Wall clock time and date at job start Tue Mar 31 2020 07:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47196 * 2 1 4 4 H 1.08997 * 109.87463 * 55.45643 * 3 2 1 5 5 C 1.54319 * 109.87688 * 294.44415 * 3 2 1 6 6 H 1.08995 * 110.72706 * 336.77598 * 5 3 2 7 7 N 1.46501 * 110.72155 * 99.87382 * 5 3 2 8 8 C 1.34772 * 120.00334 * 204.99461 * 7 5 3 9 9 O 1.21286 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.50703 * 120.00313 * 179.97438 * 8 7 5 11 11 S 1.80997 * 109.47138 * 180.02562 * 10 8 7 12 12 C 1.76202 * 100.00032 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99462 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00118 * 179.97438 * 12 11 10 15 15 N 1.31629 * 119.99927 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00137 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47065 * 60.00053 * 16 14 12 18 18 H 1.48502 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.46877 * 300.00410 * 16 14 12 20 20 C 1.55161 * 102.93912 * 218.23384 * 5 3 2 21 21 C 1.54904 * 101.58308 * 35.50599 * 20 5 3 22 22 N 1.47025 * 110.01177 * 176.55903 * 3 2 1 23 23 C 1.34774 * 125.64637 * 298.46641 * 22 3 2 24 24 O 1.21343 * 120.00117 * 4.60898 * 23 22 3 25 25 C 1.49456 * 119.99644 * 184.61233 * 23 22 3 26 26 N 1.34776 * 119.99662 * 179.97438 * 25 23 22 27 27 O 1.21345 * 119.99871 * 0.02562 * 25 23 22 28 28 H 1.08997 * 109.47308 * 185.05196 * 1 2 3 29 29 H 1.09001 * 109.47266 * 305.05672 * 1 2 3 30 30 H 1.09007 * 109.46588 * 65.05627 * 1 2 3 31 31 H 1.08992 * 109.47421 * 239.99362 * 2 1 3 32 32 H 1.09000 * 109.46964 * 119.99435 * 2 1 3 33 33 H 0.97006 * 120.00159 * 24.99799 * 7 5 3 34 34 H 1.09000 * 109.47365 * 300.00616 * 10 8 7 35 35 H 1.09003 * 109.46741 * 60.00550 * 10 8 7 36 36 H 0.97004 * 119.99874 * 179.97438 * 15 14 12 37 37 H 1.09000 * 111.00230 * 153.58040 * 20 5 3 38 38 H 1.09003 * 111.00740 * 277.42899 * 20 5 3 39 39 H 1.09002 * 110.36923 * 204.15045 * 21 20 5 40 40 H 1.09003 * 110.36867 * 81.82218 * 21 20 5 41 41 H 0.96998 * 120.00053 * 0.02562 * 26 25 23 42 42 H 0.97000 * 119.99577 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6155 1.9857 0.8443 5 6 1.6487 2.1374 -1.3212 6 1 1.4780 1.4025 -2.1077 7 7 0.4635 2.9778 -1.1336 8 6 -0.3341 3.2618 -2.1822 9 8 -0.0709 2.8212 -3.2811 10 6 -1.5537 4.1258 -1.9892 11 16 -2.4111 4.3213 -3.5711 12 6 -3.7544 5.3439 -3.0667 13 1 -3.8416 5.6507 -2.0349 14 6 -4.6998 5.7560 -3.9956 15 7 -4.5932 5.3824 -5.2532 16 14 -6.1236 6.8407 -3.4610 17 1 -5.5953 8.1100 -2.8996 18 1 -6.9863 7.1382 -4.6325 19 1 -6.9213 6.1357 -2.4256 20 6 2.8938 3.0073 -1.6382 21 6 4.0434 2.1020 -1.1299 22 7 3.5079 1.4572 0.0829 23 6 4.2421 0.9624 1.0990 24 8 3.6980 0.3760 2.0114 25 6 5.7266 1.1361 1.1019 26 7 6.4608 0.6418 2.1183 27 8 6.2705 1.7230 0.1897 28 1 -0.3634 -1.0236 0.0905 29 1 -0.3634 0.5903 0.8412 30 1 -0.3633 0.4334 -0.9319 31 1 1.8933 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8900 33 1 0.2527 3.3299 -0.2546 34 1 -2.2228 3.6543 -1.2694 35 1 -1.2504 5.1042 -1.6165 36 1 -5.2541 5.6701 -5.9024 37 1 2.9824 3.1868 -2.7097 38 1 2.8642 3.9475 -1.0874 39 1 4.9193 2.7026 -0.8849 40 1 4.2946 1.3512 -1.8792 41 1 6.0259 0.1730 2.8476 42 1 7.4242 0.7549 2.1204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684875112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:02 Heat of formation + Delta-G solvation = -132.830292 kcal Electronic energy + Delta-G solvation = -25818.476053 eV Core-core repulsion = 21923.640752 eV Total energy + Delta-G solvation = -3894.835301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10608 -40.86686 -39.72244 -38.73637 -35.55920 -34.62650 -34.55933 -34.39448 -32.29257 -30.48358 -28.70509 -27.64852 -26.39735 -24.24446 -23.38321 -22.15198 -21.79540 -20.70284 -19.78298 -18.99387 -18.35257 -17.86962 -17.73267 -17.13123 -16.93382 -16.85681 -16.38006 -16.23901 -15.86737 -15.39613 -15.37723 -14.98989 -14.76142 -14.68062 -14.39977 -14.14560 -13.79840 -13.49392 -13.25602 -13.14807 -13.09625 -12.85512 -12.74859 -12.62738 -12.53079 -12.22680 -12.12219 -11.74944 -11.59140 -11.11167 -10.95062 -10.90728 -10.73473 -10.24931 -10.08793 -9.91431 -8.63347 -8.32766 -6.09935 0.28690 1.13986 1.31815 1.44768 1.49066 1.58627 1.62345 2.07187 2.23585 2.30148 2.58732 3.01377 3.25939 3.33960 3.46589 3.56321 3.77461 3.93120 4.05733 4.11633 4.15891 4.31616 4.34898 4.44345 4.55034 4.60606 4.79176 4.83423 4.87550 5.01605 5.05326 5.08206 5.14765 5.35156 5.43698 5.44369 5.59927 5.92874 6.13371 6.21496 6.46939 6.61461 7.00167 7.08833 7.23815 8.75913 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.002278 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.423308 B =12289.338250 C =12580.214664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.137 3.863 4 H 0.097 0.903 5 C 0.143 3.857 6 H 0.094 0.906 7 N -0.702 5.702 8 C 0.543 3.457 9 O -0.558 6.558 10 C -0.130 4.130 11 S -0.148 6.148 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.996 3.004 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.262 1.262 20 C -0.144 4.144 21 C 0.100 3.900 22 N -0.583 5.583 23 C 0.518 3.482 24 O -0.535 6.535 25 C 0.518 3.482 26 N -0.800 5.800 27 O -0.540 6.540 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.416 0.584 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.422 0.578 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.607 -9.113 18.500 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.034 3.966 4 H 0.115 0.885 5 C 0.037 3.963 6 H 0.112 0.888 7 N -0.356 5.356 8 C 0.329 3.671 9 O -0.435 6.435 10 C -0.282 4.282 11 S 0.079 5.921 12 C -0.694 4.694 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.818 3.182 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.187 1.187 20 C -0.183 4.183 21 C -0.022 4.022 22 N -0.316 5.316 23 C 0.301 3.699 24 O -0.413 6.413 25 C 0.296 3.704 26 N -0.367 5.367 27 O -0.417 6.417 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.254 0.746 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 20.937 -9.796 16.424 28.355 hybrid contribution -1.101 0.996 1.704 2.260 sum 19.836 -8.800 18.127 28.275 Atomic orbital electron populations 1.21683 0.94216 1.02535 1.01905 1.21821 0.96877 0.94895 1.02952 1.21893 0.79238 0.97683 0.97800 0.88528 1.21911 0.84905 0.92934 0.96553 0.88786 1.45602 1.25769 1.52441 1.11755 1.19950 0.83250 0.79754 0.84155 1.90708 1.73334 1.53093 1.26344 1.23374 0.97936 1.03029 1.03830 1.85557 1.29335 1.66956 1.10213 1.23172 1.11824 1.36059 0.98334 0.89930 1.26098 1.00973 0.97659 0.94420 1.70173 1.36582 1.44758 1.03201 0.85039 0.76931 0.78337 0.77910 1.18696 1.20536 1.18710 1.23274 0.92969 0.98895 1.03142 1.22757 0.97749 0.96421 0.85247 1.48291 1.07010 1.56559 1.19727 1.19952 0.88253 0.79859 0.81810 1.90758 1.73187 1.41334 1.36016 1.19854 0.87711 0.79591 0.83264 1.43401 1.12082 1.57223 1.23966 1.90774 1.73052 1.41695 1.36224 0.91787 0.91611 0.93728 0.91817 0.90613 0.74618 0.87162 0.87170 0.92051 0.89399 0.89141 0.87243 0.90088 0.74553 0.74131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.59 71.98 0.69 -2.03 16 2 C -0.13 -2.35 5.39 30.60 0.16 -2.19 16 3 C 0.14 2.43 2.69 45.34 0.12 2.55 16 4 H 0.10 1.56 7.72 -2.39 -0.02 1.54 16 5 C 0.14 2.94 2.03 46.18 0.09 3.04 16 6 H 0.09 2.35 7.19 -2.39 -0.02 2.33 16 7 N -0.70 -15.63 4.88 -436.92 -2.13 -17.76 16 8 C 0.54 18.24 7.85 87.66 0.69 18.93 16 9 O -0.56 -23.88 15.51 -3.05 -0.05 -23.92 16 10 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 11 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 12 C -0.55 -30.57 9.50 67.95 0.65 -29.92 16 13 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 14 C 0.01 0.75 5.49 84.86 0.47 1.22 16 15 N -0.91 -55.38 13.22 21.65 0.29 -55.10 16 16 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 C -0.14 -2.65 6.77 31.99 0.22 -2.44 16 21 C 0.10 1.70 6.23 86.85 0.54 2.24 16 22 N -0.58 -10.36 3.07 -789.61 -2.42 -12.78 16 23 C 0.52 9.45 7.73 87.27 0.67 10.13 16 24 O -0.54 -11.27 15.30 -3.22 -0.05 -11.32 16 25 C 0.52 8.01 8.13 87.27 0.71 8.72 16 26 N -0.80 -6.08 8.87 -174.50 -1.55 -7.63 16 27 O -0.54 -10.79 14.55 -3.23 -0.05 -10.84 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 1.01 7.38 -2.38 -0.02 0.99 16 31 H 0.06 1.22 8.06 -2.39 -0.02 1.20 16 32 H 0.08 1.52 6.61 -2.39 -0.02 1.50 16 33 H 0.42 6.65 8.37 -92.70 -0.78 5.88 16 34 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 35 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.93 5.89 -2.39 -0.01 1.91 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.42 2.11 8.30 -92.71 -0.77 1.34 16 42 H 0.42 1.45 8.93 -92.71 -0.83 0.62 16 Total: -1.00 -77.61 365.95 -0.93 -78.54 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -1.28 Total: 19.00 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.45 Total: 5.83 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -5.82 Total: -93.27 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.14 Total: -46.08 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -77.61 -0.93 -78.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684875112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.291 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds