Wall clock time and date at job start Tue Mar 31 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48504 * 109.46990 * 269.99644 * 3 2 1 5 5 H 1.48500 * 109.47142 * 29.99623 * 3 2 1 6 6 H 1.48499 * 109.47122 * 150.00126 * 3 2 1 7 7 C 1.38793 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00200 * 0.02562 * 7 2 1 10 10 C 1.81003 * 100.00301 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47158 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00098 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99774 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00068 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47101 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46871 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47111 * 179.97438 * 16 15 14 18 18 C 1.34778 * 120.00029 * 179.97438 * 17 16 15 19 19 O 1.21279 * 119.99831 * 354.99085 * 18 17 16 20 20 C 1.50698 * 119.99861 * 174.70322 * 18 17 16 21 21 C 1.50696 * 115.55209 * 279.32071 * 20 18 17 22 22 N 1.34781 * 119.99999 * 294.04092 * 21 20 18 23 23 O 1.21281 * 120.00149 * 114.04146 * 21 20 18 24 24 C 1.52998 * 117.49621 * 133.61088 * 20 18 17 25 25 C 1.52997 * 60.00149 * 252.51410 * 24 20 18 26 26 H 0.97003 * 119.99816 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46616 * 59.99985 * 10 9 7 28 28 H 1.08995 * 109.46652 * 299.99989 * 10 9 7 29 29 H 0.97003 * 120.00067 * 0.02562 * 13 11 10 30 30 H 1.08997 * 109.47106 * 59.99428 * 14 13 11 31 31 H 1.09007 * 109.46534 * 300.00081 * 14 13 11 32 32 H 1.09002 * 109.47222 * 60.00223 * 15 14 13 33 33 H 1.08993 * 109.47305 * 299.99563 * 15 14 13 34 34 H 1.09003 * 109.47361 * 60.00100 * 16 15 14 35 35 H 1.09002 * 109.47714 * 300.00014 * 16 15 14 36 36 H 0.96998 * 120.00083 * 0.02562 * 17 16 15 37 37 H 0.96993 * 119.99881 * 354.98569 * 22 21 20 38 38 H 0.96998 * 119.99613 * 174.98869 * 22 21 20 39 39 H 1.08996 * 117.50104 * 0.02562 * 24 20 18 40 40 H 1.08999 * 117.50164 * 145.02191 * 24 20 18 41 41 H 1.09001 * 117.49661 * 252.51335 * 25 24 20 42 42 H 1.08999 * 117.49881 * 107.49119 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7912 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0037 14 6 2.3305 -7.7151 0.0040 15 6 3.5025 -8.6985 0.0054 16 6 2.9660 -10.1313 0.0064 17 7 4.0883 -11.0730 0.0072 18 6 3.8542 -12.4003 0.0086 19 8 2.7185 -12.8157 0.1009 20 6 5.0032 -13.3681 -0.1111 21 6 5.5176 -13.5967 -1.5090 22 7 4.7338 -14.1984 -2.4255 23 8 6.6370 -13.2391 -1.8092 24 6 5.0315 -14.5539 0.8553 25 6 6.0213 -13.4005 1.0305 26 1 -0.4850 0.8401 -0.0004 27 1 3.1238 -3.7309 0.8925 28 1 3.1251 -3.7317 -0.8874 29 1 3.8010 -6.1835 0.0040 30 1 1.7222 -7.8755 -0.8861 31 1 1.7215 -7.8748 0.8938 32 1 4.1104 -8.5380 0.8959 33 1 4.1118 -8.5389 -0.8841 34 1 2.3579 -10.2922 -0.8838 35 1 2.3569 -10.2907 0.8961 36 1 4.9998 -10.7413 0.0074 37 1 3.8674 -14.5495 -2.1672 38 1 5.0363 -14.2804 -3.3435 39 1 4.2189 -14.6343 1.5773 40 1 5.4221 -15.4998 0.4801 41 1 7.0632 -13.5875 0.7705 42 1 5.8601 -12.7218 1.8681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686894524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:39 Heat of formation + Delta-G solvation = -97.101946 kcal Electronic energy + Delta-G solvation = -24009.497151 eV Core-core repulsion = 20116.211148 eV Total energy + Delta-G solvation = -3893.286004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19237 -39.48740 -39.17038 -36.83576 -36.24732 -34.57564 -34.16691 -32.43966 -31.72101 -29.22828 -26.71285 -25.53419 -24.94925 -23.12112 -22.46172 -22.10625 -20.41003 -20.10673 -18.66589 -17.83124 -17.62099 -16.80126 -16.64029 -16.33436 -16.22532 -15.79744 -15.54786 -15.14275 -14.95736 -14.81253 -14.40164 -14.25831 -13.91880 -13.65120 -13.16965 -13.09815 -12.72038 -12.39869 -12.29066 -12.01008 -11.99391 -11.80427 -11.38401 -11.32391 -11.07231 -11.03555 -10.77925 -10.74322 -10.29595 -10.27224 -9.83028 -9.62139 -9.45274 -9.08346 -8.94862 -8.25156 -6.51472 -6.22707 -3.93532 1.69492 2.05729 2.40063 2.70946 3.01011 3.06325 3.14825 3.21627 3.27366 3.31383 3.67863 3.96513 4.05972 4.14078 4.19327 4.25799 4.53555 4.53811 4.62819 4.89877 4.99702 5.12448 5.13505 5.16227 5.17346 5.23248 5.41194 5.44187 5.59697 5.72346 5.82229 5.87443 5.87688 6.11587 6.14933 6.54240 6.67937 6.88695 7.57995 7.58400 7.61276 7.64937 8.34064 8.57079 9.22593 10.84701 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031374 B = 0.001544 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.246267 B =18133.567094 C =18437.218634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.740 5.740 14 C 0.125 3.875 15 C -0.144 4.144 16 C 0.121 3.879 17 N -0.720 5.720 18 C 0.557 3.443 19 O -0.524 6.524 20 C -0.202 4.202 21 C 0.565 3.435 22 N -0.844 5.844 23 O -0.530 6.530 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.406 0.594 37 H 0.408 0.592 38 H 0.406 0.594 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.652 -30.383 -0.032 33.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C 0.000 4.000 15 C -0.182 4.182 16 C -0.003 4.003 17 N -0.371 5.371 18 C 0.341 3.659 19 O -0.400 6.400 20 C -0.209 4.209 21 C 0.348 3.652 22 N -0.408 5.408 23 O -0.406 6.406 24 C -0.165 4.165 25 C -0.170 4.170 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.241 0.759 37 H 0.237 0.763 38 H 0.238 0.762 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.360 -30.595 -0.004 32.636 hybrid contribution 2.527 1.346 -0.373 2.887 sum 13.887 -29.249 -0.378 32.381 Atomic orbital electron populations 1.70020 1.05952 1.27471 1.46812 1.24995 0.95033 0.99039 0.94521 0.86163 0.79398 0.81551 0.78351 1.20269 1.20736 1.19705 1.22866 0.94913 0.91648 1.59012 0.90912 1.85411 1.04902 0.96344 1.96723 1.23531 1.06609 0.95329 1.04952 1.20322 0.86513 0.86293 0.75113 1.90710 1.15374 1.85596 1.47334 1.45964 1.09983 1.05359 1.78202 1.21090 0.95328 0.80620 1.02961 1.21981 0.99082 0.93348 1.03772 1.21323 0.88599 0.86927 1.03439 1.45945 1.10840 1.05507 1.74855 1.18991 0.88239 0.82288 0.76396 1.90756 1.22492 1.78134 1.48573 1.21457 1.02112 1.04697 0.92622 1.18957 0.84626 0.76808 0.84831 1.43775 1.22708 1.61391 1.12894 1.90787 1.19076 1.50741 1.79950 1.23098 1.02129 0.92465 0.98825 1.23148 0.96595 1.01115 0.96113 0.92167 0.89188 0.89187 0.76784 0.91233 0.91191 0.90302 0.90352 0.90714 0.90457 0.75945 0.76282 0.76195 0.86768 0.87210 0.86602 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.67 7.85 -10.98 -0.09 9.58 16 12 O -0.52 -11.60 15.86 5.56 0.09 -11.51 16 13 N -0.74 -9.13 5.56 -60.29 -0.33 -9.47 16 14 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 15 C -0.14 -0.91 5.44 -26.73 -0.15 -1.05 16 16 C 0.12 0.85 5.68 -4.04 -0.02 0.83 16 17 N -0.72 -4.72 5.55 -60.29 -0.33 -5.06 16 18 C 0.56 4.52 6.97 -10.99 -0.08 4.44 16 19 O -0.52 -5.89 17.02 5.56 0.09 -5.79 16 20 C -0.20 -1.28 2.25 -156.82 -0.35 -1.63 16 21 C 0.57 4.25 7.34 -10.99 -0.08 4.17 16 22 N -0.84 -4.02 8.87 31.22 0.28 -3.74 16 23 O -0.53 -5.76 17.55 5.56 0.10 -5.66 16 24 C -0.13 -0.57 9.87 -26.73 -0.26 -0.84 16 25 C -0.13 -0.61 9.76 -26.73 -0.26 -0.87 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.40 3.65 8.47 -40.82 -0.35 3.31 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.41 1.98 8.48 -40.82 -0.35 1.63 16 37 H 0.41 1.41 8.83 -40.82 -0.36 1.05 16 38 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 39 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.12 0.55 8.00 -51.93 -0.42 0.13 16 42 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 385.44 15.07 5.81 5.81 Total: -1.00 -38.73 385.44 -7.72 -46.45 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.03 Total: 1.74 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -0.89 Total: 0.15 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.34 Total: -43.63 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.28 Total: -22.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.73 -7.72 -46.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686894524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.648 kcal (2) G-P(sol) polarization free energy of solvation -38.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds