Wall clock time and date at job start Tue Mar 31 2020 07:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.87286 * 2 1 4 4 C 1.54328 * 109.88079 * 121.01658 * 2 1 3 5 5 H 1.09005 * 110.71598 * 215.91844 * 4 2 1 6 6 N 1.46499 * 110.72100 * 339.01577 * 4 2 1 7 7 C 1.34777 * 119.99665 * 202.83847 * 6 4 2 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 4 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 4 10 10 S 1.81005 * 109.46906 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99828 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00390 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99869 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99970 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00277 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46770 * 60.00115 * 15 13 11 17 17 H 1.48499 * 109.47505 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46733 * 300.00357 * 15 13 11 19 19 C 1.55156 * 103.10143 * 97.46836 * 4 2 1 20 20 C 1.55120 * 101.48469 * 35.28187 * 19 4 2 21 21 N 1.47019 * 110.01057 * 238.90291 * 2 1 3 22 22 C 1.34776 * 125.65364 * 59.48625 * 21 2 1 23 23 O 1.21283 * 119.99502 * 0.02562 * 22 21 2 24 24 C 1.50695 * 120.00348 * 180.02562 * 22 21 2 25 25 C 1.50703 * 109.47055 * 179.97438 * 24 22 21 26 26 N 1.34775 * 119.99977 * 179.97438 * 25 24 22 27 27 O 1.21277 * 120.00093 * 0.02562 * 25 24 22 28 28 H 1.08996 * 109.47331 * 298.98502 * 1 2 3 29 29 H 1.08999 * 109.47042 * 58.98603 * 1 2 3 30 30 H 1.08997 * 109.47138 * 178.98483 * 1 2 3 31 31 H 0.97001 * 119.99790 * 22.55559 * 6 4 2 32 32 H 1.09003 * 109.47112 * 299.99065 * 9 7 6 33 33 H 1.08993 * 109.47916 * 59.99687 * 9 7 6 34 34 H 0.97008 * 120.00004 * 179.97438 * 14 13 11 35 35 H 1.09006 * 111.00126 * 153.48480 * 19 4 2 36 36 H 1.08999 * 111.00164 * 277.33604 * 19 4 2 37 37 H 1.09009 * 110.41990 * 204.29108 * 20 19 4 38 38 H 1.08998 * 110.30550 * 82.09088 * 20 19 4 39 39 H 1.08996 * 109.47134 * 299.99821 * 24 22 21 40 40 H 1.08999 * 109.46963 * 60.00027 * 24 22 21 41 41 H 0.96998 * 119.99654 * 0.02562 * 26 25 24 42 42 H 0.96996 * 120.00203 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9624 -0.2774 1.6221 6 7 1.0280 -0.8027 2.2872 7 6 1.3846 -0.9790 3.5750 8 8 2.5552 -1.0974 3.8692 9 6 0.3287 -1.0292 4.6490 10 16 1.1176 -1.2751 6.2595 11 6 -0.3059 -1.2939 7.2977 12 1 -1.2892 -1.1720 6.8682 13 6 -0.1634 -1.4654 8.6677 14 7 1.0352 -1.6135 9.1913 15 14 -1.6724 -1.4846 9.7686 16 1 -2.5695 -2.5951 9.3594 17 1 -1.2533 -1.6805 11.1797 18 1 -2.3941 -0.1929 9.6418 19 6 2.3591 -2.1680 0.6979 20 6 2.8618 -1.8472 -0.7341 21 7 2.0331 -0.7135 -1.1829 22 6 1.7794 -0.3851 -2.4652 23 8 1.0815 0.5738 -2.7189 24 6 2.3629 -1.2094 -3.5837 25 6 1.9304 -0.6361 -4.9086 26 7 2.3352 -1.2135 -6.0572 27 8 1.2189 0.3455 -4.9414 28 1 -0.3634 0.4980 0.8989 29 1 -0.3633 0.5295 -0.8807 30 1 -0.3633 -1.0275 -0.0182 31 1 0.0918 -0.7079 2.0518 32 1 -0.2274 -0.0918 4.6559 33 1 -0.3538 -1.8552 4.4494 34 1 1.1348 -1.7330 10.1488 35 1 3.1357 -2.6551 1.2877 36 1 1.4553 -2.7763 0.6664 37 1 2.7165 -2.7062 -1.3894 38 1 3.9136 -1.5625 -0.7108 39 1 3.4508 -1.1928 -3.5180 40 1 2.0095 -2.2371 -3.5002 41 1 2.9046 -1.9984 -6.0309 42 1 2.0572 -0.8443 -6.9099 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680437977.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:01 Heat of formation + Delta-G solvation = -98.192026 kcal Electronic energy + Delta-G solvation = -25343.896397 eV Core-core repulsion = 21450.563124 eV Total energy + Delta-G solvation = -3893.333273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97419 -39.87895 -38.82344 -37.38130 -34.40351 -34.00798 -32.44326 -31.84676 -31.39674 -30.08294 -28.62344 -25.96377 -25.45252 -23.60751 -22.03911 -21.02118 -20.02614 -19.29111 -18.09362 -17.80005 -17.64994 -16.81368 -16.54021 -16.30487 -15.91648 -15.58786 -15.05917 -14.90684 -14.81231 -14.18166 -14.04928 -13.93471 -13.65960 -13.45815 -13.24022 -12.86522 -12.73930 -12.60470 -12.40608 -12.30877 -12.03164 -11.82120 -11.21869 -11.06809 -11.04728 -11.01667 -10.77971 -10.51385 -10.07867 -9.84746 -9.72544 -9.47321 -9.08525 -9.03029 -8.91857 -8.26873 -6.52087 -6.23132 -3.93964 2.21254 2.34126 2.41916 2.99357 3.00729 3.19302 3.22825 3.27112 3.30872 3.67372 3.90674 4.19079 4.21107 4.30982 4.50460 4.63390 4.73400 4.75791 4.82707 4.94084 5.04794 5.11395 5.12154 5.22474 5.29324 5.44025 5.60642 5.70833 5.78531 5.84809 5.86978 5.94212 6.11238 6.14316 6.35202 6.54649 6.85161 7.16575 7.57878 7.61823 7.82634 7.98825 8.33577 8.53509 9.22261 10.84161 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.039933 B = 0.001978 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.008879 B =14154.241354 C =14559.243290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 H 0.084 0.916 4 C 0.141 3.859 5 H 0.106 0.894 6 N -0.732 5.732 7 C 0.534 3.466 8 O -0.515 6.515 9 C -0.155 4.155 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.145 4.145 20 C 0.098 3.902 21 N -0.617 5.617 22 C 0.529 3.471 23 O -0.491 6.491 24 C -0.163 4.163 25 C 0.515 3.485 26 N -0.860 5.860 27 O -0.496 6.496 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.402 0.598 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.269 0.731 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.399 0.601 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -3.833 -28.417 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.029 3.971 3 H 0.102 0.898 4 C 0.034 3.966 5 H 0.124 0.876 6 N -0.389 5.389 7 C 0.321 3.679 8 O -0.389 6.389 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.184 4.184 20 C -0.025 4.025 21 N -0.355 5.355 22 C 0.315 3.685 23 O -0.363 6.363 24 C -0.206 4.206 25 C 0.297 3.703 26 N -0.426 5.426 27 O -0.368 6.368 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.240 0.760 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.227 0.773 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.281 -2.818 -27.789 28.427 hybrid contribution -2.427 -0.339 -0.058 2.451 sum 2.854 -3.157 -27.847 28.170 Atomic orbital electron populations 1.22164 0.94562 1.02705 1.03620 1.21636 0.95221 0.96372 0.83866 0.89760 1.21819 0.92767 0.95409 0.86557 0.87619 1.46241 1.10036 1.76479 1.06155 1.20351 0.90200 0.74942 0.82438 1.90698 1.19185 1.47294 1.81745 1.23541 1.00994 1.05076 1.00907 1.85372 1.11394 1.94779 0.91637 1.22829 0.93574 1.57913 0.94184 0.90955 1.24987 0.96925 0.94503 0.97119 1.70007 1.21642 1.45847 1.12790 0.86227 0.81604 0.78794 0.78894 1.19941 1.20804 1.19929 1.23275 1.03004 0.97701 0.94413 1.22424 0.95223 0.88924 0.95979 1.48522 1.51330 1.30968 1.04660 1.19551 0.81702 0.85494 0.81735 1.90870 1.36186 1.27194 1.82072 1.21570 1.04337 1.02050 0.92619 1.19991 0.80672 0.84095 0.85555 1.43855 1.55794 1.34490 1.08503 1.90927 1.34622 1.24438 1.86789 0.90969 0.90315 0.92055 0.76017 0.89137 0.89173 0.92118 0.88751 0.90070 0.90314 0.90676 0.85984 0.86042 0.77256 0.76582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 7.94 37.16 0.30 -1.40 16 2 C 0.13 1.32 3.47 -66.95 -0.23 1.09 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.14 1.50 3.14 -66.09 -0.21 1.29 16 5 H 0.11 1.28 7.62 -51.93 -0.40 0.88 16 6 N -0.73 -9.07 4.93 -52.03 -0.26 -9.33 16 7 C 0.53 9.34 7.85 -10.99 -0.09 9.25 16 8 O -0.52 -10.91 15.54 5.55 0.09 -10.83 16 9 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 10 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 11 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 15 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 19 C -0.14 -1.22 6.79 -24.47 -0.17 -1.38 16 20 C 0.10 0.58 6.69 -2.41 -0.02 0.56 16 21 N -0.62 -5.33 3.09 -162.88 -0.50 -5.83 16 22 C 0.53 5.39 7.63 -10.99 -0.08 5.31 16 23 O -0.49 -7.47 13.09 -18.96 -0.25 -7.72 16 24 C -0.16 -0.89 5.19 -29.04 -0.15 -1.04 16 25 C 0.51 4.21 8.09 -10.98 -0.09 4.12 16 26 N -0.86 -3.05 8.87 31.22 0.28 -2.78 16 27 O -0.50 -7.11 15.02 -18.96 -0.28 -7.40 16 28 H 0.07 0.65 6.72 -51.93 -0.35 0.30 16 29 H 0.08 0.94 6.77 -51.93 -0.35 0.58 16 30 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 31 H 0.40 4.14 5.79 -40.82 -0.24 3.90 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.27 7.48 -51.92 -0.39 -0.12 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.12 0.30 7.85 -51.93 -0.41 -0.11 16 41 H 0.40 -0.02 8.83 -40.82 -0.36 -0.38 16 42 H 0.40 1.30 8.93 -40.82 -0.36 0.94 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -40.23 364.31 -8.03 -48.26 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.77 Total: 0.62 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.32 Total: 2.22 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.25 Total: -43.08 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.45 Total: -25.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -40.23 -8.03 -48.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680437977.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.933 kcal (2) G-P(sol) polarization free energy of solvation -40.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds