Wall clock time and date at job start Tue Mar 31 2020 07:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.87370 * 2 1 4 4 C 1.54328 * 110.01120 * 238.90099 * 2 1 3 5 5 C 1.55156 * 102.94212 * 262.70336 * 4 2 1 6 6 H 1.08997 * 111.03697 * 82.58759 * 5 4 2 7 7 N 1.46506 * 111.00205 * 206.42686 * 5 4 2 8 8 C 1.34777 * 119.99914 * 198.65350 * 7 5 4 9 9 O 1.21284 * 119.99989 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00043 * 180.02562 * 8 7 5 11 11 C 1.50699 * 109.47113 * 179.97438 * 10 8 7 12 12 N 1.34773 * 120.00214 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00158 * 359.97438 * 11 10 8 14 14 C 1.54907 * 101.58095 * 324.49955 * 5 4 2 15 15 N 1.47026 * 109.88220 * 121.01699 * 2 1 3 16 16 C 1.34778 * 125.64766 * 300.59954 * 15 2 1 17 17 O 1.21281 * 119.99780 * 0.02562 * 16 15 2 18 18 C 1.50692 * 119.99839 * 180.02562 * 16 15 2 19 19 S 1.81004 * 109.47001 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99924 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99925 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99902 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99886 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47182 * 60.00026 * 24 22 20 26 26 H 1.48506 * 109.46983 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47278 * 299.99983 * 24 22 20 28 28 H 1.09001 * 109.47507 * 300.43517 * 1 2 3 29 29 H 1.09002 * 109.47243 * 60.43761 * 1 2 3 30 30 H 1.09008 * 109.46990 * 180.43591 * 1 2 3 31 31 H 1.09006 * 110.71603 * 144.33881 * 4 2 1 32 32 H 1.09000 * 110.72237 * 21.07283 * 4 2 1 33 33 H 0.96992 * 120.00060 * 18.64806 * 7 5 4 34 34 H 1.08998 * 109.46626 * 299.99259 * 10 8 7 35 35 H 1.08990 * 109.47607 * 59.99679 * 10 8 7 36 36 H 0.97007 * 119.99950 * 0.02562 * 12 11 10 37 37 H 0.97002 * 120.00586 * 179.97438 * 12 11 10 38 38 H 1.09003 * 110.36829 * 155.85050 * 14 5 4 39 39 H 1.09010 * 110.36767 * 278.05738 * 14 5 4 40 40 H 1.08997 * 109.47301 * 299.99438 * 18 16 15 41 41 H 1.08996 * 109.47568 * 59.99687 * 18 16 15 42 42 H 0.96993 * 120.00054 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7490 -1.2417 5 6 2.3574 -2.1680 -0.6903 6 1 1.4524 -2.7747 -0.6592 7 7 3.4018 -2.8279 -1.4779 8 6 3.5475 -4.1663 -1.4169 9 8 2.8143 -4.8245 -0.7096 10 6 4.6222 -4.8450 -2.2265 11 6 4.5731 -6.3310 -1.9809 12 7 5.4471 -7.1462 -2.6038 13 8 3.7471 -6.7935 -1.2226 14 6 2.8598 -1.8465 0.7394 15 7 2.0300 -0.7125 1.1849 16 6 1.7728 -0.3829 2.4662 17 8 1.0735 0.5757 2.7171 18 6 2.3543 -1.2054 3.5870 19 16 1.8316 -0.5146 5.1763 20 6 2.6300 -1.6370 6.2752 21 1 3.2240 -2.4482 5.8809 22 6 2.4964 -1.4780 7.6476 23 7 1.7728 -0.4889 8.1282 24 14 3.3433 -2.6675 8.8125 25 1 4.8104 -2.6210 8.5871 26 1 3.0461 -2.2823 10.2156 27 1 2.8473 -4.0444 8.5610 28 1 -0.3634 0.5206 0.8860 29 1 -0.3634 0.5070 -0.8939 30 1 -0.3633 -1.0277 0.0078 31 1 2.9684 -0.2808 -1.6162 32 1 1.2962 -0.7905 -2.0201 33 1 3.9884 -2.3015 -2.0432 34 1 4.4593 -4.6459 -3.2857 35 1 5.5979 -4.4602 -1.9303 36 1 6.1080 -6.7764 -3.2100 37 1 5.4158 -8.1027 -2.4455 38 1 2.7128 -2.7048 1.3951 39 1 3.9121 -1.5631 0.7170 40 1 2.0020 -2.2335 3.5039 41 1 3.4423 -1.1880 3.5239 42 1 1.6797 -0.3776 9.0872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680497688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:11 Heat of formation + Delta-G solvation = -104.375053 kcal Electronic energy + Delta-G solvation = -25532.910346 eV Core-core repulsion = 21639.308957 eV Total energy + Delta-G solvation = -3893.601389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.75924 -39.96157 -38.72868 -37.23766 -34.51938 -33.96455 -32.38141 -32.17678 -31.31945 -29.30489 -28.63933 -25.98804 -25.43543 -23.37861 -21.85679 -21.03583 -20.50899 -19.05446 -18.01496 -17.75736 -17.59796 -16.81970 -16.42182 -16.19976 -15.99837 -15.29969 -15.08308 -14.75756 -14.51052 -14.30099 -14.00004 -13.81254 -13.67656 -13.51656 -13.10193 -13.05303 -12.65809 -12.52965 -12.45128 -12.06355 -11.73682 -11.55324 -11.31004 -10.99430 -10.98881 -10.84603 -10.71986 -10.53408 -10.03349 -9.79037 -9.76989 -9.54174 -9.22284 -9.01039 -8.50733 -8.19487 -6.45307 -6.16851 -3.87196 2.23596 2.42546 2.46558 2.95176 3.09493 3.25829 3.28227 3.31497 3.34951 3.67049 4.05613 4.23066 4.25863 4.35540 4.52420 4.66471 4.69549 4.79229 4.93889 5.05157 5.10198 5.18209 5.33457 5.39183 5.55726 5.59212 5.64032 5.68916 5.75193 5.95304 6.03623 6.13336 6.21334 6.30897 6.39712 6.56296 6.88941 7.13036 7.64498 7.68037 7.87626 8.02694 8.40410 8.59247 9.28478 10.90595 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.003060 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.697305 B = 9148.599865 C =11564.775127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.132 4.132 5 C 0.136 3.864 6 H 0.106 0.894 7 N -0.724 5.724 8 C 0.510 3.490 9 O -0.485 6.485 10 C -0.166 4.166 11 C 0.513 3.487 12 N -0.861 5.861 13 O -0.493 6.493 14 C 0.091 3.909 15 N -0.621 5.621 16 C 0.552 3.448 17 O -0.512 6.512 18 C -0.148 4.148 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.399 0.601 37 H 0.403 0.597 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -5.988 -30.061 32.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.171 4.171 5 C 0.030 3.970 6 H 0.124 0.876 7 N -0.379 5.379 8 C 0.293 3.707 9 O -0.356 6.356 10 C -0.209 4.209 11 C 0.295 3.705 12 N -0.427 5.427 13 O -0.365 6.365 14 C -0.034 4.034 15 N -0.359 5.359 16 C 0.341 3.659 17 O -0.386 6.386 18 C -0.299 4.299 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.504 5.504 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.235 0.765 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.227 0.773 37 H 0.234 0.766 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.216 -5.068 -28.335 29.675 hybrid contribution 2.233 -1.826 -0.190 2.891 sum 9.449 -6.894 -28.524 30.829 Atomic orbital electron populations 1.22185 0.94490 1.02536 1.03204 1.21423 0.95057 0.96349 0.83667 0.90434 1.22998 1.02405 0.94021 0.97635 1.22053 0.91568 0.93335 0.89997 0.87630 1.45841 1.36721 1.06992 1.48315 1.20003 0.85417 0.82174 0.83082 1.90928 1.43316 1.63366 1.37964 1.21579 1.01544 0.94412 1.03399 1.19987 0.81370 0.88442 0.80732 1.43862 1.37513 1.11289 1.50047 1.90957 1.35234 1.76479 1.33794 1.22630 0.95069 0.90089 0.95602 1.48501 1.51915 1.30565 1.04946 1.19994 0.79976 0.84636 0.81298 1.90688 1.37201 1.28178 1.82504 1.23529 1.03707 1.02705 0.99928 1.85329 1.67183 1.40207 0.90588 1.22830 1.36325 1.16022 0.93094 0.90983 1.24983 0.95262 0.95966 0.97322 1.70008 1.37356 1.29303 1.13723 0.86229 0.79648 0.80626 0.79043 1.19956 1.20818 1.19874 0.90414 0.91963 0.92468 0.89978 0.89179 0.76488 0.85971 0.85848 0.77336 0.76550 0.89723 0.91212 0.89205 0.89412 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.07 37.16 0.34 -1.66 16 2 C 0.14 1.60 3.49 -66.95 -0.23 1.37 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -0.95 6.12 -24.89 -0.15 -1.10 16 5 C 0.14 1.25 3.32 -65.78 -0.22 1.04 16 6 H 0.11 1.21 7.73 -51.93 -0.40 0.80 16 7 N -0.72 -4.73 5.23 -51.73 -0.27 -5.00 16 8 C 0.51 4.76 7.82 -10.99 -0.09 4.67 16 9 O -0.49 -7.57 13.92 -18.96 -0.26 -7.83 16 10 C -0.17 -0.77 6.19 -29.04 -0.18 -0.95 16 11 C 0.51 4.32 8.09 -10.99 -0.09 4.24 16 12 N -0.86 -3.36 8.87 31.22 0.28 -3.08 16 13 O -0.49 -7.45 15.02 -18.97 -0.28 -7.74 16 14 C 0.09 1.10 6.38 -2.53 -0.02 1.09 16 15 N -0.62 -9.21 3.08 -163.02 -0.50 -9.71 16 16 C 0.55 11.00 7.65 -10.99 -0.08 10.92 16 17 O -0.51 -11.89 14.75 5.56 0.08 -11.80 16 18 C -0.15 -3.22 5.16 36.00 0.19 -3.04 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.76 9.50 30.94 0.29 -15.47 16 21 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 23 N -0.87 -26.78 13.22 55.49 0.73 -26.04 16 24 Si 0.92 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.08 1.21 6.73 -51.93 -0.35 0.86 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.08 0.41 8.00 -51.93 -0.42 0.00 16 32 H 0.09 0.52 7.83 -51.93 -0.41 0.11 16 33 H 0.40 1.07 8.51 -40.82 -0.35 0.73 16 34 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.40 0.04 8.83 -40.82 -0.36 -0.32 16 37 H 0.40 1.55 8.93 -40.82 -0.36 1.18 16 38 H 0.08 1.20 7.48 -51.93 -0.39 0.81 16 39 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.09 1.89 7.85 -51.92 -0.41 1.48 16 41 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 42 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -42.74 368.82 -8.19 -50.93 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.94 Total: -1.62 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.34 Total: 3.17 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.24 Total: -43.84 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.47 Total: -27.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -42.74 -8.19 -50.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.446 kcal (2) G-P(sol) polarization free energy of solvation -42.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds