Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35449 * 126.77485 * 2 1 4 4 C 1.41383 * 103.98299 * 180.10002 * 3 2 1 5 5 C 1.50701 * 126.79957 * 179.88628 * 4 3 2 6 6 N 1.46901 * 109.46921 * 94.70567 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47279 * 325.00167 * 7 6 5 9 9 C 1.52995 * 109.46946 * 85.00144 * 7 6 5 10 10 O 1.42904 * 109.47421 * 64.99873 * 9 7 6 11 11 C 1.53000 * 109.47281 * 205.00148 * 7 6 5 12 12 N 1.46504 * 109.47130 * 54.99829 * 11 7 6 13 13 C 1.34773 * 120.00014 * 179.97438 * 12 11 7 14 14 O 1.21275 * 119.99987 * 0.02562 * 13 12 11 15 15 C 1.50708 * 119.99980 * 180.02562 * 13 12 11 16 16 S 1.80991 * 109.47053 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99933 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99892 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99514 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47422 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47124 * 120.00275 * 21 19 17 24 24 H 1.48497 * 109.47019 * 239.99804 * 21 19 17 25 25 N 1.30174 * 106.39727 * 359.61974 * 4 3 2 26 26 O 1.20918 * 111.60331 * 0.24566 * 25 4 3 27 27 H 1.09003 * 109.46971 * 180.30719 * 1 2 3 28 28 H 1.09007 * 109.47399 * 300.29896 * 1 2 3 29 29 H 1.08993 * 109.47266 * 60.30286 * 1 2 3 30 30 H 1.07999 * 128.01233 * 359.95491 * 3 2 1 31 31 H 1.09002 * 109.47060 * 214.70748 * 5 4 3 32 32 H 1.09001 * 109.47380 * 334.70836 * 5 4 3 33 33 H 1.00899 * 111.00283 * 303.95218 * 6 5 4 34 34 H 1.09008 * 109.47118 * 184.99938 * 9 7 6 35 35 H 1.08994 * 109.47291 * 304.99804 * 9 7 6 36 36 H 0.96694 * 114.00021 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.47382 * 175.00193 * 11 7 6 38 38 H 1.09004 * 109.46882 * 295.00598 * 11 7 6 39 39 H 0.97001 * 119.99619 * 0.02562 * 12 11 7 40 40 H 1.09006 * 109.46736 * 300.00406 * 15 13 12 41 41 H 1.08996 * 109.46762 * 59.99898 * 15 13 12 42 42 H 0.97009 * 119.99992 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0024 5 6 4.9210 1.3000 -0.0058 6 7 5.4038 1.4510 1.3734 7 6 6.6723 2.1910 1.4091 8 1 7.2658 1.9374 0.5306 9 6 6.3860 3.6939 1.4145 10 8 5.7090 4.0455 2.6229 11 6 7.4469 1.8148 2.6738 12 7 7.6172 0.3607 2.7278 13 6 8.2747 -0.2029 3.7604 14 8 8.7250 0.4937 4.6452 15 6 8.4503 -1.6986 3.8157 16 16 9.3665 -2.1436 5.3118 17 6 9.4260 -3.8947 5.1247 18 1 8.9694 -4.3617 4.2646 19 6 10.0605 -4.6738 6.0822 20 7 10.6183 -4.1045 7.1298 21 14 10.1230 -6.5302 5.8842 22 1 9.4280 -6.9180 4.6304 23 1 11.5388 -6.9741 5.8224 24 1 9.4525 -7.1744 7.0420 25 7 3.4764 -0.7564 0.0047 26 8 2.3095 -1.0736 0.0062 27 1 -0.3633 -1.0277 0.0055 28 1 -0.3634 0.5185 0.8873 29 1 -0.3633 0.5091 -0.8926 30 1 2.0345 2.1271 -0.0007 31 1 5.6607 0.7549 -0.5921 32 1 4.7632 2.2850 -0.4453 33 1 4.7085 1.8964 1.9532 34 1 7.3255 4.2431 1.3513 35 1 5.7589 3.9474 0.5598 36 1 5.4956 4.9859 2.6948 37 1 8.4253 2.2949 2.6569 38 1 6.8934 2.1486 3.5515 39 1 7.2573 -0.1963 2.0199 40 1 7.4719 -2.1789 3.8327 41 1 9.0035 -2.0321 2.9377 42 1 11.0615 -4.6490 7.7992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676504643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = -58.853601 kcal Electronic energy + Delta-G solvation = -24940.873907 eV Core-core repulsion = 21049.246476 eV Total energy + Delta-G solvation = -3891.627431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.87207 -40.67419 -39.20120 -36.79487 -35.79864 -34.60575 -34.54907 -33.95361 -31.67286 -30.14410 -28.60268 -27.71537 -26.69509 -26.26376 -23.91883 -22.00273 -21.60738 -21.06780 -19.80935 -18.67844 -18.49204 -18.09760 -17.75409 -17.42673 -16.89331 -16.72669 -16.47023 -16.14832 -15.64029 -15.57327 -15.07807 -14.72644 -14.65633 -14.53321 -14.30088 -14.25599 -13.94865 -13.73808 -13.43949 -13.21024 -13.17114 -12.92200 -12.81103 -12.71713 -12.57783 -12.33312 -11.96071 -11.71932 -11.20349 -11.16571 -10.97867 -10.87850 -10.29498 -10.21676 -10.01869 -9.47210 -8.67751 -8.35623 -6.13857 0.57089 1.24244 1.26661 1.40532 1.45998 1.58468 1.64727 2.25970 2.28902 2.35444 2.98029 2.99880 3.25611 3.32817 3.44269 3.66686 3.80018 3.94705 4.10351 4.15887 4.25097 4.27005 4.30589 4.36756 4.48990 4.56379 4.57195 4.62815 4.71873 4.74543 4.76005 4.92631 4.99464 5.05192 5.28511 5.40865 5.49964 5.90033 6.19283 6.28984 6.57365 6.90955 7.05315 7.29352 7.37716 8.74076 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.002630 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.070024 B =10644.813150 C =12784.743307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.035 4.035 3 C -0.237 4.237 4 C 0.011 3.989 5 C 0.141 3.859 6 N -0.688 5.688 7 C 0.088 3.912 8 H 0.117 0.883 9 C 0.053 3.947 10 O -0.589 6.589 11 C 0.136 3.864 12 N -0.700 5.700 13 C 0.530 3.470 14 O -0.570 6.570 15 C -0.128 4.128 16 S -0.148 6.148 17 C -0.547 4.547 18 H 0.079 0.921 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.001 2.999 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.272 1.272 25 N -0.389 5.389 26 O 0.077 5.923 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.197 0.803 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.353 0.647 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.399 0.601 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.414 0.586 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.504 17.983 -22.538 35.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 C -0.259 4.259 4 C -0.148 4.148 5 C 0.012 3.988 6 N -0.321 5.321 7 C -0.023 4.023 8 H 0.135 0.865 9 C -0.027 4.027 10 O -0.398 6.398 11 C 0.012 3.988 12 N -0.352 5.352 13 C 0.316 3.684 14 O -0.450 6.450 15 C -0.279 4.279 16 S 0.080 5.920 17 C -0.695 4.695 18 H 0.098 0.902 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.822 3.178 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.197 1.197 25 N -0.095 5.095 26 O 0.012 5.988 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.214 0.786 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.250 0.750 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.474 16.857 -20.828 33.124 hybrid contribution -0.994 0.099 -1.160 1.531 sum -20.468 16.955 -21.988 34.495 Atomic orbital electron populations 1.20562 0.81281 1.05616 1.05677 1.25324 0.98013 0.85566 1.00908 1.22751 0.90424 1.02185 1.10524 1.23826 0.98292 0.89840 1.02843 1.20283 0.89836 0.98148 0.90547 1.60280 1.06301 1.55667 1.09891 1.21942 0.91099 0.91308 0.97902 0.86514 1.22792 0.97635 0.94830 0.87467 1.86472 1.79844 1.32620 1.40868 1.21262 0.99131 0.79513 0.98886 1.45606 1.56408 1.08741 1.24493 1.20018 0.77492 0.89169 0.81726 1.90668 1.50446 1.64489 1.39351 1.23349 1.05018 0.95567 1.03997 1.85490 1.71775 1.07488 1.27292 1.23227 1.42564 0.91699 1.11979 0.90250 1.26151 0.93789 1.05424 0.93832 1.70192 1.35146 1.38168 1.11213 0.84880 0.78415 0.75688 0.78784 1.18283 1.19618 1.19750 1.73896 0.97514 1.17965 1.20144 1.84821 1.11510 1.34640 1.67817 0.89496 0.87696 0.87070 0.78624 0.89289 0.89893 0.82699 0.91541 0.90713 0.75105 0.91736 0.92956 0.74960 0.88192 0.87499 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.45 71.24 0.74 0.38 16 2 C -0.03 -0.49 7.49 25.04 0.19 -0.30 16 3 C -0.24 -3.11 11.06 22.40 0.25 -2.86 16 4 C 0.01 0.20 6.84 43.58 0.30 0.50 16 5 C 0.14 1.87 6.07 85.56 0.52 2.39 16 6 N -0.69 -11.41 5.68 -495.56 -2.81 -14.22 16 7 C 0.09 1.29 2.57 44.91 0.12 1.40 16 8 H 0.12 1.29 7.80 -2.39 -0.02 1.28 16 9 C 0.05 0.50 6.72 71.98 0.48 0.98 16 10 O -0.59 -7.65 12.05 -148.98 -1.80 -9.44 16 11 C 0.14 3.42 5.26 86.38 0.45 3.87 16 12 N -0.70 -21.07 5.39 -463.06 -2.50 -23.56 16 13 C 0.53 22.08 7.85 87.66 0.69 22.76 16 14 O -0.57 -28.80 15.86 -3.01 -0.05 -28.85 16 15 C -0.13 -5.70 6.16 71.24 0.44 -5.26 16 16 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 17 C -0.55 -32.94 9.50 67.95 0.65 -32.29 16 18 H 0.08 4.51 7.80 -2.91 -0.02 4.48 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -57.75 13.22 21.65 0.29 -57.46 16 21 Si 1.00 45.49 29.55 68.60 2.03 47.52 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 N -0.39 -9.63 12.07 -49.57 -0.60 -10.23 16 26 O 0.08 1.70 11.20 71.61 0.80 2.50 16 27 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.09 1.23 8.05 -2.39 -0.02 1.21 16 32 H 0.08 0.60 7.36 -2.39 -0.02 0.58 16 33 H 0.35 6.37 7.93 -89.69 -0.71 5.66 16 34 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.07 0.34 7.35 -2.39 -0.02 0.33 16 36 H 0.40 1.69 9.12 -74.06 -0.68 1.01 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.60 7.39 -2.39 -0.02 1.58 16 39 H 0.41 10.76 8.14 -92.71 -0.75 10.01 16 40 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 41 H 0.11 4.32 8.14 -2.40 -0.02 4.30 16 42 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -88.28 376.68 -1.57 -89.86 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -1.06 Total: 20.97 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 5.29 Total: -7.20 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -5.62 Total: -105.47 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.04 Total: -35.79 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -88.28 -1.57 -89.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.005 kcal (2) G-P(sol) polarization free energy of solvation -88.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds