Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35449 * 126.77277 * 2 1 4 4 C 1.41383 * 103.98091 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.80214 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47115 * 94.99860 * 5 4 3 7 7 C 1.46905 * 111.00168 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46705 * 35.00281 * 7 6 5 9 9 C 1.52997 * 109.47161 * 275.00642 * 7 6 5 10 10 O 1.42906 * 109.46864 * 294.99555 * 9 7 6 11 11 C 1.52997 * 109.47150 * 155.00133 * 7 6 5 12 12 N 1.46505 * 109.47212 * 305.00258 * 11 7 6 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 7 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47156 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00151 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00054 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00100 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47203 * 90.00024 * 21 19 17 23 23 H 1.48506 * 109.46989 * 210.00023 * 21 19 17 24 24 H 1.48506 * 109.47313 * 329.99924 * 21 19 17 25 25 N 1.30175 * 106.39863 * 0.26327 * 4 3 2 26 26 O 1.20926 * 111.60171 * 359.53182 * 25 4 3 27 27 H 1.08993 * 109.47192 * 89.99601 * 1 2 3 28 28 H 1.09000 * 109.47242 * 210.00118 * 1 2 3 29 29 H 1.08999 * 109.47027 * 329.99764 * 1 2 3 30 30 H 1.07996 * 128.01384 * 359.94930 * 3 2 1 31 31 H 1.09007 * 109.46857 * 335.00208 * 5 4 3 32 32 H 1.08997 * 109.47195 * 215.00561 * 5 4 3 33 33 H 1.00897 * 111.00371 * 303.95512 * 6 5 4 34 34 H 1.09002 * 109.47444 * 54.99740 * 9 7 6 35 35 H 1.09003 * 109.46810 * 174.99617 * 9 7 6 36 36 H 0.96702 * 113.99504 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.47153 * 185.00250 * 11 7 6 38 38 H 1.09001 * 109.46832 * 65.00441 * 11 7 6 39 39 H 0.96996 * 119.99606 * 0.02562 * 12 11 7 40 40 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 41 41 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 42 42 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9211 1.3000 0.0014 6 7 5.4038 1.4436 1.3814 7 6 6.6723 2.1833 1.4212 8 1 6.6718 2.9475 0.6439 9 6 7.8342 1.2164 1.1849 10 8 7.9059 0.2847 2.2661 11 6 6.8323 2.8481 2.7899 12 7 5.6605 3.6825 3.0675 13 6 5.5808 4.3687 4.2246 14 8 6.4793 4.2960 5.0360 15 6 4.3757 5.2275 4.5099 16 16 4.5649 6.0138 6.1292 17 6 3.0606 6.9284 6.2029 18 1 2.3597 6.8820 5.3825 19 6 2.7769 7.7093 7.3147 20 7 3.6318 7.7670 8.3139 21 14 1.1825 8.6794 7.3925 22 1 0.1253 7.8448 8.0178 23 1 1.3887 9.9064 8.2031 24 1 0.7659 9.0582 6.0183 25 7 3.4764 -0.7564 -0.0048 26 8 2.3095 -1.0736 0.0006 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 2.0345 2.1271 -0.0008 31 1 4.7632 2.2873 -0.4328 32 1 5.6608 0.7580 -0.5878 33 1 4.7085 1.8859 1.9635 34 1 7.6744 0.6776 0.2509 35 1 8.7672 1.7770 1.1259 36 1 8.6218 -0.3601 2.1827 37 1 7.7284 3.4687 2.7899 38 1 6.9220 2.0804 3.5584 39 1 4.9417 3.7404 2.4187 40 1 4.2867 5.9955 3.7416 41 1 3.4793 4.6073 4.5093 42 1 3.4334 8.3125 9.0911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676504644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -21.045356 kcal Electronic energy + Delta-G solvation = -24998.048525 eV Core-core repulsion = 21108.060583 eV Total energy + Delta-G solvation = -3889.987942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 26.62 seconds Orbital eigenvalues (eV) -45.18430 -39.54853 -38.12867 -36.17574 -34.87640 -33.86290 -33.09326 -32.43654 -30.58979 -29.00125 -28.11716 -26.29023 -25.62903 -25.11682 -23.25703 -20.87247 -20.57930 -20.33599 -17.97151 -17.93038 -17.71418 -17.43909 -16.80234 -16.28529 -15.60783 -15.42279 -14.90832 -14.86183 -14.81012 -14.31428 -14.11596 -14.00821 -13.77901 -13.63958 -13.53493 -13.12622 -13.01463 -12.78413 -12.58635 -12.39863 -11.95303 -11.71734 -11.37584 -11.28662 -11.07295 -11.03419 -10.77132 -10.51380 -10.15162 -9.82644 -9.60497 -9.42338 -9.07980 -8.91757 -8.83560 -8.24206 -6.50659 -6.22340 -3.93020 1.19370 1.87856 2.82033 2.99433 3.08853 3.21400 3.26596 3.30196 3.61397 3.72165 3.90134 4.02083 4.15184 4.19400 4.53340 4.67021 4.74310 4.79355 4.91872 4.99067 5.03275 5.08860 5.12732 5.13072 5.15831 5.19523 5.31309 5.39715 5.50561 5.55338 5.65608 5.73291 5.86373 6.02258 6.10690 6.50032 6.56826 6.92500 7.50025 7.58184 7.62222 8.02289 8.34110 8.58783 9.22760 10.85098 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010063 B = 0.002771 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.879904 B =10102.968485 C =12525.345934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.031 4.031 3 C -0.233 4.233 4 C 0.020 3.980 5 C 0.136 3.864 6 N -0.670 5.670 7 C 0.080 3.920 8 H 0.065 0.935 9 C 0.091 3.909 10 O -0.553 6.553 11 C 0.122 3.878 12 N -0.743 5.743 13 C 0.533 3.467 14 O -0.512 6.512 15 C -0.154 4.154 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.345 5.345 26 O 0.100 5.900 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.171 0.829 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.349 0.651 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.375 0.625 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -14.798 -22.932 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 C -0.255 4.255 4 C -0.140 4.140 5 C 0.007 3.993 6 N -0.305 5.305 7 C -0.030 4.030 8 H 0.083 0.917 9 C 0.012 3.988 10 O -0.358 6.358 11 C -0.002 4.002 12 N -0.399 5.399 13 C 0.319 3.681 14 O -0.386 6.386 15 C -0.304 4.304 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 N -0.048 5.048 26 O 0.032 5.968 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.188 0.812 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.170 0.830 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.221 0.779 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.515 -16.131 -21.170 26.659 hybrid contribution -2.589 2.124 -1.659 3.738 sum -1.075 -14.007 -22.830 26.806 Atomic orbital electron populations 1.20361 0.83951 1.04942 1.04055 1.24526 0.96466 0.86147 1.02322 1.22459 0.91399 1.01128 1.10527 1.23316 0.96646 0.90213 1.03801 1.20248 0.90550 0.97202 0.91332 1.60326 1.05488 1.55992 1.08740 1.21887 0.90212 0.93372 0.97556 0.91688 1.22053 0.96082 0.90843 0.89810 1.86619 1.56726 1.46805 1.45605 1.21389 0.88801 0.93980 0.96027 1.46049 1.22838 1.49951 1.21078 1.20277 0.88119 0.79192 0.80506 1.90715 1.39654 1.62594 1.45595 1.23535 0.98070 1.01419 1.07408 1.85435 1.28456 1.56806 1.12496 1.22862 1.05709 1.32673 1.07195 0.90964 1.24993 0.97726 0.96201 0.94669 1.70018 1.35013 1.38392 1.06815 0.86168 0.81977 0.79096 0.78243 1.20249 1.20746 1.19721 1.73868 0.96600 1.16343 1.17980 1.84851 1.11400 1.33297 1.67261 0.89426 0.89718 0.88853 0.81158 0.92654 0.89258 0.83031 0.93505 0.93156 0.77916 0.90913 0.89319 0.77557 0.89317 0.89250 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.45 36.01 0.38 0.05 16 2 C -0.03 -0.25 7.49 -35.30 -0.26 -0.52 16 3 C -0.23 -1.95 11.06 -39.38 -0.44 -2.38 16 4 C 0.02 0.20 6.84 -82.10 -0.56 -0.36 16 5 C 0.14 1.14 6.07 -4.98 -0.03 1.11 16 6 N -0.67 -6.65 6.24 -107.99 -0.67 -7.33 16 7 C 0.08 0.72 2.60 -67.71 -0.18 0.54 16 8 H 0.07 0.46 7.80 -51.93 -0.41 0.06 16 9 C 0.09 0.75 6.80 37.16 0.25 1.00 16 10 O -0.55 -5.66 12.64 -35.23 -0.45 -6.10 16 11 C 0.12 1.51 5.20 -4.04 -0.02 1.49 16 12 N -0.74 -9.92 4.99 -60.29 -0.30 -10.22 16 13 C 0.53 10.02 7.85 -10.99 -0.09 9.94 16 14 O -0.51 -11.86 15.86 5.56 0.09 -11.77 16 15 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 N -0.35 -4.22 12.07 33.42 0.40 -3.81 16 26 O 0.10 1.08 11.20 17.18 0.19 1.28 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.06 0.35 8.06 -51.92 -0.42 -0.07 16 32 H 0.09 0.74 7.36 -51.93 -0.38 0.35 16 33 H 0.35 3.63 6.71 -39.29 -0.26 3.36 16 34 H 0.05 0.34 7.35 -51.93 -0.38 -0.04 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.37 2.20 9.12 45.56 0.42 2.61 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.35 7.39 -51.93 -0.38 0.97 16 39 H 0.39 4.00 7.37 -40.82 -0.30 3.70 16 40 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -38.00 375.49 -7.15 -45.15 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.05 Total: 5.06 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.53 Total: -4.92 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.16 Total: -46.80 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.16 Total: -16.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.00 -7.15 -45.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.107 kcal (2) G-P(sol) polarization free energy of solvation -38.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.62 seconds