Wall clock time and date at job start Tue Mar 31 2020 07:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.41376 * 2 1 4 4 C 1.55126 * 110.34622 * 122.44765 * 2 1 3 5 5 C 1.55162 * 101.48778 * 156.05772 * 4 2 1 6 6 H 1.08999 * 110.86984 * 82.76609 * 5 4 2 7 7 N 1.46495 * 110.72100 * 205.96995 * 5 4 2 8 8 C 1.34777 * 120.00100 * 199.97695 * 7 5 4 9 9 O 1.21285 * 119.99658 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00021 * 180.02562 * 8 7 5 11 11 C 1.50702 * 109.46887 * 179.97438 * 10 8 7 12 12 N 1.34775 * 119.99969 * 179.97438 * 11 10 8 13 13 O 1.21285 * 120.00169 * 0.02562 * 11 10 8 14 14 C 1.54327 * 102.94028 * 324.33435 * 5 4 2 15 15 N 1.47025 * 107.27046 * 22.19447 * 14 5 4 16 16 C 1.34777 * 125.64375 * 181.02591 * 15 14 5 17 17 O 1.21278 * 119.99854 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 0.02562 * 16 15 14 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00234 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99664 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47405 * 90.00153 * 24 22 20 26 26 H 1.48505 * 109.47032 * 209.99913 * 24 22 20 27 27 H 1.48497 * 109.47409 * 329.99921 * 24 22 20 28 28 H 1.08999 * 109.46889 * 180.83946 * 1 2 3 29 29 H 1.08999 * 109.47171 * 300.83428 * 1 2 3 30 30 H 1.08997 * 109.47641 * 60.83705 * 1 2 3 31 31 H 1.09004 * 111.19115 * 37.95386 * 4 2 1 32 32 H 1.09001 * 110.94145 * 274.05562 * 4 2 1 33 33 H 0.97001 * 119.99681 * 19.97885 * 7 5 4 34 34 H 1.09002 * 109.46835 * 299.99409 * 10 8 7 35 35 H 1.08991 * 109.47261 * 59.99885 * 10 8 7 36 36 H 0.97004 * 119.99908 * 0.02562 * 12 11 10 37 37 H 0.97001 * 120.00393 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.87929 * 262.77365 * 14 5 4 39 39 H 1.09002 * 110.00836 * 141.68088 * 14 5 4 40 40 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 41 41 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 42 42 H 0.97005 * 119.99806 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0693 -0.7804 1.2274 5 6 3.4798 -1.1973 0.7331 6 1 4.1954 -0.3871 0.8727 7 7 3.9321 -2.4098 1.4195 8 6 5.2443 -2.7158 1.4526 9 8 6.0506 -1.9869 0.9145 10 6 5.7095 -3.9634 2.1583 11 6 7.2086 -4.0729 2.0491 12 7 7.8507 -5.1165 2.6103 13 8 7.8373 -3.2213 1.4570 14 6 3.2524 -1.4724 -0.7683 15 7 2.0430 -0.7382 -1.1684 16 6 1.4971 -0.7361 -2.4006 17 8 0.4937 -0.0906 -2.6182 18 6 2.1335 -1.5358 -3.5082 19 16 1.1745 -1.3293 -5.0293 20 6 2.1142 -2.3416 -6.1232 21 1 2.9932 -2.8553 -5.7626 22 6 1.7243 -2.4798 -7.4481 23 7 0.6522 -1.8549 -7.8872 24 14 2.7202 -3.5536 -8.6077 25 1 2.1969 -4.9428 -8.5682 26 1 2.6111 -3.0227 -9.9903 27 1 4.1442 -3.5488 -8.1865 28 1 -0.3633 -1.0276 0.0151 29 1 -0.3633 0.5267 0.8824 30 1 -0.3634 0.5007 -0.8973 31 1 1.4549 -1.6556 1.4389 32 1 2.1373 -0.1329 2.1016 33 1 3.2872 -2.9925 1.8502 34 1 5.4240 -3.9144 3.2091 35 1 5.2473 -4.8358 1.6965 36 1 7.3479 -5.7974 3.0841 37 1 8.8157 -5.1868 2.5403 38 1 3.1089 -2.5404 -0.9319 39 1 4.1075 -1.1207 -1.3456 40 1 2.1528 -2.5897 -3.2306 41 1 3.1524 -1.1843 -3.6709 42 1 0.3799 -1.9512 -8.8133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680497686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:00 Heat of formation + Delta-G solvation = -102.463073 kcal Electronic energy + Delta-G solvation = -25493.731977 eV Core-core repulsion = 21600.213498 eV Total energy + Delta-G solvation = -3893.518479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76384 -39.96669 -38.75249 -37.19236 -34.50064 -33.96603 -32.40657 -32.21119 -31.36650 -29.39732 -28.61546 -25.86745 -25.44912 -23.28436 -21.83021 -21.20881 -20.49738 -18.92584 -18.00793 -17.65911 -17.57099 -16.91776 -16.57732 -16.20938 -16.10646 -15.52832 -15.02038 -14.77980 -14.50058 -14.20221 -13.99273 -13.80837 -13.63193 -13.59880 -13.09620 -12.85973 -12.62215 -12.52605 -12.23646 -12.07411 -11.91790 -11.63841 -11.23270 -11.04922 -11.03092 -10.96674 -10.73510 -10.54139 -10.03766 -9.78911 -9.78048 -9.51467 -9.08825 -9.04254 -8.49432 -8.21434 -6.47656 -6.19427 -3.89700 2.23084 2.41954 2.48041 2.93823 3.08086 3.24098 3.25723 3.30379 3.34166 3.64760 4.06842 4.21742 4.23721 4.33220 4.52751 4.68745 4.71773 4.79520 4.94560 5.03670 5.10657 5.15823 5.34599 5.41901 5.51736 5.63144 5.66863 5.69766 5.72216 5.93167 6.09772 6.15221 6.18318 6.31425 6.39287 6.65198 6.88693 7.12953 7.62280 7.68335 7.86831 8.01805 8.37981 8.59191 9.26099 10.88022 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.003012 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.256852 B = 9293.186200 C =11713.665493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.134 4.134 5 C 0.138 3.862 6 H 0.106 0.894 7 N -0.725 5.725 8 C 0.511 3.489 9 O -0.488 6.488 10 C -0.167 4.167 11 C 0.514 3.486 12 N -0.861 5.861 13 O -0.495 6.495 14 C 0.092 3.908 15 N -0.623 5.623 16 C 0.552 3.448 17 O -0.511 6.511 18 C -0.148 4.148 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.401 0.599 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.399 0.601 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.255 -6.890 28.352 30.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.173 4.173 5 C 0.032 3.968 6 H 0.124 0.876 7 N -0.379 5.379 8 C 0.295 3.705 9 O -0.359 6.359 10 C -0.210 4.210 11 C 0.296 3.704 12 N -0.427 5.427 13 O -0.366 6.366 14 C -0.033 4.033 15 N -0.361 5.361 16 C 0.341 3.659 17 O -0.385 6.385 18 C -0.299 4.299 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.227 0.773 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.479 -4.663 26.931 28.090 hybrid contribution 1.665 -2.392 0.009 2.915 sum 8.144 -7.056 26.940 29.015 Atomic orbital electron populations 1.22173 0.93439 1.02812 1.03841 1.21840 0.95711 0.95428 0.83585 0.90536 1.23209 0.94578 1.01312 0.98162 1.21915 0.96344 0.87782 0.90739 0.87607 1.45921 1.07649 1.26558 1.57771 1.19998 0.82421 0.87004 0.81122 1.90910 1.52520 1.49739 1.42710 1.21589 0.95338 0.99698 1.04394 1.19982 0.89509 0.81821 0.79115 1.43861 1.11960 1.27073 1.59787 1.90944 1.67714 1.38706 1.39264 1.22377 0.88314 0.97402 0.95213 1.48526 1.28220 1.49893 1.09457 1.19964 0.83651 0.81163 0.81093 1.90640 1.24424 1.42574 1.80875 1.23533 1.04603 1.01761 0.99968 1.85331 1.36033 1.64642 0.97305 1.22864 1.14726 1.33594 0.97059 0.90967 1.24983 0.95360 0.95949 0.97265 1.70019 1.23175 1.40643 1.16506 0.86174 0.80014 0.79943 0.79426 1.20289 1.20734 1.19653 0.92621 0.92361 0.88872 0.89806 0.89247 0.76410 0.85946 0.85800 0.77299 0.76562 0.91092 0.90576 0.89498 0.89309 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 8.71 37.16 0.32 -1.68 16 2 C 0.14 1.58 3.77 -66.30 -0.25 1.33 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -0.99 6.12 -24.46 -0.15 -1.14 16 5 C 0.14 1.24 3.23 -66.09 -0.21 1.03 16 6 H 0.11 1.09 7.69 -51.93 -0.40 0.69 16 7 N -0.72 -4.91 5.13 -52.03 -0.27 -5.18 16 8 C 0.51 4.77 7.82 -10.99 -0.09 4.68 16 9 O -0.49 -7.42 13.90 -18.96 -0.26 -7.68 16 10 C -0.17 -0.81 6.19 -29.03 -0.18 -0.99 16 11 C 0.51 4.33 8.09 -10.99 -0.09 4.24 16 12 N -0.86 -3.40 8.87 31.22 0.28 -3.12 16 13 O -0.49 -7.36 15.02 -18.96 -0.28 -7.64 16 14 C 0.09 1.12 6.23 -3.06 -0.02 1.10 16 15 N -0.62 -9.09 3.24 -162.92 -0.53 -9.62 16 16 C 0.55 10.76 7.65 -10.98 -0.08 10.67 16 17 O -0.51 -11.50 13.51 5.56 0.08 -11.42 16 18 C -0.15 -3.16 5.35 36.01 0.19 -2.97 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 21 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.48 5.89 -51.93 -0.31 1.17 16 31 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.40 1.34 8.52 -40.82 -0.35 1.00 16 34 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.40 0.10 8.83 -40.82 -0.36 -0.26 16 37 H 0.40 1.54 8.93 -40.82 -0.36 1.17 16 38 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 41 H 0.09 1.83 8.14 -51.91 -0.42 1.40 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -41.79 367.71 -8.26 -50.05 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.96 Total: -1.15 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.36 Total: 3.06 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.22 Total: -43.69 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.47 Total: -26.75 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -41.79 -8.26 -50.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.411 kcal (2) G-P(sol) polarization free energy of solvation -41.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds