Wall clock time and date at job start Tue Mar 31 2020 07:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.87268 * 2 1 4 4 C 1.54424 * 110.00901 * 121.09099 * 2 1 3 5 5 C 1.55155 * 102.89741 * 141.67878 * 4 2 1 6 6 H 1.08989 * 111.00780 * 206.40854 * 5 4 2 7 7 N 1.46505 * 111.00218 * 82.59116 * 5 4 2 8 8 C 1.34774 * 119.99516 * 158.18219 * 7 5 4 9 9 O 1.21277 * 120.00513 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99464 * 179.97438 * 8 7 5 11 11 C 1.50702 * 109.46869 * 179.97438 * 10 8 7 12 12 N 1.34777 * 119.99928 * 179.72354 * 11 10 8 13 13 O 1.21283 * 120.00262 * 0.02562 * 11 10 8 14 14 C 1.54912 * 101.61486 * 324.50114 * 5 4 2 15 15 N 1.47020 * 109.87955 * 238.98879 * 2 1 3 16 16 C 1.34774 * 125.65547 * 61.52270 * 15 2 1 17 17 O 1.21286 * 119.99383 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00567 * 179.97438 * 16 15 2 19 19 S 1.80999 * 109.47171 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99766 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99979 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99788 * 179.97438 * 20 19 18 23 23 N 1.31635 * 120.00101 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99995 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46944 * 60.00389 * 24 22 20 26 26 H 1.48501 * 109.47357 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47195 * 300.00272 * 24 22 20 28 28 H 1.08998 * 109.47222 * 179.56064 * 1 2 3 29 29 H 1.09003 * 109.46871 * 299.55888 * 1 2 3 30 30 H 1.09004 * 109.47058 * 59.56165 * 1 2 3 31 31 H 1.09002 * 110.72318 * 23.33614 * 4 2 1 32 32 H 1.08998 * 110.76197 * 260.03616 * 4 2 1 33 33 H 0.96995 * 119.99901 * 338.18593 * 7 5 4 34 34 H 1.09004 * 109.47210 * 60.00192 * 10 8 7 35 35 H 1.08994 * 109.47551 * 299.99844 * 10 8 7 36 36 H 0.96999 * 120.00047 * 180.27521 * 12 11 10 37 37 H 0.97000 * 120.00317 * 0.28382 * 12 11 10 38 38 H 1.09000 * 110.36675 * 155.86233 * 14 5 4 39 39 H 1.08994 * 110.37002 * 278.18869 * 14 5 4 40 40 H 1.08999 * 109.46340 * 299.99686 * 18 16 15 41 41 H 1.08991 * 109.47068 * 59.99812 * 18 16 15 42 42 H 0.96998 * 119.99833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0584 -0.7493 1.2426 5 6 3.2918 -1.5108 0.6893 6 1 3.4928 -2.4074 1.2755 7 7 4.4697 -0.6407 0.6451 8 6 5.7050 -1.1793 0.6262 9 8 5.8415 -2.3842 0.6452 10 6 6.9165 -0.2843 0.5801 11 6 8.1646 -1.1288 0.5674 12 7 9.3762 -0.5401 0.5218 13 8 8.0788 -2.3383 0.5927 14 6 2.8176 -1.8763 -0.7395 15 7 2.0300 -0.7123 -1.1850 16 6 1.8061 -0.3594 -2.4663 17 8 1.1402 0.6227 -2.7172 18 6 2.3830 -1.1851 -3.5872 19 16 1.9087 -0.4602 -5.1764 20 6 2.6946 -1.5913 -6.2753 21 1 3.2575 -2.4244 -5.8810 22 6 2.5894 -1.4122 -7.6477 23 7 1.9028 -0.3971 -8.1282 24 14 3.4219 -2.6118 -8.8127 25 1 2.8823 -3.9766 -8.5867 26 1 3.1602 -2.2017 -10.2158 27 1 4.8856 -2.6103 -8.5620 28 1 -0.3633 -1.0276 -0.0079 29 1 -0.3633 0.5070 0.8940 30 1 -0.3633 0.5206 -0.8861 31 1 1.3108 -1.4477 1.6187 32 1 2.3563 -0.0460 2.0202 33 1 4.3605 0.3230 0.6296 34 1 6.9245 0.3619 1.4580 35 1 6.8823 0.3276 -0.3212 36 1 10.1794 -1.0837 0.5096 37 1 9.4449 0.4273 0.5013 38 1 3.6742 -2.0284 -1.3961 39 1 2.1937 -2.7696 -0.7152 40 1 3.4698 -1.2009 -3.5045 41 1 1.9989 -2.2031 -3.5235 42 1 1.8296 -0.2717 -9.0873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680497687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:05 Heat of formation + Delta-G solvation = -106.368463 kcal Electronic energy + Delta-G solvation = -25854.486770 eV Core-core repulsion = 21960.798940 eV Total energy + Delta-G solvation = -3893.687830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76313 -39.91984 -38.63306 -37.23314 -34.28166 -33.84518 -32.41799 -32.17509 -31.31116 -29.42890 -28.67941 -26.01833 -25.47040 -23.12742 -22.10570 -20.88707 -20.42520 -18.95515 -17.94434 -17.66208 -17.57332 -16.95060 -16.37063 -16.18822 -16.11440 -15.30774 -14.85775 -14.78568 -14.54893 -14.27038 -13.87586 -13.84722 -13.64129 -13.59677 -13.05332 -12.82025 -12.57662 -12.53072 -12.33114 -12.09049 -11.86936 -11.62723 -11.39372 -11.02697 -11.02343 -10.89748 -10.75060 -10.45812 -9.94649 -9.81414 -9.69818 -9.49863 -9.26296 -9.04618 -8.48524 -8.23680 -6.49592 -6.20660 -3.91296 2.32315 2.51328 2.62761 2.89669 3.06558 3.25330 3.27444 3.30635 3.37742 3.61676 4.12739 4.21834 4.25377 4.31495 4.62600 4.68222 4.79290 4.91272 4.95855 5.06179 5.14506 5.20844 5.27806 5.39647 5.50005 5.54774 5.61541 5.66846 5.67612 5.90686 5.99865 6.16437 6.22845 6.26167 6.48242 6.52539 6.97951 7.22355 7.60963 7.66454 7.95480 8.10415 8.36655 8.56614 9.24876 10.86708 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.003532 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.346367 B = 7925.424372 C =10280.137211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.133 4.133 5 C 0.134 3.866 6 H 0.111 0.889 7 N -0.722 5.722 8 C 0.514 3.486 9 O -0.492 6.492 10 C -0.169 4.169 11 C 0.515 3.485 12 N -0.861 5.861 13 O -0.497 6.497 14 C 0.089 3.911 15 N -0.621 5.621 16 C 0.551 3.449 17 O -0.514 6.514 18 C -0.148 4.148 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.401 0.599 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.403 0.597 37 H 0.399 0.601 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 3.615 23.939 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.091 0.909 4 C -0.172 4.172 5 C 0.029 3.971 6 H 0.129 0.871 7 N -0.376 5.376 8 C 0.298 3.702 9 O -0.364 6.364 10 C -0.212 4.212 11 C 0.298 3.702 12 N -0.426 5.426 13 O -0.368 6.368 14 C -0.035 4.035 15 N -0.359 5.359 16 C 0.339 3.661 17 O -0.388 6.388 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.134 4.134 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.235 0.765 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.234 0.766 37 H 0.227 0.773 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.182 3.488 23.340 24.668 hybrid contribution 1.667 -1.025 -0.577 2.040 sum 8.849 2.463 22.763 24.546 Atomic orbital electron populations 1.22141 0.94577 1.02416 1.03014 1.21507 0.95004 0.96166 0.84263 0.90865 1.23091 0.96757 1.00227 0.97090 1.22037 0.84393 0.94680 0.96031 0.87084 1.45869 1.04965 1.10225 1.76545 1.19942 0.83848 0.89191 0.77225 1.90883 1.85418 1.14200 1.45892 1.21601 0.92806 0.99846 1.06926 1.19968 0.84793 0.88750 0.76731 1.43855 1.08117 1.11435 1.79227 1.90926 1.86201 1.13778 1.45942 1.22742 0.95885 0.89315 0.95576 1.48605 1.53695 1.28762 1.04829 1.19979 0.79736 0.84942 0.81395 1.90692 1.38517 1.26997 1.82617 1.23520 1.03572 1.02727 0.99991 1.85321 1.69469 1.37912 0.90599 1.22833 1.38130 1.14303 0.93111 0.90998 1.24976 0.95203 0.95959 0.97308 1.70009 1.38442 1.28184 1.13748 0.86237 0.79694 0.80613 0.79063 1.19886 1.20785 1.19928 0.92479 0.92033 0.90715 0.88750 0.89388 0.76508 0.86013 0.85699 0.76603 0.77252 0.89911 0.90356 0.89519 0.89372 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.12 37.16 0.34 -1.46 16 2 C 0.13 1.41 3.45 -66.90 -0.23 1.18 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -0.91 6.07 -24.84 -0.15 -1.06 16 5 C 0.13 1.18 3.37 -65.78 -0.22 0.96 16 6 H 0.11 1.02 7.63 -51.94 -0.40 0.62 16 7 N -0.72 -5.84 5.20 -51.73 -0.27 -6.11 16 8 C 0.51 5.39 7.82 -10.99 -0.09 5.30 16 9 O -0.49 -7.73 13.87 -18.96 -0.26 -7.99 16 10 C -0.17 -1.10 6.19 -29.03 -0.18 -1.28 16 11 C 0.52 5.00 8.09 -10.98 -0.09 4.91 16 12 N -0.86 -4.53 8.87 31.22 0.28 -4.26 16 13 O -0.50 -7.84 15.02 -18.96 -0.28 -8.12 16 14 C 0.09 1.04 6.39 -2.52 -0.02 1.02 16 15 N -0.62 -8.52 3.07 -162.95 -0.50 -9.02 16 16 C 0.55 10.42 7.66 -10.99 -0.08 10.33 16 17 O -0.51 -11.45 14.89 5.55 0.08 -11.36 16 18 C -0.15 -3.10 5.16 36.01 0.19 -2.91 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 24 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.09 6.87 -51.93 -0.36 0.73 16 31 H 0.09 0.57 7.86 -51.93 -0.41 0.16 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 2.31 8.64 -40.82 -0.35 1.95 16 34 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.13 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.40 1.99 8.93 -40.82 -0.36 1.63 16 37 H 0.40 0.69 8.83 -40.82 -0.36 0.33 16 38 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.74 7.85 -51.92 -0.41 1.33 16 41 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -41.28 369.24 -8.19 -49.47 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.96 Total: 0.72 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.34 Total: 3.83 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.24 Total: -44.99 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.46 Total: -27.48 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -41.28 -8.19 -49.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.902 kcal (2) G-P(sol) polarization free energy of solvation -41.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds