Wall clock time and date at job start Tue Mar 31 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32566 * 121.64255 * 2 1 4 4 S 1.77234 * 105.31875 * 180.19847 * 3 2 1 5 5 C 1.72211 * 94.84575 * 359.76394 * 4 3 2 6 6 O 1.21826 * 127.05667 * 180.02562 * 5 4 3 7 7 N 1.34248 * 105.88470 * 0.02562 * 5 4 3 8 8 C 1.46500 * 121.37574 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47525 * 90.02502 * 8 7 5 10 10 C 1.50698 * 109.47004 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08998 * 109.46700 * 305.00136 * 14 13 12 16 16 O 1.42903 * 109.46927 * 64.99809 * 14 13 12 17 17 C 1.52998 * 109.47023 * 185.00121 * 14 13 12 18 18 N 1.46506 * 109.46772 * 179.97438 * 17 14 13 19 19 C 1.36939 * 119.99745 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00030 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99907 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00016 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47116 * 90.00264 * 23 21 19 25 25 H 1.48497 * 109.47079 * 210.00547 * 23 21 19 26 26 H 1.48501 * 109.46884 * 330.00227 * 23 21 19 27 27 H 1.08992 * 109.47062 * 270.23615 * 1 2 3 28 28 H 1.08997 * 109.47099 * 30.24002 * 1 2 3 29 29 H 1.09008 * 109.46493 * 150.24057 * 1 2 3 30 30 H 1.08000 * 127.34062 * 359.94185 * 3 2 1 31 31 H 1.09000 * 109.47205 * 330.01709 * 8 7 5 32 32 H 1.09007 * 109.46719 * 210.02723 * 8 7 5 33 33 H 1.09003 * 109.46690 * 59.99747 * 9 8 7 34 34 H 1.08993 * 109.46773 * 300.00083 * 9 8 7 35 35 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 36 36 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 37 37 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 38 38 H 0.96706 * 113.99936 * 60.00707 * 16 14 13 39 39 H 1.09005 * 109.47209 * 299.99293 * 17 14 13 40 40 H 1.08991 * 109.47437 * 59.99960 * 17 14 13 41 41 H 0.96997 * 120.00348 * 0.02562 * 18 17 14 42 42 H 0.96996 * 119.99974 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9034 0.6304 -0.0059 5 6 3.5607 -1.0572 -0.0009 6 8 4.3674 -1.9701 -0.0018 7 7 2.2222 -1.1604 0.0042 8 6 1.5578 -2.4661 0.0090 9 6 1.3313 -2.9178 1.4531 10 6 0.6473 -4.2606 1.4579 11 8 0.3689 -4.8032 0.4096 12 7 0.3459 -4.8591 2.6273 13 6 -0.3244 -6.1618 2.6320 14 6 -0.5554 -6.6113 4.0762 15 1 0.3929 -6.6084 4.6136 16 8 -1.4671 -5.7146 4.7140 17 6 -1.1413 -8.0246 4.0828 18 7 -1.3619 -8.4552 5.4657 19 6 -1.8840 -9.6950 5.7217 20 1 -2.1328 -10.3555 4.9042 21 6 -2.0926 -10.1032 7.0320 22 7 -1.7890 -9.2984 8.0282 23 14 -2.8042 -11.7947 7.3812 24 1 -1.6999 -12.7787 7.5127 25 1 -3.5830 -11.7528 8.6449 26 1 -3.6954 -12.1971 6.2637 27 1 -0.3633 0.0042 1.0276 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3632 -0.8922 -0.5101 30 1 1.8152 2.1367 -0.0009 31 1 2.1845 -3.1945 -0.5056 32 1 0.5981 -2.3872 -0.5019 33 1 0.7046 -2.1893 1.9676 34 1 2.2909 -2.9966 1.9639 35 1 0.5689 -4.4254 3.4658 36 1 -1.2829 -6.0791 2.1195 37 1 0.2999 -6.8935 2.1192 38 1 -2.3340 -5.6662 4.2881 39 1 -2.0896 -8.0274 3.5454 40 1 -0.4459 -8.7085 3.5963 41 1 -1.1389 -7.8619 6.1999 42 1 -1.9351 -9.5835 8.9438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667837620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:34 Heat of formation + Delta-G solvation = -110.572656 kcal Electronic energy + Delta-G solvation = -24885.558058 eV Core-core repulsion = 20991.687921 eV Total energy + Delta-G solvation = -3893.870137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 6.65 seconds Orbital eigenvalues (eV) -42.14426 -40.81414 -38.98786 -38.69544 -36.09387 -35.34046 -34.47620 -33.20663 -32.29260 -30.72520 -29.09465 -27.18255 -25.85627 -24.56583 -23.82307 -22.77991 -21.56578 -21.19036 -19.27916 -19.05590 -18.72200 -18.06746 -17.41864 -17.35459 -17.21337 -16.52176 -16.46781 -16.24016 -15.99307 -15.46676 -15.26428 -14.98365 -14.67956 -14.64435 -14.54756 -14.33223 -14.11163 -13.80305 -13.72158 -13.26284 -13.09846 -12.96010 -12.76429 -12.42307 -12.27678 -12.17299 -12.05706 -11.98187 -11.82025 -11.31155 -11.18841 -11.00088 -10.88682 -10.59462 -10.18493 -9.02335 -8.97005 -7.96138 -5.25633 -0.12884 0.37344 0.86667 1.10690 1.47108 1.48785 1.51355 1.57212 1.63620 2.15354 2.55326 3.34905 3.43371 3.51291 3.59212 3.59962 3.67949 3.88596 4.02503 4.17617 4.20376 4.29625 4.40269 4.43989 4.57489 4.60812 4.66344 4.72047 4.79163 4.80477 4.92318 5.02612 5.19436 5.30854 5.32446 5.47220 5.73371 6.22132 6.25123 6.43211 6.79812 7.12036 7.32381 8.07798 8.30812 9.26974 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.001745 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.122199 B =16046.432751 C =16129.587044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.092 3.908 3 C -0.222 4.222 4 S -0.006 6.006 5 C 0.459 3.541 6 O -0.523 6.523 7 N -0.529 5.529 8 C 0.118 3.882 9 C -0.145 4.145 10 C 0.520 3.480 11 O -0.580 6.580 12 N -0.711 5.711 13 C 0.102 3.898 14 C 0.108 3.892 15 H 0.099 0.901 16 O -0.561 6.561 17 C 0.121 3.879 18 N -0.740 5.740 19 C -0.249 4.249 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.269 1.269 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.416 0.584 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.386 0.614 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.377 0.623 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 26.897 -18.302 32.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.018 4.018 3 C -0.359 4.359 4 S 0.237 5.763 5 C 0.143 3.857 6 O -0.406 6.406 7 N -0.249 5.249 8 C -0.008 4.008 9 C -0.186 4.186 10 C 0.307 3.693 11 O -0.460 6.460 12 N -0.363 5.363 13 C -0.023 4.023 14 C 0.048 3.952 15 H 0.117 0.883 16 O -0.368 6.368 17 C -0.006 4.006 18 N -0.383 5.383 19 C -0.381 4.381 20 H 0.094 0.906 21 C -0.269 4.269 22 N -0.618 5.618 23 Si 0.804 3.196 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.193 1.193 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.244 0.756 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.235 0.765 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.209 0.791 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.958 26.527 -18.712 33.005 hybrid contribution -1.379 -1.814 0.730 2.392 sum 4.579 24.713 -17.982 30.904 Atomic orbital electron populations 1.20979 0.83913 1.05772 1.05402 1.20019 0.97356 0.83883 1.00502 1.25438 0.90607 1.02776 1.17100 1.85259 1.11415 0.99328 1.80264 1.22034 0.84356 0.96320 0.82986 1.90956 1.50055 1.44225 1.55402 1.46177 1.05788 1.08675 1.64256 1.21567 1.00103 0.82056 0.97025 1.21886 1.03178 0.94732 0.98758 1.20660 0.78180 0.87240 0.83226 1.90724 1.55606 1.67083 1.32607 1.45830 1.60228 1.21016 1.09193 1.21862 0.98580 0.85180 0.96667 1.22073 0.93585 0.87894 0.91629 0.88339 1.86561 1.27575 1.64374 1.58294 1.21412 0.98137 0.94255 0.86839 1.42408 1.76849 1.16354 1.02674 1.19642 1.33200 0.93151 0.92062 0.90583 1.25609 1.03427 1.02226 0.95603 1.69831 1.55704 1.37860 0.98383 0.85120 0.77838 0.79510 0.77145 1.21478 1.22130 1.19346 0.88084 0.86749 0.90411 0.75553 0.90549 0.86083 0.84977 0.88389 0.74775 0.90351 0.90905 0.76548 0.94967 0.95099 0.79055 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.18 9.70 71.24 0.69 0.51 16 2 C 0.09 0.77 6.59 40.71 0.27 1.04 16 3 C -0.22 -1.60 11.25 66.67 0.75 -0.85 16 4 S -0.01 -0.09 22.97 -56.49 -1.30 -1.39 16 5 C 0.46 9.93 8.27 129.87 1.07 11.00 16 6 O -0.52 -15.73 17.55 -4.75 -0.08 -15.81 16 7 N -0.53 -7.99 2.60 -643.41 -1.68 -9.67 16 8 C 0.12 1.83 4.56 86.38 0.39 2.23 16 9 C -0.14 -2.00 6.02 29.85 0.18 -1.82 16 10 C 0.52 10.50 7.83 87.66 0.69 11.19 16 11 O -0.58 -16.09 15.98 -3.04 -0.05 -16.14 16 12 N -0.71 -13.58 5.50 -463.05 -2.55 -16.12 16 13 C 0.10 2.33 5.31 86.38 0.46 2.79 16 14 C 0.11 3.03 3.09 30.59 0.09 3.12 16 15 H 0.10 2.90 8.14 -2.39 -0.02 2.89 16 16 O -0.56 -15.97 13.03 -148.98 -1.94 -17.91 16 17 C 0.12 4.45 5.92 86.38 0.51 4.96 16 18 N -0.74 -36.78 5.49 -343.44 -1.89 -38.67 16 19 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 22 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 23 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.11 -0.27 8.10 -2.39 -0.02 -0.29 16 29 H 0.08 0.22 6.18 -2.38 -0.01 0.20 16 30 H 0.23 -0.07 8.06 -2.91 -0.02 -0.09 16 31 H 0.08 1.65 7.76 -2.39 -0.02 1.63 16 32 H 0.12 1.46 6.07 -2.38 -0.01 1.44 16 33 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.42 6.56 8.47 -92.71 -0.79 5.78 16 36 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.39 8.82 9.05 -74.05 -0.67 8.15 16 39 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.38 20.32 7.54 -92.71 -0.70 19.62 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -79.04 373.60 -1.83 -80.87 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -1.07 Total: 28.54 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.41 Total: 17.35 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.83 Total: -123.45 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.07 Total: -49.86 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.30 Total: -1.39 kcal Total: -79.04 -1.83 -80.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667837620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.705 kcal (2) G-P(sol) polarization free energy of solvation -79.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.65 seconds