Wall clock time and date at job start Tue Mar 31 2020 07:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47196 * 2 1 4 4 H 1.08997 * 109.87463 * 55.45643 * 3 2 1 5 5 C 1.54319 * 109.87688 * 294.44415 * 3 2 1 6 6 H 1.08995 * 110.72706 * 336.77598 * 5 3 2 7 7 N 1.46501 * 110.72155 * 99.87382 * 5 3 2 8 8 C 1.34772 * 120.00334 * 204.99461 * 7 5 3 9 9 O 1.21286 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.50703 * 120.00313 * 179.97438 * 8 7 5 11 11 S 1.80997 * 109.47138 * 180.02562 * 10 8 7 12 12 C 1.76202 * 100.00032 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99462 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00118 * 179.97438 * 12 11 10 15 15 N 1.31629 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00137 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47065 * 60.00053 * 16 14 12 18 18 H 1.48502 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46877 * 300.00410 * 16 14 12 20 20 C 1.55161 * 102.93912 * 218.23384 * 5 3 2 21 21 C 1.54904 * 101.58308 * 35.50599 * 20 5 3 22 22 N 1.47025 * 110.01177 * 176.55903 * 3 2 1 23 23 C 1.34774 * 125.64637 * 298.46641 * 22 3 2 24 24 O 1.21343 * 120.00117 * 4.60898 * 23 22 3 25 25 C 1.49456 * 119.99644 * 184.61233 * 23 22 3 26 26 N 1.34776 * 119.99662 * 179.97438 * 25 23 22 27 27 O 1.21345 * 119.99871 * 0.02562 * 25 23 22 28 28 H 1.08997 * 109.47308 * 185.05196 * 1 2 3 29 29 H 1.09001 * 109.47266 * 305.05672 * 1 2 3 30 30 H 1.09007 * 109.46588 * 65.05627 * 1 2 3 31 31 H 1.08992 * 109.47421 * 239.99362 * 2 1 3 32 32 H 1.09000 * 109.46964 * 119.99435 * 2 1 3 33 33 H 0.97006 * 120.00159 * 24.99799 * 7 5 3 34 34 H 1.09000 * 109.47365 * 300.00616 * 10 8 7 35 35 H 1.09003 * 109.46741 * 60.00550 * 10 8 7 36 36 H 0.97004 * 119.99874 * 179.97438 * 15 14 12 37 37 H 1.09000 * 111.00230 * 153.58040 * 20 5 3 38 38 H 1.09003 * 111.00740 * 277.42899 * 20 5 3 39 39 H 1.09002 * 110.36923 * 204.15045 * 21 20 5 40 40 H 1.09003 * 110.36867 * 81.82218 * 21 20 5 41 41 H 0.96998 * 120.00053 * 0.02562 * 26 25 23 42 42 H 0.97000 * 119.99577 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6155 1.9857 0.8443 5 6 1.6487 2.1374 -1.3212 6 1 1.4780 1.4025 -2.1077 7 7 0.4635 2.9778 -1.1336 8 6 -0.3341 3.2618 -2.1822 9 8 -0.0709 2.8212 -3.2811 10 6 -1.5537 4.1258 -1.9892 11 16 -2.4111 4.3213 -3.5711 12 6 -3.7544 5.3439 -3.0667 13 1 -3.8416 5.6507 -2.0349 14 6 -4.6998 5.7560 -3.9956 15 7 -4.5932 5.3824 -5.2532 16 14 -6.1236 6.8407 -3.4610 17 1 -5.5953 8.1100 -2.8996 18 1 -6.9863 7.1382 -4.6325 19 1 -6.9213 6.1357 -2.4256 20 6 2.8938 3.0073 -1.6382 21 6 4.0434 2.1020 -1.1299 22 7 3.5079 1.4572 0.0829 23 6 4.2421 0.9624 1.0990 24 8 3.6980 0.3760 2.0114 25 6 5.7266 1.1361 1.1019 26 7 6.4608 0.6418 2.1183 27 8 6.2705 1.7230 0.1897 28 1 -0.3634 -1.0236 0.0905 29 1 -0.3634 0.5903 0.8412 30 1 -0.3633 0.4334 -0.9319 31 1 1.8933 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8900 33 1 0.2527 3.3299 -0.2546 34 1 -2.2228 3.6543 -1.2694 35 1 -1.2504 5.1042 -1.6165 36 1 -5.2541 5.6701 -5.9024 37 1 2.9824 3.1868 -2.7097 38 1 2.8642 3.9475 -1.0874 39 1 4.9193 2.7026 -0.8849 40 1 4.2946 1.3512 -1.8792 41 1 6.0259 0.1730 2.8476 42 1 7.4242 0.7549 2.1204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684875112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:03 Heat of formation + Delta-G solvation = -104.525463 kcal Electronic energy + Delta-G solvation = -25817.248663 eV Core-core repulsion = 21923.640752 eV Total energy + Delta-G solvation = -3893.607911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.30990 -39.84219 -38.76095 -37.80023 -34.62538 -33.89877 -33.51704 -32.44398 -31.24875 -29.18334 -27.80959 -25.70785 -25.39143 -23.42939 -22.53365 -21.29252 -20.62077 -19.87991 -18.30163 -17.89638 -17.54607 -17.02376 -16.49787 -16.29418 -15.95047 -15.42606 -15.01883 -14.81806 -14.71829 -14.50474 -14.22939 -14.01400 -13.77631 -13.44238 -13.14093 -12.82745 -12.64824 -12.42986 -12.37771 -11.99886 -11.92776 -11.67512 -11.40758 -11.22155 -11.06376 -11.04835 -10.80958 -10.73519 -10.37278 -9.96310 -9.84330 -9.48643 -9.14741 -9.07859 -8.94878 -8.26777 -6.52120 -6.23149 -3.94007 1.00390 1.91078 2.78750 2.95110 2.99844 3.21974 3.22578 3.27377 3.31890 3.66214 4.01052 4.17164 4.19164 4.37007 4.60397 4.85327 4.90110 4.96109 5.09328 5.12079 5.15327 5.26069 5.42483 5.53097 5.60660 5.64392 5.71817 5.83097 5.85266 5.88882 5.92685 5.97364 6.07616 6.10741 6.20199 6.46645 6.52842 6.86941 7.28687 7.56986 7.57956 7.60674 8.33413 8.52445 9.22195 10.84143 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.002278 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.423308 B =12289.338250 C =12580.214664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.131 3.869 4 H 0.087 0.913 5 C 0.142 3.858 6 H 0.111 0.889 7 N -0.728 5.728 8 C 0.536 3.464 9 O -0.513 6.513 10 C -0.154 4.154 11 S -0.058 6.058 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.149 4.149 21 C 0.092 3.908 22 N -0.582 5.582 23 C 0.520 3.480 24 O -0.520 6.520 25 C 0.517 3.483 26 N -0.823 5.823 27 O -0.515 6.515 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.414 0.586 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.099 -9.560 15.830 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.028 3.972 4 H 0.104 0.896 5 C 0.036 3.964 6 H 0.129 0.871 7 N -0.383 5.383 8 C 0.323 3.677 9 O -0.387 6.387 10 C -0.304 4.304 11 S 0.168 5.832 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.189 4.189 21 C -0.030 4.030 22 N -0.315 5.315 23 C 0.302 3.698 24 O -0.396 6.396 25 C 0.296 3.704 26 N -0.389 5.389 27 O -0.390 6.390 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.234 0.766 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.244 0.756 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 20.383 -10.225 13.669 26.587 hybrid contribution -1.066 1.226 2.424 2.918 sum 19.317 -8.999 16.092 26.704 Atomic orbital electron populations 1.21724 0.94235 1.02151 1.02621 1.21892 0.96986 0.94895 1.03381 1.21992 0.78891 0.97893 0.98459 0.89558 1.21906 0.85242 0.93139 0.96130 0.87125 1.45942 1.26520 1.53528 1.12271 1.20317 0.83347 0.80188 0.83866 1.90712 1.72334 1.51262 1.24368 1.23536 0.97501 1.01165 1.08240 1.85393 1.27706 1.66505 1.03576 1.22820 1.11637 1.36204 0.97800 0.90976 1.24988 0.97876 0.96189 0.94506 1.70004 1.35326 1.43156 1.01775 0.86229 0.80876 0.80258 0.78163 1.19939 1.20814 1.19937 1.23334 0.93453 0.98621 1.03450 1.22819 0.98224 0.96535 0.85423 1.48263 1.07114 1.56616 1.19555 1.19668 0.87582 0.80336 0.82187 1.90765 1.72731 1.40631 1.35490 1.20052 0.88292 0.79338 0.82758 1.43521 1.11523 1.58835 1.25017 1.90777 1.72982 1.40172 1.35099 0.92272 0.92532 0.91874 0.91478 0.90184 0.76631 0.89134 0.89163 0.92112 0.88576 0.89968 0.87364 0.90418 0.75555 0.75604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.59 37.16 0.36 -1.13 16 2 C -0.13 -1.31 5.39 -26.73 -0.14 -1.46 16 3 C 0.13 1.27 2.69 -66.95 -0.18 1.09 16 4 H 0.09 0.81 7.72 -51.93 -0.40 0.41 16 5 C 0.14 1.54 2.03 -66.10 -0.13 1.40 16 6 H 0.11 1.38 7.19 -51.93 -0.37 1.01 16 7 N -0.73 -8.69 4.88 -52.03 -0.25 -8.94 16 8 C 0.54 9.18 7.85 -10.99 -0.09 9.09 16 9 O -0.51 -10.79 15.51 5.55 0.09 -10.70 16 10 C -0.15 -2.94 6.16 36.01 0.22 -2.71 16 11 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 12 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 13 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 16 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 C -0.15 -1.46 6.77 -24.58 -0.17 -1.63 16 21 C 0.09 0.84 6.23 -2.53 -0.02 0.82 16 22 N -0.58 -5.62 3.07 -163.52 -0.50 -6.12 16 23 C 0.52 5.18 7.73 -11.58 -0.09 5.09 16 24 O -0.52 -5.94 15.30 5.50 0.08 -5.85 16 25 C 0.52 4.45 8.13 -11.58 -0.09 4.35 16 26 N -0.82 -4.01 8.87 30.91 0.27 -3.74 16 27 O -0.52 -5.52 14.55 5.50 0.08 -5.44 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 31 H 0.07 0.66 8.06 -51.93 -0.42 0.25 16 32 H 0.08 0.86 6.61 -51.93 -0.34 0.52 16 33 H 0.40 3.75 8.37 -40.82 -0.34 3.40 16 34 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 35 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.11 1.03 5.89 -51.93 -0.31 0.72 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.41 1.51 8.30 -40.82 -0.34 1.17 16 42 H 0.41 1.18 8.93 -40.82 -0.36 0.81 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -35.19 365.95 -7.13 -42.32 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.77 Total: 3.51 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.13 Total: 2.18 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.25 Total: -43.93 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.25 Total: -21.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.19 -7.13 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684875112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.208 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds