Wall clock time and date at job start Tue Mar 31 2020 07:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.87351 * 2 1 4 4 C 1.54323 * 109.88353 * 238.98422 * 2 1 3 5 5 H 1.09005 * 110.72091 * 336.93127 * 4 2 1 6 6 N 1.46505 * 110.72075 * 100.02602 * 4 2 1 7 7 C 1.34778 * 119.99792 * 205.00283 * 6 4 2 8 8 O 1.21278 * 120.00140 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99723 * 180.02562 * 7 6 4 10 10 S 1.80993 * 109.47026 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99993 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00153 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00523 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99397 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00627 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00544 * 15 13 11 18 18 H 1.48504 * 109.46636 * 60.00103 * 15 13 11 19 19 C 1.55158 * 102.94490 * 218.39141 * 4 2 1 20 20 C 1.54914 * 101.57792 * 35.50005 * 19 4 2 21 21 N 1.47025 * 109.87996 * 121.17691 * 2 1 3 22 22 C 1.34767 * 125.64835 * 298.32058 * 21 2 1 23 23 O 1.21286 * 120.00084 * 0.02562 * 22 21 2 24 24 C 1.50703 * 120.00106 * 180.02562 * 22 21 2 25 25 C 1.50697 * 109.47169 * 179.97438 * 24 22 21 26 26 N 1.34783 * 119.99932 * 179.97438 * 25 24 22 27 27 O 1.21280 * 120.00211 * 0.02562 * 25 24 22 28 28 H 1.08996 * 109.47166 * 181.01040 * 1 2 3 29 29 H 1.08998 * 109.47117 * 301.01901 * 1 2 3 30 30 H 1.08998 * 109.46914 * 61.01364 * 1 2 3 31 31 H 0.96999 * 119.99489 * 25.00355 * 6 4 2 32 32 H 1.09001 * 109.47144 * 59.99673 * 9 7 6 33 33 H 1.09006 * 109.47011 * 299.99863 * 9 7 6 34 34 H 0.97005 * 119.99723 * 179.97438 * 14 13 11 35 35 H 1.09002 * 111.00660 * 153.57330 * 19 4 2 36 36 H 1.09001 * 111.00179 * 277.42838 * 19 4 2 37 37 H 1.08999 * 110.36542 * 204.15041 * 20 19 4 38 38 H 1.08998 * 110.45625 * 81.87738 * 20 19 4 39 39 H 1.08995 * 109.47097 * 300.00070 * 24 22 21 40 40 H 1.09002 * 109.46802 * 60.00239 * 24 22 21 41 41 H 0.97001 * 119.99595 * 0.02562 * 26 25 24 42 42 H 0.97003 * 119.99926 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3040 -1.4414 -1.6221 6 7 2.4555 0.1993 -2.2873 7 6 2.4582 -0.1834 -3.5796 8 8 2.1294 -1.3118 -3.8786 9 6 2.8709 0.7907 -4.6529 10 16 2.7709 -0.0157 -6.2702 11 6 3.2911 1.3111 -7.3063 12 1 3.5521 2.2649 -6.8722 13 6 3.3666 1.1302 -8.6804 14 7 3.0490 -0.0325 -9.2095 15 14 3.9174 2.5370 -9.7790 16 1 3.9123 2.0904 -11.1951 17 1 2.9876 3.6836 -9.6186 18 1 5.2899 2.9555 -9.3963 19 6 3.2877 -1.5133 -0.6945 20 6 2.8145 -1.8805 0.7342 21 7 2.0300 -0.7158 1.1829 22 6 1.8085 -0.3648 2.4651 23 8 1.1451 0.6184 2.7188 24 6 2.3851 -1.1939 3.5837 25 6 1.9944 -0.5913 4.9085 26 7 2.3999 -1.1683 6.0571 27 8 1.3142 0.4123 4.9413 28 1 -0.3633 -1.0275 0.0181 29 1 -0.3633 0.5296 0.8807 30 1 -0.3633 0.4980 -0.8989 31 1 2.7189 1.1017 -2.0480 32 1 3.8951 1.1174 -4.4728 33 1 2.2057 1.6541 -4.6353 34 1 3.1014 -0.1589 -10.1699 35 1 3.4852 -2.4093 -1.2830 36 1 4.1655 -0.8679 -0.6616 37 1 3.6716 -2.0358 1.3894 38 1 2.1891 -2.7728 0.7108 39 1 1.9986 -2.2109 3.5186 40 1 3.4717 -1.2120 3.4996 41 1 2.9436 -1.9712 6.0309 42 1 2.1487 -0.7802 6.9099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680437975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:31 Heat of formation + Delta-G solvation = -105.403745 kcal Electronic energy + Delta-G solvation = -25244.797661 eV Core-core repulsion = 21351.151664 eV Total energy + Delta-G solvation = -3893.645997 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -40.92257 -39.82318 -38.84341 -37.36590 -34.29391 -33.98644 -32.44448 -32.09331 -31.35359 -30.10334 -28.75904 -25.68403 -25.33474 -23.51217 -22.02343 -20.96587 -20.54756 -19.21797 -17.89473 -17.85118 -17.66714 -16.93540 -16.46524 -16.29947 -15.82530 -15.60763 -14.97495 -14.82678 -14.79792 -14.16915 -14.06841 -13.93669 -13.78726 -13.34713 -13.18529 -12.99388 -12.71641 -12.62039 -12.43270 -12.20065 -12.03150 -11.77127 -11.36456 -11.07087 -11.04789 -11.01568 -10.78087 -10.51581 -10.07728 -9.85013 -9.74501 -9.48415 -9.08806 -9.03360 -8.91586 -8.27210 -6.52367 -6.23313 -3.94172 2.21375 2.32857 2.42606 2.98624 2.99302 3.19387 3.22779 3.27129 3.30986 3.66814 3.90878 4.18661 4.19486 4.32261 4.51646 4.63267 4.72025 4.81170 4.82678 4.89024 5.07351 5.11311 5.11982 5.23399 5.40583 5.46989 5.60316 5.74120 5.75655 5.85310 5.89993 6.04025 6.10513 6.11756 6.35304 6.53509 6.85281 7.16833 7.57651 7.60499 7.82827 7.99072 8.33437 8.52060 9.22108 10.84008 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.037194 B = 0.001954 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.619659 B =14328.511659 C =14544.698735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 H 0.081 0.919 4 C 0.141 3.859 5 H 0.109 0.891 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.283 1.283 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.147 4.147 20 C 0.098 3.902 21 N -0.618 5.618 22 C 0.529 3.471 23 O -0.491 6.491 24 C -0.163 4.163 25 C 0.515 3.485 26 N -0.861 5.861 27 O -0.496 6.496 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.269 0.731 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.399 0.601 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -5.831 28.379 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.099 0.901 4 C 0.034 3.966 5 H 0.127 0.873 6 N -0.384 5.384 7 C 0.323 3.677 8 O -0.388 6.388 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.208 1.208 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.186 4.186 20 C -0.025 4.025 21 N -0.355 5.355 22 C 0.315 3.685 23 O -0.363 6.363 24 C -0.206 4.206 25 C 0.297 3.703 26 N -0.426 5.426 27 O -0.368 6.368 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.227 0.773 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.693 -6.570 27.740 28.516 hybrid contribution 1.242 2.169 0.077 2.501 sum 1.935 -4.400 27.817 28.229 Atomic orbital electron populations 1.22136 0.93868 1.02657 1.03394 1.21682 0.95266 0.96352 0.83791 0.90111 1.21926 0.96768 0.91447 0.86455 0.87319 1.45958 1.70849 1.15721 1.05896 1.20327 0.76386 0.88672 0.82338 1.90701 1.45931 1.20521 1.81688 1.23541 1.04235 1.01826 1.00892 1.85371 1.88324 1.18442 0.91081 1.22828 1.52464 0.99346 0.93851 0.90952 1.24989 0.94877 0.96558 0.97119 1.70008 1.45154 1.22636 1.12488 0.86222 0.79195 0.81213 0.78872 1.20804 1.19928 1.19940 1.23251 0.98610 1.02195 0.94536 1.22391 0.95265 0.88897 0.95930 1.48512 1.53422 1.28895 1.04672 1.19557 0.81475 0.85743 0.81752 1.90875 1.37381 1.25999 1.82054 1.21570 1.04463 1.01917 0.92619 1.19992 0.80264 0.84507 0.85555 1.43859 1.57819 1.32467 1.08503 1.90928 1.35555 1.23494 1.86788 0.92263 0.90933 0.91196 0.76552 0.89136 0.89097 0.92117 0.88804 0.89998 0.90284 0.90722 0.85990 0.86038 0.77257 0.76580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.09 37.16 0.34 -1.41 16 2 C 0.13 1.33 3.21 -66.95 -0.21 1.11 16 3 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 4 C 0.14 1.49 2.85 -66.09 -0.19 1.30 16 5 H 0.11 1.34 7.25 -51.93 -0.38 0.96 16 6 N -0.73 -8.92 5.18 -52.02 -0.27 -9.19 16 7 C 0.54 9.30 7.85 -10.98 -0.09 9.22 16 8 O -0.51 -10.86 15.51 5.56 0.09 -10.78 16 9 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 11 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 15 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.15 -1.22 6.77 -24.58 -0.17 -1.38 16 20 C 0.10 0.58 6.69 -2.53 -0.02 0.56 16 21 N -0.62 -5.37 3.06 -163.01 -0.50 -5.87 16 22 C 0.53 5.43 7.64 -10.99 -0.08 5.35 16 23 O -0.49 -7.54 13.23 -18.96 -0.25 -7.79 16 24 C -0.16 -0.89 5.19 -29.03 -0.15 -1.04 16 25 C 0.51 4.23 8.09 -10.98 -0.09 4.14 16 26 N -0.86 -3.07 8.87 31.22 0.28 -2.79 16 27 O -0.50 -7.14 15.02 -18.96 -0.28 -7.43 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.90 6.91 -51.93 -0.36 0.55 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 3.92 8.37 -40.82 -0.34 3.58 16 32 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 33 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.26 7.48 -51.93 -0.39 -0.13 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.12 0.30 7.85 -51.93 -0.41 -0.11 16 41 H 0.40 -0.01 8.83 -40.82 -0.36 -0.37 16 42 H 0.40 1.31 8.93 -40.82 -0.36 0.94 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -40.32 368.64 -8.05 -48.37 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.92 Total: 0.32 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.24 Total: 2.30 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.24 Total: -42.98 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.45 Total: -26.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -40.32 -8.05 -48.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680437975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.035 kcal (2) G-P(sol) polarization free energy of solvation -40.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds