1.46506 * 109.46772 * 179.97438 * 17 14 13 19 19 C 1.36939 * 119.99745 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00030 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99907 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00016 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47116 * 90.00264 * 23 21 19 25 25 H 1.48497 * 109.47079 * 210.00547 * 23 21 19 26 26 H 1.48501 * 109.46884 * 330.00227 * 23 21 19 27 27 H 1.08992 * 109.47062 * 270.23615 * 1 2 3 28 28 H 1.08997 * 109.47099 * 30.24002 * 1 2 3 29 29 H 1.09008 * 109.46493 * 150.24057 * 1 2 3 30 30 H 1.08000 * 127.34062 * 359.94185 * 3 2 1 31 31 H 1.09000 * 109.47205 * 330.01709 * 8 7 5 32 32 H 1.09007 * 109.46719 * 210.02723 * 8 7 5 33 33 H 1.09003 * 109.46690 * 59.99747 * 9 8 7 34 34 H 1.08993 * 109.46773 * 300.00083 * 9 8 7 35 35 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 36 36 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 37 37 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 38 38 H 0.96706 * 113.99936 * 60.00707 * 16 14 13 39 39 H 1.09005 * 109.47209 * 299.99293 * 17 14 13 40 40 H 1.08991 * 109.47437 * 59.99960 * 17 14 13 41 41 H 0.96997 * 120.00348 * 0.02562 * 18 17 14 42 42 H 0.96996 * 119.99974 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9034 0.6304 -0.0059 5 6 3.5607 -1.0572 -0.0009 6 8 4.3674 -1.9701 -0.0018 7 7 2.2222 -1.1604 0.0042 8 6 1.5578 -2.4661 0.0090 9 6 1.3313 -2.9178 1.4531 10 6 0.6473 -4.2606 1.4579 11 8 0.3689 -4.8032 0.4096 12 7 0.3459 -4.8591 2.6273 13 6 -0.3244 -6.1618 2.6320 14 6 -0.5554 -6.6113 4.0762 15 1 0.3929 -6.6084 4.6136 16 8 -1.4671 -5.7146 4.7140 17 6 -1.1413 -8.0246 4.0828 18 7 -1.3619 -8.4552 5.4657 19 6 -1.8840 -9.6950 5.7217 20 1 -2.1328 -10.3555 4.9042 21 6 -2.0926 -10.1032 7.0320 22 7 -1.7890 -9.2984 8.0282 23 14 -2.8042 -11.7947 7.3812 24 1 -1.6999 -12.7787 7.5127 25 1 -3.5830 -11.7528 8.6449 26 1 -3.6954 -12.1971 6.2637 27 1 -0.3633 0.0042 1.0276 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3632 -0.8922 -0.5101 30 1 1.8152 2.1367 -0.0009 31 1 2.1845 -3.1945 -0.5056 32 1 0.5981 -2.3872 -0.5019 33 1 0.7046 -2.1893 1.9676 34 1 2.2909 -2.9966 1.9639 35 1 0.5689 -4.4254 3.4658 36 1 -1.2829 -6.0791 2.1195 37 1 0.2999 -6.8935 2.1192 38 1 -2.3340 -5.6662 4.2881 39 1 -2.0896 -8.0274 3.5454 40 1 -0.4459 -8.7085 3.5963 41 1 -1.1389 -7.8619 6.1999 42 1 -1.9351 -9.5835 8.9438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667837620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:44 Heat of formation + Delta-G solvation = -81.181826 kcal Electronic energy + Delta-G solvation = -24884.283576 eV Core-core repulsion = 20991.687921 eV Total energy + Delta-G solvation = -3892.595655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 8.55 seconds Orbital eigenvalues (eV) -41.50679 -39.89444 -37.98435 -37.71925 -34.53232 -34.04880 -33.85323 -31.79649 -31.31850 -29.50855 -28.39145 -25.93086 -24.84915 -23.53877 -22.52782 -21.51343 -20.81180 -20.38383 -18.49603 -17.99654 -17.22593 -17.13862 -16.56594 -16.39654 -16.23776 -15.59046 -15.38522 -15.10636 -14.70308 -14.51276 -14.20438 -14.14730 -13.85417 -13.78726 -13.57562 -13.22239 -13.02432 -12.81237 -12.62964 -12.37577 -11.93746 -11.87129 -11.68751 -11.55299 -10.99463 -10.85179 -10.70089 -10.47375 -10.29222 -10.20016 -10.00693 -9.84780 -9.55408 -9.25254 -8.94201 -8.38193 -6.98125 -5.79788 -3.09751 0.54866 0.94005 1.37155 1.72245 2.25991 2.36947 2.99579 3.41272 3.46290 3.48083 3.99277 4.24270 4.27005 4.47619 4.51435 4.57761 4.66785 4.79232 4.83023 4.88328 4.96925 5.03216 5.11196 5.16192 5.20934 5.44947 5.51411 5.54531 5.66910 5.71501 5.87671 6.13275 6.25665 6.29100 6.45383 6.61188 6.90611 7.27135 7.64937 7.85905 7.97234 8.38317 9.50066 10.06146 10.41973 11.42472 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.001745 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.122199 B =16046.432751 C =16129.587044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.103 3.897 3 C -0.240 4.240 4 S -0.001 6.001 5 C 0.479 3.521 6 O -0.469 6.469 7 N -0.533 5.533 8 C 0.116 3.884 9 C -0.158 4.158 10 C 0.518 3.482 11 O -0.544 6.544 12 N -0.718 5.718 13 C 0.089 3.911 14 C 0.089 3.911 15 H 0.105 0.895 16 O -0.552 6.552 17 C 0.127 3.873 18 N -0.726 5.726 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.192 0.808 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.406 0.594 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.373 0.627 39 H 0.023 0.977 40 H 0.029 0.971 41 H 0.389 0.611 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 25.185 -17.586 31.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.008 4.008 3 C -0.378 4.378 4 S 0.242 5.758 5 C 0.161 3.839 6 O -0.348 6.348 7 N -0.254 5.254 8 C -0.009 4.009 9 C -0.199 4.199 10 C 0.303 3.697 11 O -0.422 6.422 12 N -0.369 5.369 13 C -0.035 4.035 14 C 0.029 3.971 15 H 0.122 0.878 16 O -0.357 6.357 17 C -0.002 4.002 18 N -0.371 5.371 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.209 0.791 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.221 0.779 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.224 0.776 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.452 24.767 -17.958 31.487 hybrid contribution -1.816 -1.397 0.592 2.366 sum 5.637 23.370 -17.366 29.657 Atomic orbital electron populations 1.20846 0.86483 1.04759 1.04268 1.19491 0.95942 0.84867 1.00458 1.24917 0.93160 1.01357 1.18355 1.85243 1.08514 1.01171 1.80865 1.21652 0.83775 0.95776 0.82733 1.90999 1.48563 1.42384 1.52830 1.46155 1.06391 1.07833 1.65022 1.21635 1.00104 0.82379 0.96787 1.21965 1.03208 0.95916 0.98791 1.20230 0.78879 0.86592 0.83971 1.90734 1.54059 1.66011 1.31381 1.45928 1.60646 1.21710 1.08638 1.22150 0.98190 0.84407 0.98770 1.22394 0.94258 0.90241 0.90222 0.87770 1.86580 1.26695 1.64756 1.57656 1.21190 0.97476 0.91670 0.89876 1.42227 1.77001 1.17229 1.00602 1.19216 1.34481 0.92064 0.91836 0.91197 1.24774 1.02070 0.98456 0.95578 1.69676 1.53791 1.35974 0.98325 0.86168 0.78595 0.83881 0.77383 1.21662 1.21706 1.20744 0.89395 0.89006 0.90177 0.79083 0.87707 0.87733 0.88108 0.88070 0.75878 0.90908 0.90290 0.77944 0.95936 0.95358 0.77645 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.29 9.70 36.01 0.35 0.06 16 2 C 0.10 0.57 6.59 -82.51 -0.54 0.03 16 3 C -0.24 -1.22 11.25 28.83 0.32 -0.90 16 4 S 0.00 -0.01 22.97 -107.50 -2.47 -2.48 16 5 C 0.48 5.07 8.27 53.82 0.45 5.51 16 6 O -0.47 -6.60 17.55 5.08 0.09 -6.51 16 7 N -0.53 -4.27 2.60 -117.28 -0.31 -4.58 16 8 C 0.12 0.94 4.56 -4.04 -0.02 0.92 16 9 C -0.16 -1.20 6.02 -27.88 -0.17 -1.37 16 10 C 0.52 5.54 7.83 -10.99 -0.09 5.46 16 11 O -0.54 -7.71 15.98 5.55 0.09 -7.62 16 12 N -0.72 -7.41 5.50 -60.29 -0.33 -7.75 16 13 C 0.09 1.08 5.31 -4.04 -0.02 1.06 16 14 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 15 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 16 O -0.55 -8.25 13.03 -35.23 -0.46 -8.71 16 17 C 0.13 2.38 5.92 -4.04 -0.02 2.36 16 18 N -0.73 -18.09 5.49 -59.91 -0.33 -18.42 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.10 8.10 -51.93 -0.42 -0.32 16 29 H 0.08 0.24 6.18 -51.92 -0.32 -0.08 16 30 H 0.19 0.42 8.06 -52.49 -0.42 -0.01 16 31 H 0.10 1.07 7.76 -51.93 -0.40 0.66 16 32 H 0.10 0.70 6.07 -51.93 -0.32 0.39 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.41 3.60 8.47 -40.82 -0.35 3.25 16 36 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.37 4.60 9.05 45.56 0.41 5.02 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.39 10.39 7.54 -40.82 -0.31 10.09 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -35.73 373.60 -7.51 -43.24 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.05 Total: 10.39 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.07 Total: 6.91 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.24 Total: -58.17 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.28 Total: -22.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.47 Total: -2.48 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.73 -7.51 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667837620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.941 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.55 seconds