Wall clock time and date at job start Tue Mar 31 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32561 * 121.64535 * 2 1 4 4 S 1.77231 * 105.31794 * 179.97438 * 3 2 1 5 5 C 1.72209 * 94.84622 * 0.02562 * 4 3 2 6 6 O 1.21833 * 127.05351 * 179.97438 * 5 4 3 7 7 N 1.34245 * 105.88553 * 0.02562 * 5 4 3 8 8 C 1.46491 * 121.37722 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47602 * 89.97271 * 8 7 5 10 10 C 1.50703 * 109.47428 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99941 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00034 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00206 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47138 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47034 * 59.99549 * 14 13 12 16 16 O 1.42901 * 109.47101 * 299.99378 * 14 13 12 17 17 C 1.53004 * 109.46639 * 179.97438 * 14 13 12 18 18 N 1.46500 * 109.46860 * 184.99775 * 17 14 13 19 19 C 1.36934 * 120.00022 * 179.97438 * 18 17 14 20 20 H 1.07994 * 120.00049 * 0.02562 * 19 18 17 21 21 C 1.38819 * 120.00061 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00116 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99769 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46909 * 90.00280 * 23 21 19 25 25 H 1.48498 * 109.46629 * 209.99814 * 23 21 19 26 26 H 1.48492 * 109.47187 * 329.99996 * 23 21 19 27 27 H 1.09001 * 109.46940 * 270.02483 * 1 2 3 28 28 H 1.09003 * 109.46972 * 30.01884 * 1 2 3 29 29 H 1.08995 * 109.46841 * 150.02109 * 1 2 3 30 30 H 1.08004 * 127.34458 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.47176 * 209.97056 * 8 7 5 32 32 H 1.09002 * 109.47337 * 329.96812 * 8 7 5 33 33 H 1.09008 * 109.47313 * 299.99733 * 9 8 7 34 34 H 1.09002 * 109.47149 * 59.99426 * 9 8 7 35 35 H 0.97007 * 120.00039 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.46565 * 299.99633 * 13 12 10 37 37 H 1.08997 * 109.47000 * 59.99396 * 13 12 10 38 38 H 0.96703 * 113.99772 * 300.00586 * 16 14 13 39 39 H 1.09003 * 109.46979 * 304.99594 * 17 14 13 40 40 H 1.08993 * 109.47301 * 65.00160 * 17 14 13 41 41 H 0.97001 * 119.99963 * 359.97438 * 18 17 14 42 42 H 0.96994 * 120.00034 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 0.0008 5 6 3.5607 -1.0574 0.0003 6 8 4.3674 -1.9703 0.0001 7 7 2.2222 -1.1605 -0.0010 8 6 1.5577 -2.4660 -0.0012 9 6 1.3256 -2.9205 1.4411 10 6 0.6414 -4.2633 1.4409 11 8 0.3671 -4.8038 0.3904 12 7 0.3355 -4.8639 2.6079 13 6 -0.3290 -6.1695 2.6077 14 6 -0.5613 -6.6238 4.0502 15 1 -1.1899 -5.8962 4.5635 16 8 0.6942 -6.7286 4.7246 17 6 -1.2559 -7.9871 4.0498 18 7 -1.5855 -8.3675 5.4256 19 6 -2.2167 -9.5569 5.6746 20 1 -2.4711 -10.2147 4.8568 21 6 -2.5295 -9.9172 6.9782 22 7 -3.1357 -11.0606 7.2176 23 14 -2.0899 -8.7790 8.3927 24 1 -3.2162 -7.8444 8.6443 25 1 -1.8324 -9.5838 9.6138 26 1 -0.8720 -8.0041 8.0445 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 1.8154 2.1367 0.0004 31 1 0.6000 -2.3862 -0.5156 32 1 2.1863 -3.1936 -0.5147 33 1 2.2833 -3.0003 1.9556 34 1 0.6969 -2.1929 1.9546 35 1 0.5553 -4.4317 3.4481 36 1 -1.2869 -6.0895 2.0937 37 1 0.2994 -6.8969 2.0939 38 1 1.3058 -7.3600 4.3214 39 1 -2.1706 -7.9286 3.4599 40 1 -0.5908 -8.7337 3.6159 41 1 -1.3566 -7.7769 6.1602 42 1 -3.3539 -11.3125 8.1285 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667837621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:51 Heat of formation + Delta-G solvation = -107.990002 kcal Electronic energy + Delta-G solvation = -24965.669143 eV Core-core repulsion = 21071.910998 eV Total energy + Delta-G solvation = -3893.758145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -42.14798 -40.82253 -39.05114 -38.69988 -36.23381 -35.34124 -34.47876 -33.50379 -32.31478 -30.97940 -29.16417 -27.29363 -25.81683 -24.37758 -23.68604 -22.86783 -21.59212 -21.20610 -19.81214 -19.05943 -18.75354 -18.06341 -17.42684 -17.29443 -17.26665 -16.61010 -16.47879 -16.22956 -15.99555 -15.45059 -15.31343 -15.05556 -14.74533 -14.65135 -14.55619 -14.31831 -14.23262 -13.90664 -13.73721 -13.36864 -13.23599 -13.09079 -12.81270 -12.42438 -12.27985 -12.25213 -12.06087 -11.89849 -11.84183 -11.32160 -11.20121 -11.03916 -10.92664 -10.60095 -10.18522 -9.33284 -8.97401 -8.04743 -5.38796 -0.13121 0.37018 0.86326 1.10346 1.39079 1.42074 1.50259 1.51422 1.63286 2.14541 2.47741 3.24758 3.34778 3.48241 3.52533 3.59488 3.68181 3.86793 3.97565 4.07552 4.18166 4.21332 4.30851 4.43377 4.57071 4.59119 4.65970 4.72739 4.78575 4.80096 4.91249 5.02320 5.16343 5.30190 5.31857 5.72381 5.72991 6.18554 6.21878 6.43725 6.72144 7.06142 7.13035 7.81310 8.00445 9.16435 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.026729 B = 0.001870 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.316826 B =14970.978738 C =15068.046228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.092 3.908 3 C -0.222 4.222 4 S -0.006 6.006 5 C 0.460 3.540 6 O -0.522 6.522 7 N -0.529 5.529 8 C 0.117 3.883 9 C -0.145 4.145 10 C 0.520 3.480 11 O -0.580 6.580 12 N -0.710 5.710 13 C 0.099 3.901 14 C 0.105 3.895 15 H 0.113 0.887 16 O -0.564 6.564 17 C 0.123 3.877 18 N -0.752 5.752 19 C -0.239 4.239 20 H 0.056 0.944 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.251 1.251 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.417 0.583 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.387 0.613 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.369 0.631 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.170 32.628 -15.538 37.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.017 4.017 3 C -0.359 4.359 4 S 0.237 5.763 5 C 0.143 3.857 6 O -0.406 6.406 7 N -0.249 5.249 8 C -0.008 4.008 9 C -0.185 4.185 10 C 0.306 3.694 11 O -0.461 6.461 12 N -0.362 5.362 13 C -0.026 4.026 14 C 0.045 3.955 15 H 0.131 0.869 16 O -0.371 6.371 17 C -0.004 4.004 18 N -0.399 5.399 19 C -0.370 4.370 20 H 0.074 0.926 21 C -0.257 4.257 22 N -0.633 5.633 23 Si 0.786 3.214 24 H -0.201 1.201 25 H -0.224 1.224 26 H -0.176 1.176 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.244 0.756 31 H 0.138 0.862 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.151 0.849 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.236 0.764 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.203 0.797 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.284 32.582 -15.968 37.713 hybrid contribution -0.567 -1.397 0.928 1.770 sum 9.717 31.185 -15.040 35.960 Atomic orbital electron populations 1.20982 0.83914 1.05761 1.05422 1.20015 0.97346 0.83882 1.00502 1.25435 0.90619 1.02780 1.17108 1.85271 1.11409 0.99366 1.80266 1.22029 0.84359 0.96303 0.82987 1.90957 1.50048 1.44209 1.55393 1.46173 1.05776 1.08665 1.64261 1.21568 1.00056 0.82041 0.97148 1.21887 1.03204 0.94741 0.98684 1.20661 0.78151 0.87257 0.83284 1.90733 1.55592 1.67241 1.32487 1.45780 1.60483 1.20701 1.09203 1.21852 0.98788 0.85122 0.96791 1.22175 0.85617 0.96202 0.91471 0.86923 1.86528 1.26419 1.66391 1.57805 1.21414 0.98035 0.94866 0.86081 1.42548 1.71899 1.21259 1.04153 1.19036 1.28950 0.95860 0.93123 0.92589 1.25560 1.01145 0.98821 1.00154 1.69887 1.48452 1.24610 1.20375 0.85349 0.79055 0.78433 0.78588 1.20147 1.22405 1.17601 0.88001 0.86813 0.90429 0.75587 0.86151 0.90592 0.88341 0.84902 0.74630 0.90081 0.91266 0.76377 0.94178 0.95023 0.79733 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.10 9.70 71.24 0.69 0.60 16 2 C 0.09 0.70 6.59 40.72 0.27 0.97 16 3 C -0.22 -1.43 11.24 66.67 0.75 -0.68 16 4 S -0.01 -0.09 22.97 -56.49 -1.30 -1.39 16 5 C 0.46 9.53 8.27 129.87 1.07 10.61 16 6 O -0.52 -15.25 17.55 -4.77 -0.08 -15.33 16 7 N -0.53 -7.51 2.60 -643.43 -1.68 -9.19 16 8 C 0.12 1.71 4.56 86.38 0.39 2.10 16 9 C -0.14 -1.78 6.02 29.85 0.18 -1.60 16 10 C 0.52 9.66 7.83 87.66 0.69 10.34 16 11 O -0.58 -15.44 15.98 -3.03 -0.05 -15.49 16 12 N -0.71 -11.88 5.45 -463.06 -2.52 -14.40 16 13 C 0.10 2.04 5.34 86.38 0.46 2.50 16 14 C 0.11 2.55 3.09 30.60 0.09 2.64 16 15 H 0.11 2.61 8.14 -2.39 -0.02 2.60 16 16 O -0.56 -14.02 13.03 -148.98 -1.94 -15.97 16 17 C 0.12 4.20 5.90 86.38 0.51 4.71 16 18 N -0.75 -33.90 5.35 -343.45 -1.84 -35.74 16 19 C -0.24 -13.51 10.47 84.04 0.88 -12.63 16 20 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 22 N -0.98 -62.92 13.97 21.65 0.30 -62.62 16 23 Si 0.96 45.21 27.74 68.60 1.90 47.11 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 26 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 27 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.11 -0.34 8.10 -2.39 -0.02 -0.36 16 29 H 0.08 0.16 6.19 -2.39 -0.01 0.15 16 30 H 0.23 -0.22 8.06 -2.91 -0.02 -0.24 16 31 H 0.12 1.35 6.08 -2.38 -0.01 1.34 16 32 H 0.08 1.57 7.76 -2.39 -0.02 1.55 16 33 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.42 5.39 8.35 -92.70 -0.77 4.61 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.39 7.94 9.05 -74.06 -0.67 7.27 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.37 16.07 5.53 -92.71 -0.51 15.55 16 42 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -82.24 370.49 -1.68 -83.92 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.93 Total: 22.90 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 6.45 Total: 16.19 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -5.73 Total: -121.95 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -2.07 Total: -46.79 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.30 Total: -1.39 kcal Total: -82.24 -1.68 -83.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667837621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.065 kcal (2) G-P(sol) polarization free energy of solvation -82.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.95 seconds