Wall clock time and date at job start Tue Mar 31 2020 06:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 110.43763 * 2 1 4 4 O 1.21283 * 120.00363 * 239.29881 * 3 2 1 5 5 N 1.34774 * 119.99993 * 59.29997 * 3 2 1 6 6 C 1.46504 * 120.00240 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.47049 * 179.97438 * 6 5 3 8 8 N 1.46499 * 109.46708 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99893 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99649 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99774 * 179.72962 * 9 8 7 12 12 S 1.81008 * 109.46759 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99946 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99996 * 359.97438 * 13 12 11 15 15 C 1.38798 * 120.00252 * 179.97438 * 13 12 11 16 16 N 1.31626 * 120.00327 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99735 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47351 * 90.00094 * 17 15 13 19 19 H 1.48496 * 109.47299 * 210.00069 * 17 15 13 20 20 H 1.48507 * 109.47281 * 330.00181 * 17 15 13 21 21 C 1.54635 * 110.48469 * 237.45702 * 2 1 3 22 22 C 1.54828 * 101.60241 * 216.43118 * 21 2 1 23 23 N 1.46762 * 105.49718 * 25.43672 * 22 21 2 24 24 C 1.34417 * 111.29874 * 342.96125 * 23 22 21 25 25 O 1.21285 * 124.94145 * 180.38017 * 24 23 22 26 26 H 1.09000 * 109.47131 * 60.69990 * 1 2 3 27 27 H 1.09006 * 109.47805 * 180.69830 * 1 2 3 28 28 H 1.08999 * 109.47360 * 300.70062 * 1 2 3 29 29 H 0.97005 * 119.99841 * 0.02562 * 5 3 2 30 30 H 1.09000 * 109.46642 * 59.99928 * 6 5 3 31 31 H 1.08994 * 109.47228 * 300.00265 * 6 5 3 32 32 H 1.08998 * 109.46692 * 60.00504 * 7 6 5 33 33 H 1.08994 * 109.47584 * 300.00368 * 7 6 5 34 34 H 0.97005 * 120.00261 * 0.02562 * 8 7 6 35 35 H 1.09001 * 109.46809 * 299.99238 * 11 9 8 36 36 H 1.08993 * 109.47525 * 59.99679 * 11 9 8 37 37 H 0.97000 * 120.00223 * 180.02562 * 16 15 13 38 38 H 1.08990 * 110.96839 * 334.51271 * 21 2 1 39 39 H 1.08995 * 110.96554 * 98.27754 * 21 2 1 40 40 H 1.08998 * 110.25393 * 266.41656 * 22 21 2 41 41 H 1.09004 * 110.21768 * 144.43029 * 22 21 2 42 42 H 0.97003 * 124.35127 * 162.93904 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4121 0.0000 4 8 2.7704 1.7931 -0.9031 5 7 1.7331 2.2516 1.0036 6 6 2.2451 3.6243 1.0039 7 6 1.7324 4.3595 2.2439 8 7 2.2439 5.7323 2.2439 9 6 1.9207 6.5719 3.2475 10 8 1.2068 6.1907 4.1508 11 6 2.4519 7.9822 3.2506 12 16 1.8453 8.8520 4.7175 13 6 2.5977 10.4264 4.4725 14 1 3.2172 10.5997 3.6050 15 6 2.3941 11.4439 5.3944 16 7 2.9557 12.6201 5.2111 17 14 1.3231 11.1439 6.8951 18 1 2.1638 10.6393 8.0104 19 1 0.6730 12.4156 7.3015 20 1 0.2810 10.1382 6.5666 21 6 2.0711 -0.7792 -1.2211 22 6 3.3232 -1.4657 -0.6225 23 7 3.0581 -1.5787 0.8165 24 6 2.0594 -0.7624 1.1946 25 8 1.6429 -0.6533 2.3285 26 1 -0.3633 0.5029 -0.8962 27 1 -0.3635 -1.0276 0.0125 28 1 -0.3634 0.5247 0.8836 29 1 1.1621 1.9468 1.7261 30 1 1.9011 4.1405 0.1077 31 1 3.3348 3.6056 1.0168 32 1 2.0761 3.8433 3.1403 33 1 0.6427 4.3782 2.2307 34 1 2.8152 6.0370 1.5216 35 1 3.5415 7.9599 3.2665 36 1 2.1121 8.5004 2.3540 37 1 2.8137 13.3311 5.8555 38 1 1.3470 -1.5179 -1.5646 39 1 2.3448 -0.0991 -2.0277 40 1 4.2083 -0.8537 -0.7962 41 1 3.4559 -2.4551 -1.0604 42 1 3.5413 -2.1671 1.4175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:34 Heat of formation + Delta-G solvation = -112.210494 kcal Electronic energy + Delta-G solvation = -24858.786734 eV Core-core repulsion = 20964.845575 eV Total energy + Delta-G solvation = -3893.941159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75079 -39.58375 -39.15123 -36.99018 -36.00250 -34.28261 -33.58984 -32.44396 -30.47924 -29.34936 -28.09936 -26.06517 -25.61644 -23.75377 -22.51522 -22.09320 -20.62217 -19.93463 -18.23180 -17.88183 -17.80998 -16.74787 -16.34194 -16.24854 -15.73303 -15.68133 -15.45492 -15.04526 -14.95228 -14.57593 -14.25571 -14.20287 -14.00466 -13.74944 -13.33550 -13.23366 -13.00512 -12.80316 -12.79190 -12.50549 -12.16374 -11.96499 -11.80961 -11.72338 -11.27368 -11.01097 -10.65192 -10.58342 -10.24142 -9.86784 -9.71126 -9.60989 -9.58954 -9.11026 -8.99992 -8.51455 -6.92989 -6.29291 -4.01379 1.74213 2.09870 2.43595 2.75448 2.87549 2.91060 3.32470 3.37546 3.50395 3.57033 3.66356 3.75963 4.05445 4.24759 4.32852 4.39550 4.42466 4.68879 4.72669 4.74451 4.93011 5.04323 5.08327 5.09727 5.10643 5.25690 5.28380 5.41188 5.49973 5.55423 5.63700 5.74893 5.88473 5.99397 6.12248 6.36410 6.38821 6.92844 7.50006 7.59091 7.64528 7.93680 8.40716 8.41545 9.16761 10.79857 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.001834 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.576885 B =15262.143222 C =15600.885411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.538 3.462 4 O -0.527 6.527 5 N -0.717 5.717 6 C 0.109 3.891 7 C 0.110 3.890 8 N -0.734 5.734 9 C 0.533 3.467 10 O -0.517 6.517 11 C -0.124 4.124 12 S -0.141 6.141 13 C -0.522 4.522 14 H 0.089 0.911 15 C 0.095 3.905 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C -0.117 4.117 22 C 0.098 3.902 23 N -0.726 5.726 24 C 0.531 3.469 25 O -0.516 6.516 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.410 0.590 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.402 0.598 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.271 0.729 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 -31.107 -16.411 35.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C 0.322 3.678 4 O -0.403 6.403 5 N -0.370 5.370 6 C -0.015 4.015 7 C -0.015 4.015 8 N -0.390 5.390 9 C 0.319 3.681 10 O -0.391 6.391 11 C -0.274 4.274 12 S 0.085 5.915 13 C -0.669 4.669 14 H 0.107 0.893 15 C -0.113 4.113 16 N -0.516 5.516 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.155 4.155 22 C -0.027 4.027 23 N -0.382 5.382 24 C 0.314 3.686 25 O -0.391 6.391 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.246 0.754 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.237 0.763 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.129 -31.123 -14.951 34.593 hybrid contribution 0.835 0.305 -0.158 0.903 sum -1.294 -30.818 -15.109 34.347 Atomic orbital electron populations 1.21708 0.89254 1.03976 1.03873 1.21641 0.99852 0.93793 0.97406 1.19657 0.80336 0.85925 0.81904 1.90721 1.36796 1.76966 1.35828 1.45778 1.52610 1.12428 1.26150 1.21507 0.99896 0.81472 0.98675 1.21328 0.99847 0.82865 0.97425 1.45753 1.54276 1.11734 1.27246 1.20303 0.80048 0.86781 0.81004 1.90714 1.36109 1.76991 1.35241 1.23274 1.04579 0.94148 1.05442 1.84804 1.67188 1.11479 1.28039 1.22313 1.35678 0.95163 1.13786 0.89338 1.24716 0.94926 0.93988 0.97712 1.69935 1.42559 1.02668 1.36464 0.86731 0.82386 0.79373 0.83331 1.19203 1.19932 1.15924 1.22789 0.96696 0.99376 0.96645 1.22232 0.98850 1.01915 0.79685 1.46155 1.36943 1.43917 1.11203 1.20304 0.79743 0.79777 0.88747 1.90804 1.60982 1.66145 1.21136 0.90561 0.90753 0.90803 0.75392 0.90238 0.90476 0.90759 0.90735 0.76335 0.88332 0.88290 0.91929 0.88912 0.87083 0.90293 0.89591 0.74580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 8.31 37.15 0.31 -0.37 16 2 C -0.12 -0.80 0.74 -155.67 -0.12 -0.91 16 3 C 0.54 4.83 6.55 -10.99 -0.07 4.76 16 4 O -0.53 -6.00 15.46 5.56 0.09 -5.91 16 5 N -0.72 -6.05 5.42 -60.29 -0.33 -6.38 16 6 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16 7 C 0.11 1.14 5.79 -4.04 -0.02 1.12 16 8 N -0.73 -8.85 5.56 -60.30 -0.33 -9.18 16 9 C 0.53 9.23 7.85 -10.98 -0.09 9.14 16 10 O -0.52 -10.98 15.86 5.56 0.09 -10.89 16 11 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 12 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 13 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 14 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 15 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 16 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 17 Si 0.86 21.80 27.74 -169.99 -4.71 17.09 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 21 C -0.12 -0.51 6.06 -24.91 -0.15 -0.66 16 22 C 0.10 0.36 7.79 -2.94 -0.02 0.34 16 23 N -0.73 -4.08 6.24 -59.01 -0.37 -4.45 16 24 C 0.53 4.41 7.13 -10.86 -0.08 4.33 16 25 O -0.52 -6.01 17.83 5.55 0.10 -5.91 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.42 7.59 -51.93 -0.39 0.03 16 29 H 0.41 3.23 7.88 -40.82 -0.32 2.91 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.40 3.67 8.47 -40.82 -0.35 3.33 16 35 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 36 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.09 0.22 7.91 -51.93 -0.41 -0.20 16 39 H 0.11 0.57 6.94 -51.93 -0.36 0.21 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.41 1.74 8.96 -40.82 -0.37 1.37 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -37.71 370.79 -6.93 -44.64 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.00 Total: 2.20 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 0.17 Total: 4.53 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.25 Total: -45.77 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.27 Total: -22.72 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.71 -6.93 -44.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.571 kcal (2) G-P(sol) polarization free energy of solvation -37.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds