Wall clock time and date at job start Tue Mar 31 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 110.54199 * 2 1 4 4 O 1.21286 * 119.99874 * 118.83554 * 3 2 1 5 5 N 1.34775 * 120.00059 * 298.84219 * 3 2 1 6 6 C 1.46495 * 119.99913 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46938 * 180.02562 * 6 5 3 8 8 N 1.46508 * 109.46981 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99611 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00021 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99772 * 179.97438 * 9 8 7 12 12 S 1.80998 * 109.47273 * 180.02562 * 11 9 8 13 13 C 1.76201 * 100.00041 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99910 * 0.02562 * 13 12 11 15 15 C 1.38802 * 120.00108 * 179.97438 * 13 12 11 16 16 N 1.31628 * 119.99684 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00272 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46897 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47018 * 120.00182 * 17 15 13 20 20 H 1.48494 * 109.47092 * 240.00337 * 17 15 13 21 21 C 1.54784 * 110.42597 * 122.73841 * 2 1 3 22 22 C 1.54480 * 101.69261 * 143.70844 * 21 2 1 23 23 N 1.46764 * 105.47241 * 334.38904 * 22 21 2 24 24 C 1.34420 * 111.30051 * 17.01779 * 23 22 21 25 25 O 1.21283 * 124.93917 * 179.55324 * 24 23 22 26 26 H 1.08996 * 109.47222 * 181.15682 * 1 2 3 27 27 H 1.09002 * 109.47014 * 301.15986 * 1 2 3 28 28 H 1.09000 * 109.46877 * 61.15702 * 1 2 3 29 29 H 0.97003 * 119.99965 * 359.97438 * 5 3 2 30 30 H 1.09005 * 109.47425 * 299.99409 * 6 5 3 31 31 H 1.08998 * 109.47628 * 60.00149 * 6 5 3 32 32 H 1.08997 * 109.47024 * 299.99478 * 7 6 5 33 33 H 1.09002 * 109.47590 * 60.00172 * 7 6 5 34 34 H 0.96993 * 120.00107 * 0.02562 * 8 7 6 35 35 H 1.09003 * 109.47509 * 300.01043 * 11 9 8 36 36 H 1.09009 * 109.46773 * 60.00574 * 11 9 8 37 37 H 0.96997 * 119.99958 * 180.02562 * 16 15 13 38 38 H 1.08997 * 111.17051 * 25.53790 * 21 2 1 39 39 H 1.09002 * 110.83479 * 261.72507 * 21 2 1 40 40 H 1.09003 * 110.24569 * 215.39240 * 22 21 2 41 41 H 1.09004 * 110.32163 * 93.43121 * 22 21 2 42 42 H 0.96999 * 124.34793 * 196.99329 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4112 0.0000 4 8 2.7460 1.8013 0.9201 5 7 1.7680 2.2398 -1.0224 6 6 2.2816 3.6118 -1.0221 7 6 1.8085 4.3337 -2.2854 8 7 2.3216 5.7060 -2.2848 9 6 2.0307 6.5346 -3.3072 10 8 1.3438 6.1443 -4.2274 11 6 2.5580 7.9463 -3.3064 12 16 1.9985 8.8002 -4.8009 13 6 2.7382 10.3791 -4.5463 14 1 3.3281 10.5624 -3.6604 15 6 2.5637 11.3867 -5.4847 16 7 1.8452 11.1630 -6.5647 17 14 3.3485 13.0603 -5.2152 18 1 4.0999 13.0541 -3.9343 19 1 4.2798 13.3562 -6.3334 20 1 2.2902 14.1007 -5.1638 21 6 2.0702 -0.7844 1.2201 22 6 3.3221 -1.4661 0.6247 23 7 3.0596 -1.5781 -0.8149 24 6 2.0594 -0.7638 -1.1937 25 8 1.6453 -0.6536 -2.3283 26 1 -0.3633 -1.0274 0.0207 27 1 -0.3633 0.5318 0.8794 28 1 -0.3633 0.4958 -0.9002 29 1 1.2186 1.9277 -1.7584 30 1 1.9107 4.1384 -0.1427 31 1 3.3712 3.5919 -1.0010 32 1 2.1790 3.8073 -3.1650 33 1 0.7189 4.3537 -2.3061 34 1 2.8713 6.0179 -1.5491 35 1 2.1866 8.4724 -2.4270 36 1 3.6477 7.9270 -3.2849 37 1 1.7235 11.8671 -7.2207 38 1 1.3481 -1.5256 1.5626 39 1 2.3429 -0.1053 2.0279 40 1 3.4565 -2.4557 1.0617 41 1 4.2064 -0.8535 0.8004 42 1 3.5456 -2.1642 -1.4159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:19 Heat of formation + Delta-G solvation = -112.660960 kcal Electronic energy + Delta-G solvation = -24812.271385 eV Core-core repulsion = 20918.310692 eV Total energy + Delta-G solvation = -3893.960693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 6.69 seconds Orbital eigenvalues (eV) -41.72595 -39.51562 -39.06366 -36.97118 -35.94192 -34.20811 -33.54112 -32.43283 -30.37153 -29.32525 -28.01364 -26.03475 -25.48628 -23.69248 -22.46495 -22.05556 -20.51083 -19.89826 -18.19429 -17.85516 -17.78749 -16.66562 -16.29739 -16.18365 -15.66563 -15.62004 -15.40122 -14.98023 -14.80708 -14.52201 -14.23399 -14.17645 -13.96003 -13.85244 -13.21755 -13.17448 -12.97279 -12.76346 -12.57449 -12.41111 -12.10244 -11.93298 -11.74131 -11.65455 -11.07163 -11.02463 -10.76675 -10.57495 -10.21171 -9.81541 -9.68858 -9.55319 -9.48307 -9.08797 -8.99182 -8.24248 -6.50824 -6.22218 -3.92875 1.77196 2.12966 2.50475 2.79841 3.04436 3.11393 3.21626 3.29104 3.34862 3.58562 3.73031 3.79427 4.08885 4.19790 4.28638 4.42386 4.47531 4.70941 4.79580 4.94919 5.07376 5.11399 5.12205 5.13121 5.16630 5.30016 5.43189 5.52869 5.56779 5.61766 5.73450 5.87617 5.93483 6.12488 6.14521 6.38824 6.48845 6.96579 7.59238 7.60917 7.62166 7.67704 8.35112 8.54402 9.23285 10.85284 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.034527 B = 0.001764 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.766587 B =15867.500025 C =16168.067674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.538 3.462 4 O -0.528 6.528 5 N -0.717 5.717 6 C 0.109 3.891 7 C 0.110 3.890 8 N -0.737 5.737 9 C 0.534 3.466 10 O -0.514 6.514 11 C -0.153 4.153 12 S -0.060 6.060 13 C -0.535 4.535 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.118 4.118 22 C 0.098 3.902 23 N -0.727 5.727 24 C 0.530 3.470 25 O -0.515 6.515 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.411 0.589 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -27.405 19.149 33.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C 0.322 3.678 4 O -0.404 6.404 5 N -0.369 5.369 6 C -0.015 4.015 7 C -0.015 4.015 8 N -0.392 5.392 9 C 0.320 3.680 10 O -0.388 6.388 11 C -0.304 4.304 12 S 0.166 5.834 13 C -0.683 4.683 14 H 0.092 0.908 15 C -0.137 4.137 16 N -0.503 5.503 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.155 4.155 22 C -0.027 4.027 23 N -0.382 5.382 24 C 0.314 3.686 25 O -0.390 6.390 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.246 0.754 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.235 0.765 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.349 -27.552 17.558 32.673 hybrid contribution 1.599 1.199 0.991 2.231 sum 1.949 -26.353 18.549 32.286 Atomic orbital electron populations 1.21704 0.89215 1.03948 1.03930 1.21661 0.99876 0.93773 0.97364 1.19644 0.80098 0.85930 0.82126 1.90718 1.37876 1.76481 1.35328 1.45785 1.54071 1.12764 1.24309 1.21509 0.99940 0.81519 0.98551 1.21321 0.99983 0.83111 0.97078 1.45799 1.56034 1.12029 1.25376 1.20331 0.79730 0.86839 0.81120 1.90716 1.36872 1.76519 1.34701 1.23528 1.04317 0.94712 1.07804 1.85415 1.68329 1.09288 1.20333 1.22911 1.37603 0.97535 1.10291 0.90824 1.25003 0.95129 0.99061 0.94458 1.70026 1.37121 1.33701 1.09415 0.86104 0.78909 0.82082 0.78326 1.19605 1.20573 1.20561 1.22757 0.96710 0.99352 0.96730 1.22171 0.98851 1.01934 0.79719 1.46158 1.36775 1.44174 1.11134 1.20319 0.79761 0.79772 0.88779 1.90805 1.61073 1.66069 1.21063 0.90750 0.90588 0.90741 0.75350 0.90295 0.90528 0.90811 0.90775 0.76521 0.89053 0.89076 0.92221 0.88885 0.87108 0.89610 0.90343 0.74595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 8.34 37.16 0.31 -0.40 16 2 C -0.12 -0.83 0.74 -155.59 -0.12 -0.95 16 3 C 0.54 5.00 6.55 -10.99 -0.07 4.93 16 4 O -0.53 -6.15 15.47 5.55 0.09 -6.06 16 5 N -0.72 -6.36 5.42 -60.29 -0.33 -6.69 16 6 C 0.11 0.98 5.79 -4.04 -0.02 0.96 16 7 C 0.11 1.22 5.79 -4.04 -0.02 1.19 16 8 N -0.74 -9.46 5.56 -60.29 -0.33 -9.79 16 9 C 0.53 9.81 7.85 -10.99 -0.09 9.72 16 10 O -0.51 -11.60 15.86 5.56 0.09 -11.51 16 11 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 12 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 13 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 14 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 17 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.12 -0.53 6.06 -25.01 -0.15 -0.68 16 22 C 0.10 0.38 7.78 -3.12 -0.02 0.36 16 23 N -0.73 -4.22 6.24 -59.20 -0.37 -4.59 16 24 C 0.53 4.53 7.07 -10.86 -0.08 4.45 16 25 O -0.52 -6.13 17.69 5.55 0.10 -6.03 16 26 H 0.07 0.33 8.13 -51.93 -0.42 -0.10 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.45 7.77 -51.93 -0.40 0.05 16 29 H 0.41 3.45 7.86 -40.82 -0.32 3.13 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 36 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.09 0.23 7.91 -51.93 -0.41 -0.18 16 39 H 0.11 0.59 6.93 -51.93 -0.36 0.23 16 40 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.41 1.82 8.96 -40.82 -0.37 1.45 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -38.07 373.43 -7.45 -45.52 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.98 Total: 2.63 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 0.16 Total: 3.79 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.30 Total: -46.54 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.27 Total: -23.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.07 -7.45 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.138 kcal (2) G-P(sol) polarization free energy of solvation -38.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.69 seconds