Wall clock time and date at job start Tue Mar 31 2020 07:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.32478 * 2 1 4 4 C 1.55121 * 110.51245 * 237.86634 * 2 1 3 5 5 C 1.55153 * 101.48662 * 204.24710 * 4 2 1 6 6 H 1.09003 * 110.71747 * 276.82953 * 5 4 2 7 7 N 1.46506 * 110.71931 * 153.73723 * 5 4 2 8 8 C 1.34777 * 119.99920 * 157.44317 * 7 5 4 9 9 O 1.21281 * 119.99939 * 359.97438 * 8 7 5 10 10 C 1.50696 * 119.99769 * 179.97438 * 8 7 5 11 11 C 1.50704 * 109.46928 * 179.97438 * 10 8 7 12 12 N 1.34776 * 119.99993 * 179.97438 * 11 10 8 13 13 O 1.21282 * 120.00180 * 0.02562 * 11 10 8 14 14 C 1.54323 * 103.10236 * 35.28347 * 5 4 2 15 15 N 1.47018 * 107.27113 * 337.89488 * 14 5 4 16 16 C 1.34783 * 125.64997 * 178.97577 * 15 14 5 17 17 O 1.21279 * 120.00114 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.99620 * 359.97438 * 16 15 14 19 19 S 1.80999 * 109.46719 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99877 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99825 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00173 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99970 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99962 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47103 * 90.00110 * 24 22 20 26 26 H 1.48503 * 109.46900 * 209.99758 * 24 22 20 27 27 H 1.48495 * 109.47108 * 329.99797 * 24 22 20 28 28 H 1.08996 * 109.47353 * 299.21528 * 1 2 3 29 29 H 1.08999 * 109.47217 * 59.21540 * 1 2 3 30 30 H 1.09002 * 109.47352 * 179.21558 * 1 2 3 31 31 H 1.09001 * 111.15992 * 86.15192 * 4 2 1 32 32 H 1.09003 * 110.93564 * 322.23982 * 4 2 1 33 33 H 0.96994 * 119.99820 * 337.43658 * 7 5 4 34 34 H 1.09001 * 109.47248 * 299.99862 * 10 8 7 35 35 H 1.09008 * 109.47336 * 59.99971 * 10 8 7 36 36 H 0.97007 * 120.00159 * 0.02562 * 12 11 10 37 37 H 0.96997 * 120.00233 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.88167 * 97.31380 * 14 5 4 39 39 H 1.09003 * 109.87933 * 218.32179 * 14 5 4 40 40 H 1.08999 * 109.47173 * 300.00160 * 18 16 15 41 41 H 1.09002 * 109.46866 * 60.00054 * 18 16 15 42 42 H 0.97000 * 119.99926 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0736 -0.7728 -1.2303 5 6 3.4802 -1.1971 -0.7319 6 1 4.1982 -0.3885 -0.8695 7 7 3.9300 -2.4098 -1.4199 8 6 5.2453 -2.6942 -1.4938 9 8 6.0567 -1.9460 -0.9910 10 6 5.7078 -3.9419 -2.2011 11 6 7.2114 -4.0245 -2.1423 12 7 7.8520 -5.0641 -2.7126 13 8 7.8450 -3.1560 -1.5809 14 6 3.2508 -1.4740 0.7689 15 7 2.0431 -0.7373 1.1690 16 6 1.4960 -0.7356 2.4008 17 8 0.4941 -0.0877 2.6185 18 6 2.1293 -1.5387 3.5076 19 16 1.1694 -1.3321 5.0281 20 6 2.1062 -2.3475 6.1217 21 1 2.9850 -2.8618 5.7615 22 6 1.7150 -2.4864 7.4462 23 7 0.6437 -1.8600 7.8851 24 14 2.7087 -3.5623 8.6057 25 1 3.7600 -2.7439 9.2615 26 1 1.8109 -4.1360 9.6402 27 1 3.3450 -4.6622 7.8373 28 1 -0.3634 0.5016 0.8969 29 1 -0.3633 0.5260 -0.8828 30 1 -0.3634 -1.0276 -0.0141 31 1 2.1475 -0.1226 -2.1021 32 1 1.4562 -1.6447 -1.4464 33 1 3.2811 -3.0080 -1.8222 34 1 5.2762 -4.8166 -1.7145 35 1 5.3865 -3.9097 -3.2422 36 1 7.3453 -5.7590 -3.1614 37 1 8.8198 -5.1172 -2.6751 38 1 3.1043 -2.5419 0.9306 39 1 4.1081 -1.1261 1.3453 40 1 2.1460 -2.5922 3.2283 41 1 3.1489 -1.1902 3.6718 42 1 0.3705 -1.9567 8.8108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680497685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:52 Heat of formation + Delta-G solvation = -102.710821 kcal Electronic energy + Delta-G solvation = -25476.074504 eV Core-core repulsion = 21582.545282 eV Total energy + Delta-G solvation = -3893.529223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76401 -39.96767 -38.75665 -37.19482 -34.50165 -33.96899 -32.40808 -32.21403 -31.36921 -29.40145 -28.62045 -25.87474 -25.45185 -23.28017 -21.83070 -21.21158 -20.50478 -18.93235 -18.01639 -17.66430 -17.57714 -16.90551 -16.57359 -16.21195 -16.11601 -15.53099 -15.01960 -14.78257 -14.49928 -14.20673 -13.99479 -13.80998 -13.62505 -13.60655 -13.09299 -12.86635 -12.62838 -12.52992 -12.24044 -12.08181 -11.92833 -11.64487 -11.22391 -11.05053 -11.03147 -10.96521 -10.73998 -10.54476 -10.04114 -9.79297 -9.78428 -9.51701 -9.09152 -9.04412 -8.49663 -8.21741 -6.47945 -6.19692 -3.89997 2.22712 2.41623 2.47717 2.93438 3.07687 3.24399 3.25206 3.30206 3.33518 3.64409 4.07057 4.21598 4.23678 4.33387 4.52516 4.68555 4.71300 4.79259 4.94520 5.03124 5.10938 5.15523 5.34706 5.42090 5.51566 5.62859 5.66662 5.69593 5.71720 5.92742 6.09699 6.15006 6.17820 6.31242 6.38969 6.65000 6.88382 7.12760 7.61972 7.68038 7.86486 8.01450 8.37683 8.58833 9.25796 10.87757 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.002977 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.387447 B = 9404.666632 C =11788.551147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.134 4.134 5 C 0.137 3.863 6 H 0.107 0.893 7 N -0.725 5.725 8 C 0.511 3.489 9 O -0.488 6.488 10 C -0.167 4.167 11 C 0.514 3.486 12 N -0.861 5.861 13 O -0.495 6.495 14 C 0.092 3.908 15 N -0.622 5.622 16 C 0.552 3.448 17 O -0.511 6.511 18 C -0.148 4.148 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.401 0.599 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.399 0.601 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 -6.952 -28.226 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.173 4.173 5 C 0.032 3.968 6 H 0.125 0.875 7 N -0.379 5.379 8 C 0.295 3.705 9 O -0.359 6.359 10 C -0.210 4.210 11 C 0.296 3.704 12 N -0.427 5.427 13 O -0.366 6.366 14 C -0.033 4.033 15 N -0.361 5.361 16 C 0.341 3.659 17 O -0.385 6.385 18 C -0.299 4.299 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.236 0.764 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.227 0.773 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.476 -4.704 -26.850 28.018 hybrid contribution 1.666 -2.394 0.010 2.917 sum 8.143 -7.099 -26.840 28.932 Atomic orbital electron populations 1.22173 0.93435 1.02810 1.03840 1.21824 0.95679 0.95474 0.83598 0.90608 1.23209 0.94641 1.01333 0.98104 1.21921 0.96446 0.87815 0.90667 0.87504 1.45917 1.07255 1.26043 1.58659 1.19996 0.82462 0.87160 0.80896 1.90907 1.52327 1.48683 1.44011 1.21592 0.95277 0.99725 1.04435 1.19981 0.89605 0.81960 0.78870 1.43862 1.11560 1.26479 1.60779 1.90942 1.67666 1.37610 1.40426 1.22370 0.88378 0.97364 0.95205 1.48514 1.28248 1.49849 1.09450 1.19965 0.83606 0.81211 0.81085 1.90641 1.24496 1.42519 1.80837 1.23531 1.04619 1.01731 0.99979 1.85336 1.36143 1.64468 0.97361 1.22864 1.14791 1.33479 0.97112 0.90970 1.24987 0.95327 0.95978 0.97269 1.70020 1.23118 1.40722 1.16478 0.86170 0.79486 0.80020 0.79852 1.20233 1.20757 1.19706 0.88870 0.92357 0.92627 0.89208 0.89860 0.76408 0.85785 0.85946 0.77293 0.76565 0.91080 0.90582 0.89490 0.89313 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 8.72 37.16 0.32 -1.68 16 2 C 0.14 1.58 3.76 -66.30 -0.25 1.33 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.00 6.15 -24.47 -0.15 -1.15 16 5 C 0.14 1.24 3.27 -66.10 -0.22 1.02 16 6 H 0.11 1.11 7.62 -51.93 -0.40 0.72 16 7 N -0.72 -4.91 5.12 -52.03 -0.27 -5.18 16 8 C 0.51 4.76 7.82 -10.99 -0.09 4.67 16 9 O -0.49 -7.41 13.86 -18.96 -0.26 -7.67 16 10 C -0.17 -0.80 6.19 -29.03 -0.18 -0.98 16 11 C 0.51 4.31 8.09 -10.98 -0.09 4.22 16 12 N -0.86 -3.37 8.87 31.22 0.28 -3.09 16 13 O -0.49 -7.33 15.02 -18.96 -0.28 -7.62 16 14 C 0.09 1.11 6.24 -3.07 -0.02 1.09 16 15 N -0.62 -9.06 3.24 -162.92 -0.53 -9.59 16 16 C 0.55 10.73 7.65 -10.98 -0.08 10.64 16 17 O -0.51 -11.48 13.52 5.56 0.08 -11.40 16 18 C -0.15 -3.15 5.35 36.01 0.19 -2.95 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 24 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.09 1.48 5.89 -51.93 -0.31 1.17 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 33 H 0.40 1.36 8.54 -40.82 -0.35 1.01 16 34 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.12 0.14 8.14 -51.92 -0.42 -0.28 16 36 H 0.40 0.09 8.83 -40.82 -0.36 -0.27 16 37 H 0.40 1.52 8.93 -40.82 -0.36 1.15 16 38 H 0.07 0.83 8.03 -51.93 -0.42 0.42 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 41 H 0.09 1.82 8.14 -51.91 -0.42 1.39 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -41.71 367.67 -8.26 -49.98 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.95 Total: -1.16 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.36 Total: 3.02 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.22 Total: -43.59 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.47 Total: -26.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -41.71 -8.26 -49.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.735 kcal (2) G-P(sol) polarization free energy of solvation -41.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds