Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 126.77485 * 2 1 4 4 C 1.41383 * 103.98299 * 180.10002 * 3 2 1 5 5 C 1.50701 * 126.79957 * 179.88628 * 4 3 2 6 6 N 1.46901 * 109.46921 * 94.70567 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47279 * 325.00167 * 7 6 5 9 9 C 1.52995 * 109.46946 * 85.00144 * 7 6 5 10 10 O 1.42904 * 109.47421 * 64.99873 * 9 7 6 11 11 C 1.53000 * 109.47281 * 205.00148 * 7 6 5 12 12 N 1.46504 * 109.47130 * 54.99829 * 11 7 6 13 13 C 1.34773 * 120.00014 * 179.97438 * 12 11 7 14 14 O 1.21275 * 119.99987 * 0.02562 * 13 12 11 15 15 C 1.50708 * 119.99980 * 180.02562 * 13 12 11 16 16 S 1.80991 * 109.47053 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99933 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99892 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99514 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47422 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47124 * 120.00275 * 21 19 17 24 24 H 1.48497 * 109.47019 * 239.99804 * 21 19 17 25 25 N 1.30174 * 106.39727 * 359.61974 * 4 3 2 26 26 O 1.20918 * 111.60331 * 0.24566 * 25 4 3 27 27 H 1.09003 * 109.46971 * 180.30719 * 1 2 3 28 28 H 1.09007 * 109.47399 * 300.29896 * 1 2 3 29 29 H 1.08993 * 109.47266 * 60.30286 * 1 2 3 30 30 H 1.07999 * 128.01233 * 359.95491 * 3 2 1 31 31 H 1.09002 * 109.47060 * 214.70748 * 5 4 3 32 32 H 1.09001 * 109.47380 * 334.70836 * 5 4 3 33 33 H 1.00899 * 111.00283 * 303.95218 * 6 5 4 34 34 H 1.09008 * 109.47118 * 184.99938 * 9 7 6 35 35 H 1.08994 * 109.47291 * 304.99804 * 9 7 6 36 36 H 0.96694 * 114.00021 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.47382 * 175.00193 * 11 7 6 38 38 H 1.09004 * 109.46882 * 295.00598 * 11 7 6 39 39 H 0.97001 * 119.99619 * 0.02562 * 12 11 7 40 40 H 1.09006 * 109.46736 * 300.00406 * 15 13 12 41 41 H 1.08996 * 109.46762 * 59.99898 * 15 13 12 42 42 H 0.97009 * 119.99992 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0024 5 6 4.9210 1.3000 -0.0058 6 7 5.4038 1.4510 1.3734 7 6 6.6723 2.1910 1.4091 8 1 7.2658 1.9374 0.5306 9 6 6.3860 3.6939 1.4145 10 8 5.7090 4.0455 2.6229 11 6 7.4469 1.8148 2.6738 12 7 7.6172 0.3607 2.7278 13 6 8.2747 -0.2029 3.7604 14 8 8.7250 0.4937 4.6452 15 6 8.4503 -1.6986 3.8157 16 16 9.3665 -2.1436 5.3118 17 6 9.4260 -3.8947 5.1247 18 1 8.9694 -4.3617 4.2646 19 6 10.0605 -4.6738 6.0822 20 7 10.6183 -4.1045 7.1298 21 14 10.1230 -6.5302 5.8842 22 1 9.4280 -6.9180 4.6304 23 1 11.5388 -6.9741 5.8224 24 1 9.4525 -7.1744 7.0420 25 7 3.4764 -0.7564 0.0047 26 8 2.3095 -1.0736 0.0062 27 1 -0.3633 -1.0277 0.0055 28 1 -0.3634 0.5185 0.8873 29 1 -0.3633 0.5091 -0.8926 30 1 2.0345 2.1271 -0.0007 31 1 5.6607 0.7549 -0.5921 32 1 4.7632 2.2850 -0.4453 33 1 4.7085 1.8964 1.9532 34 1 7.3255 4.2431 1.3513 35 1 5.7589 3.9474 0.5598 36 1 5.4956 4.9859 2.6948 37 1 8.4253 2.2949 2.6569 38 1 6.8934 2.1486 3.5515 39 1 7.2573 -0.1963 2.0199 40 1 7.4719 -2.1789 3.8327 41 1 9.0035 -2.0321 2.9377 42 1 11.0615 -4.6490 7.7992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676504643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = -25.788479 kcal Electronic energy + Delta-G solvation = -24939.440096 eV Core-core repulsion = 21049.246476 eV Total energy + Delta-G solvation = -3890.193620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.19567 -39.34709 -38.24412 -36.21458 -34.77329 -33.86423 -33.09673 -32.34008 -30.48362 -28.85548 -28.15670 -26.10873 -25.57967 -25.09953 -23.26898 -21.23753 -20.43029 -20.06184 -18.07609 -17.87725 -17.67549 -17.46042 -16.40704 -16.14707 -15.94202 -15.31655 -14.94460 -14.73225 -14.70087 -14.46001 -14.21229 -13.85879 -13.70996 -13.68947 -13.53285 -13.04624 -12.91075 -12.72772 -12.49820 -12.21110 -12.09566 -11.68883 -11.39814 -11.35085 -10.99960 -10.92210 -10.67763 -10.57168 -10.41244 -9.70883 -9.62855 -9.22088 -8.99069 -8.84085 -8.59699 -8.11445 -6.38973 -6.13086 -3.82208 1.18110 1.86620 2.80828 3.17688 3.27723 3.31586 3.35047 3.41621 3.58865 3.79940 3.90815 3.96844 4.21354 4.29377 4.51313 4.63018 4.68546 4.72188 4.78789 4.92083 4.93400 5.03447 5.10111 5.13456 5.19642 5.21928 5.35383 5.38802 5.48373 5.68792 5.70632 5.82052 6.04928 6.09265 6.31145 6.51909 6.84816 7.01640 7.17684 7.69077 7.99974 8.02732 8.44839 8.84627 9.32411 10.94446 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.002630 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.070024 B =10644.813150 C =12784.743307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.033 4.033 3 C -0.234 4.234 4 C 0.018 3.982 5 C 0.137 3.863 6 N -0.672 5.672 7 C 0.079 3.921 8 H 0.097 0.903 9 C 0.048 3.952 10 O -0.565 6.565 11 C 0.138 3.862 12 N -0.726 5.726 13 C 0.531 3.469 14 O -0.525 6.525 15 C -0.151 4.151 16 S -0.063 6.063 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.341 5.341 26 O 0.104 5.896 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.168 0.832 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.357 0.643 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.381 0.619 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.402 0.598 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.903 17.505 -20.152 33.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.256 4.256 4 C -0.141 4.141 5 C 0.007 3.993 6 N -0.306 5.306 7 C -0.031 4.031 8 H 0.115 0.885 9 C -0.033 4.033 10 O -0.370 6.370 11 C 0.013 3.987 12 N -0.380 5.380 13 C 0.316 3.684 14 O -0.400 6.400 15 C -0.302 4.302 16 S 0.164 5.836 17 C -0.680 4.680 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.043 5.043 26 O 0.035 5.965 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.185 0.815 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.177 0.823 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.229 0.771 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.237 0.763 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.817 16.354 -18.386 30.380 hybrid contribution -1.389 0.124 -1.844 2.312 sum -19.206 16.478 -20.230 32.398 Atomic orbital electron populations 1.20347 0.84084 1.04832 1.04015 1.24516 0.96454 0.86247 1.02445 1.22372 0.91494 1.00880 1.10860 1.23334 0.96645 0.90193 1.03928 1.20217 0.90712 0.96957 0.91398 1.60387 1.06137 1.55159 1.08896 1.21995 0.91683 0.89502 0.99924 0.88464 1.22810 0.96612 0.96893 0.86945 1.86513 1.79623 1.30788 1.40076 1.21092 0.98680 0.81793 0.97130 1.45792 1.58786 1.07225 1.26179 1.20251 0.77048 0.90012 0.81039 1.90683 1.48078 1.63922 1.37343 1.23508 1.05525 0.94017 1.07118 1.85345 1.69801 1.06291 1.22165 1.22929 1.42013 0.91700 1.11381 0.90916 1.24991 0.94698 0.99475 0.94521 1.70039 1.34395 1.35805 1.10195 0.86122 0.77912 0.83245 0.78256 1.19600 1.20636 1.20610 1.73909 0.96549 1.16286 1.17582 1.84885 1.11396 1.33217 1.67028 0.89776 0.89127 0.89251 0.81462 0.89063 0.92968 0.82250 0.92480 0.93442 0.77137 0.91587 0.90612 0.76302 0.89297 0.89446 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.45 36.01 0.38 0.11 16 2 C -0.03 -0.25 7.49 -35.30 -0.26 -0.52 16 3 C -0.23 -1.77 11.06 -39.38 -0.44 -2.21 16 4 C 0.02 0.18 6.84 -82.10 -0.56 -0.38 16 5 C 0.14 1.07 6.07 -4.97 -0.03 1.04 16 6 N -0.67 -6.21 5.68 -107.99 -0.61 -6.82 16 7 C 0.08 0.67 2.57 -67.71 -0.17 0.50 16 8 H 0.10 0.70 7.80 -51.93 -0.40 0.29 16 9 C 0.05 0.30 6.72 37.16 0.25 0.54 16 10 O -0.56 -4.19 12.05 -35.23 -0.42 -4.62 16 11 C 0.14 1.78 5.26 -4.04 -0.02 1.76 16 12 N -0.73 -11.17 5.39 -60.29 -0.32 -11.50 16 13 C 0.53 10.94 7.85 -10.98 -0.09 10.86 16 14 O -0.53 -12.86 15.86 5.56 0.09 -12.78 16 15 C -0.15 -3.35 6.16 36.01 0.22 -3.12 16 16 S -0.06 -1.80 20.57 -107.50 -2.21 -4.01 16 17 C -0.53 -15.85 9.50 30.94 0.29 -15.56 16 18 H 0.07 2.07 7.80 -52.49 -0.41 1.66 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -27.04 13.22 55.49 0.73 -26.31 16 21 Si 0.92 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 N -0.34 -4.23 12.07 33.42 0.40 -3.83 16 26 O 0.10 1.13 11.20 17.17 0.19 1.33 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 32 H 0.05 0.29 7.36 -51.93 -0.38 -0.09 16 33 H 0.36 3.51 7.93 -39.29 -0.31 3.20 16 34 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.05 0.21 7.35 -51.93 -0.38 -0.17 16 36 H 0.38 1.19 9.12 45.56 0.42 1.61 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.15 7.39 -51.93 -0.38 0.77 16 39 H 0.40 5.51 8.14 -40.82 -0.33 5.18 16 40 H 0.09 1.88 8.14 -51.91 -0.42 1.46 16 41 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -38.89 376.68 -7.16 -46.05 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.13 Total: 4.54 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.53 Total: -4.94 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.20 Total: -48.45 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.14 Total: -16.06 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.89 -7.16 -46.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.257 kcal (2) G-P(sol) polarization free energy of solvation -38.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds