Wall clock time and date at job start Tue Mar 31 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32561 * 121.64535 * 2 1 4 4 S 1.77231 * 105.31794 * 179.97438 * 3 2 1 5 5 C 1.72209 * 94.84622 * 0.02562 * 4 3 2 6 6 O 1.21833 * 127.05351 * 179.97438 * 5 4 3 7 7 N 1.34245 * 105.88553 * 0.02562 * 5 4 3 8 8 C 1.46491 * 121.37722 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47602 * 89.97271 * 8 7 5 10 10 C 1.50703 * 109.47428 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99941 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00034 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00206 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47138 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47034 * 59.99549 * 14 13 12 16 16 O 1.42901 * 109.47101 * 299.99378 * 14 13 12 17 17 C 1.53004 * 109.46639 * 179.97438 * 14 13 12 18 18 N 1.46500 * 109.46860 * 184.99775 * 17 14 13 19 19 C 1.36934 * 120.00022 * 179.97438 * 18 17 14 20 20 H 1.07994 * 120.00049 * 0.02562 * 19 18 17 21 21 C 1.38819 * 120.00061 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00116 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99769 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46909 * 90.00280 * 23 21 19 25 25 H 1.48498 * 109.46629 * 209.99814 * 23 21 19 26 26 H 1.48492 * 109.47187 * 329.99996 * 23 21 19 27 27 H 1.09001 * 109.46940 * 270.02483 * 1 2 3 28 28 H 1.09003 * 109.46972 * 30.01884 * 1 2 3 29 29 H 1.08995 * 109.46841 * 150.02109 * 1 2 3 30 30 H 1.08004 * 127.34458 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.47176 * 209.97056 * 8 7 5 32 32 H 1.09002 * 109.47337 * 329.96812 * 8 7 5 33 33 H 1.09008 * 109.47313 * 299.99733 * 9 8 7 34 34 H 1.09002 * 109.47149 * 59.99426 * 9 8 7 35 35 H 0.97007 * 120.00039 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.46565 * 299.99633 * 13 12 10 37 37 H 1.08997 * 109.47000 * 59.99396 * 13 12 10 38 38 H 0.96703 * 113.99772 * 300.00586 * 16 14 13 39 39 H 1.09003 * 109.46979 * 304.99594 * 17 14 13 40 40 H 1.08993 * 109.47301 * 65.00160 * 17 14 13 41 41 H 0.97001 * 119.99963 * 359.97438 * 18 17 14 42 42 H 0.96994 * 120.00034 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 0.0008 5 6 3.5607 -1.0574 0.0003 6 8 4.3674 -1.9703 0.0001 7 7 2.2222 -1.1605 -0.0010 8 6 1.5577 -2.4660 -0.0012 9 6 1.3256 -2.9205 1.4411 10 6 0.6414 -4.2633 1.4409 11 8 0.3671 -4.8038 0.3904 12 7 0.3355 -4.8639 2.6079 13 6 -0.3290 -6.1695 2.6077 14 6 -0.5613 -6.6238 4.0502 15 1 -1.1899 -5.8962 4.5635 16 8 0.6942 -6.7286 4.7246 17 6 -1.2559 -7.9871 4.0498 18 7 -1.5855 -8.3675 5.4256 19 6 -2.2167 -9.5569 5.6746 20 1 -2.4711 -10.2147 4.8568 21 6 -2.5295 -9.9172 6.9782 22 7 -3.1357 -11.0606 7.2176 23 14 -2.0899 -8.7790 8.3927 24 1 -3.2162 -7.8444 8.6443 25 1 -1.8324 -9.5838 9.6138 26 1 -0.8720 -8.0041 8.0445 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 1.8154 2.1367 0.0004 31 1 0.6000 -2.3862 -0.5156 32 1 2.1863 -3.1936 -0.5147 33 1 2.2833 -3.0003 1.9556 34 1 0.6969 -2.1929 1.9546 35 1 0.5553 -4.4317 3.4481 36 1 -1.2869 -6.0895 2.0937 37 1 0.2994 -6.8969 2.0939 38 1 1.3058 -7.3600 4.3214 39 1 -2.1706 -7.9286 3.4599 40 1 -0.5908 -8.7337 3.6159 41 1 -1.3566 -7.7769 6.1602 42 1 -3.3539 -11.3125 8.1285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667837621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:57 Heat of formation + Delta-G solvation = -77.319539 kcal Electronic energy + Delta-G solvation = -24964.339172 eV Core-core repulsion = 21071.910998 eV Total energy + Delta-G solvation = -3892.428174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -41.54543 -39.96524 -38.02971 -37.86170 -34.64368 -34.20950 -33.89759 -31.84556 -31.50546 -29.78844 -28.54786 -26.11780 -24.93448 -23.54310 -22.24275 -21.60928 -20.85836 -20.46958 -18.53100 -18.07417 -17.75470 -17.20704 -16.62046 -16.43273 -16.30828 -15.72958 -15.34304 -15.24426 -14.76523 -14.54579 -14.23469 -14.17555 -13.96754 -13.84073 -13.57073 -13.32410 -13.24834 -12.86244 -12.65532 -12.44687 -12.07543 -11.91784 -11.73504 -11.58846 -11.35814 -10.91626 -10.88453 -10.51458 -10.34764 -10.20965 -10.05357 -9.80015 -9.60372 -9.32526 -8.97325 -8.41638 -7.30715 -5.81586 -3.18247 0.51484 0.90584 1.33756 1.68629 2.22062 2.30974 2.92229 3.35773 3.41397 3.43586 3.95367 4.19252 4.22700 4.40843 4.49107 4.54228 4.56209 4.64183 4.76806 4.84375 4.92091 4.99229 5.04035 5.07550 5.16163 5.38371 5.41139 5.46809 5.60056 5.63962 5.69472 5.79237 6.14987 6.25470 6.35511 6.48268 6.87134 7.20007 7.69663 7.90610 7.93548 8.36705 9.15782 9.87686 10.06968 11.36344 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.001870 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.316826 B =14970.978738 C =15068.046228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.103 3.897 3 C -0.240 4.240 4 S 0.000 6.000 5 C 0.479 3.521 6 O -0.469 6.469 7 N -0.533 5.533 8 C 0.116 3.884 9 C -0.158 4.158 10 C 0.518 3.482 11 O -0.542 6.542 12 N -0.719 5.719 13 C 0.089 3.911 14 C 0.085 3.915 15 H 0.105 0.895 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.749 5.749 19 C -0.249 4.249 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.273 1.273 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.192 0.808 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.377 0.623 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.365 0.635 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 28.893 -15.979 34.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.008 4.008 3 C -0.378 4.378 4 S 0.243 5.757 5 C 0.160 3.840 6 O -0.348 6.348 7 N -0.254 5.254 8 C -0.009 4.009 9 C -0.199 4.199 10 C 0.303 3.697 11 O -0.420 6.420 12 N -0.370 5.370 13 C -0.035 4.035 14 C 0.025 3.975 15 H 0.122 0.878 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.379 4.379 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.199 1.199 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.209 0.791 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.241 0.759 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.224 0.776 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.199 0.801 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.595 28.767 -16.386 34.761 hybrid contribution -0.640 -0.265 1.201 1.386 sum 9.956 28.502 -15.184 33.795 Atomic orbital electron populations 1.20848 0.86480 1.04800 1.04227 1.19490 0.95940 0.84867 1.00500 1.24922 0.93176 1.01365 1.18303 1.85251 1.08489 1.01144 1.80847 1.21656 0.83772 0.95789 0.82735 1.91001 1.48560 1.42386 1.52822 1.46151 1.06391 1.07815 1.65044 1.21631 1.00135 0.82405 0.96746 1.21968 1.03187 0.95848 0.98871 1.20232 0.78841 0.86620 0.83967 1.90742 1.53957 1.66131 1.31139 1.45901 1.61009 1.21440 1.08691 1.22113 0.98629 0.84323 0.98469 1.22458 0.86009 0.98868 0.90181 0.87763 1.86550 1.26349 1.66010 1.57302 1.21175 0.97466 0.92151 0.88917 1.42568 1.72339 1.22864 1.01783 1.19036 1.29940 0.94906 0.94034 0.89245 1.24684 1.00379 0.96942 0.97025 1.69702 1.46228 1.22134 1.19902 0.86532 0.78436 0.80613 0.82959 1.21100 1.21696 1.19882 0.89441 0.88986 0.90160 0.79076 0.87707 0.87682 0.88043 0.88168 0.75888 0.90094 0.90736 0.77579 0.94429 0.95024 0.80114 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.25 9.70 36.01 0.35 0.10 16 2 C 0.10 0.54 6.59 -82.51 -0.54 -0.01 16 3 C -0.24 -1.16 11.24 28.82 0.32 -0.83 16 4 S 0.00 0.00 22.97 -107.50 -2.47 -2.47 16 5 C 0.48 4.91 8.27 53.82 0.45 5.36 16 6 O -0.47 -6.44 17.55 5.07 0.09 -6.35 16 7 N -0.53 -4.09 2.60 -117.28 -0.31 -4.39 16 8 C 0.12 0.89 4.56 -4.05 -0.02 0.87 16 9 C -0.16 -1.12 6.02 -27.88 -0.17 -1.29 16 10 C 0.52 5.23 7.83 -10.98 -0.09 5.14 16 11 O -0.54 -7.40 15.98 5.56 0.09 -7.31 16 12 N -0.72 -6.85 5.45 -60.29 -0.33 -7.18 16 13 C 0.09 1.00 5.34 -4.04 -0.02 0.98 16 14 C 0.08 1.12 3.09 -26.73 -0.08 1.04 16 15 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 16 O -0.56 -7.66 13.03 -35.23 -0.46 -8.12 16 17 C 0.13 2.32 5.90 -4.04 -0.02 2.30 16 18 N -0.75 -17.36 5.35 -59.91 -0.32 -17.68 16 19 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 23 Si 0.88 22.04 27.74 -169.99 -4.71 17.32 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.27 -6.49 6.52 56.52 0.37 -6.12 16 27 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.08 8.10 -51.93 -0.42 -0.34 16 29 H 0.08 0.22 6.19 -51.93 -0.32 -0.10 16 30 H 0.19 0.37 8.06 -52.48 -0.42 -0.06 16 31 H 0.10 0.67 6.08 -51.93 -0.32 0.35 16 32 H 0.10 1.03 7.76 -51.93 -0.40 0.63 16 33 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.41 3.25 8.35 -40.82 -0.34 2.91 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.38 4.28 9.05 45.56 0.41 4.70 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.37 8.42 5.53 -40.82 -0.23 8.20 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -36.58 370.49 -7.15 -43.73 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.01 Total: 8.71 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.08 Total: 6.57 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.18 Total: -57.66 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.28 Total: -21.79 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.47 Total: -2.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.58 -7.15 -43.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667837621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.589 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds