Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00386 * 2 1 4 4 H 1.48499 * 109.47370 * 270.00716 * 3 2 1 5 5 H 1.48506 * 109.46715 * 30.00355 * 3 2 1 6 6 H 1.48503 * 109.47340 * 150.00033 * 3 2 1 7 7 C 1.38805 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99513 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99919 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47353 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99661 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00042 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00082 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47229 * 180.02562 * 14 13 11 16 16 C 1.53009 * 109.46874 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46897 * 179.97438 * 16 15 14 18 18 C 1.34774 * 119.99881 * 179.97438 * 17 16 15 19 19 O 1.21275 * 119.99937 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99881 * 180.02562 * 18 17 16 21 21 H 1.09008 * 110.21685 * 320.47586 * 20 18 17 22 22 C 1.54480 * 110.32162 * 82.45821 * 20 18 17 23 23 C 1.54618 * 101.76574 * 93.62178 * 22 20 18 24 24 C 1.51284 * 104.19819 * 24.79772 * 23 22 20 25 25 O 1.21284 * 124.94089 * 163.77039 * 24 23 22 26 26 N 1.34413 * 110.11346 * 343.74895 * 24 23 22 27 27 H 0.96998 * 119.99626 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47193 * 59.99753 * 10 9 7 29 29 H 1.09003 * 109.47048 * 300.00217 * 10 9 7 30 30 H 0.97003 * 120.00471 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47249 * 59.99953 * 14 13 11 32 32 H 1.09002 * 109.46585 * 300.00281 * 14 13 11 33 33 H 1.09000 * 109.47253 * 59.99699 * 15 14 13 34 34 H 1.08997 * 109.46951 * 299.99394 * 15 14 13 35 35 H 1.09002 * 109.46452 * 60.00075 * 16 15 14 36 36 H 1.08997 * 109.47083 * 299.99615 * 16 15 14 37 37 H 0.97007 * 120.00067 * 0.02562 * 17 16 15 38 38 H 1.09003 * 110.96745 * 211.74510 * 22 20 18 39 39 H 1.09003 * 110.96503 * 335.49722 * 22 20 18 40 40 H 1.09008 * 110.48943 * 143.47618 * 23 22 20 41 41 H 1.08998 * 110.49021 * 266.11724 * 23 22 20 42 42 H 0.97003 * 124.34694 * 179.85661 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8439 -6.3432 -0.0003 14 6 2.3301 -7.7152 -0.0003 15 6 3.5021 -8.6986 -0.0001 16 6 2.9655 -10.1315 0.0006 17 7 4.0877 -11.0732 0.0001 18 6 3.8536 -12.4005 0.0011 19 8 2.7140 -12.8152 0.0019 20 6 5.0080 -13.3692 0.0011 21 1 5.8035 -13.0073 -0.6505 22 6 5.5419 -13.5674 1.4371 23 6 4.7542 -14.8160 1.8968 24 6 4.4015 -15.5271 0.6089 25 8 4.0313 -16.6794 0.5306 26 7 4.5577 -14.6960 -0.4358 27 1 -0.4849 0.8401 0.0004 28 1 3.1243 -3.7315 0.8894 29 1 3.1243 -3.7314 -0.8905 30 1 3.8007 -6.1836 -0.0006 31 1 1.7212 -7.8752 -0.8900 32 1 1.7218 -7.8752 0.8899 33 1 4.1107 -8.5385 0.8898 34 1 4.1107 -8.5387 -0.8901 35 1 2.3567 -10.2918 -0.8893 36 1 2.3571 -10.2912 0.8908 37 1 4.9993 -10.7415 -0.0002 38 1 6.6143 -13.7630 1.4310 39 1 5.3077 -12.7061 2.0627 40 1 5.3789 -15.4514 2.5247 41 1 3.8502 -14.5218 2.4300 42 1 4.3903 -14.9404 -1.3595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686894634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -116.838792 kcal Electronic energy + Delta-G solvation = -23884.305559 eV Core-core repulsion = 19990.163702 eV Total energy + Delta-G solvation = -3894.141857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 19.27 seconds Orbital eigenvalues (eV) -41.41578 -39.57818 -39.20158 -36.87366 -36.26832 -34.63628 -32.46105 -32.08711 -31.74759 -29.54284 -28.52510 -25.69849 -25.29720 -23.35739 -22.22960 -21.23756 -20.85950 -20.42832 -18.27004 -18.07484 -17.81667 -16.78434 -16.46370 -16.30221 -16.03042 -15.75025 -15.35118 -15.14478 -14.83295 -14.66437 -14.26064 -14.14907 -13.95280 -13.86427 -13.38036 -13.19699 -13.13276 -12.73750 -12.39901 -12.22217 -12.05491 -12.01378 -11.94231 -11.41902 -11.09173 -11.05705 -10.83031 -10.78901 -10.39004 -9.85292 -9.66321 -9.63912 -9.47424 -9.10479 -8.98501 -8.27380 -6.53773 -6.24736 -3.95737 1.92318 2.04184 2.40669 2.84876 3.01603 3.03206 3.19811 3.25520 3.29155 3.64575 3.66863 3.74540 3.96375 4.15009 4.17255 4.43139 4.48977 4.49387 4.57585 4.68583 4.99291 5.09218 5.10503 5.11076 5.12951 5.20202 5.22291 5.41553 5.56746 5.68156 5.78522 5.83596 5.84223 6.08315 6.13945 6.42968 6.50564 6.85065 7.56151 7.58340 7.61324 7.72338 8.31864 8.53980 9.20533 10.82701 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.050309 B = 0.001413 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.428692 B =19805.226575 C =20098.986348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.740 5.740 14 C 0.124 3.876 15 C -0.142 4.142 16 C 0.121 3.879 17 N -0.726 5.726 18 C 0.496 3.504 19 O -0.522 6.522 20 C 0.114 3.886 21 H 0.115 0.885 22 C -0.120 4.120 23 C -0.158 4.158 24 C 0.528 3.472 25 O -0.528 6.528 26 N -0.711 5.711 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.403 0.597 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.225 -25.436 1.380 31.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.395 5.395 14 C -0.001 4.001 15 C -0.180 4.180 16 C -0.003 4.003 17 N -0.379 5.379 18 C 0.279 3.721 19 O -0.396 6.396 20 C 0.004 3.996 21 H 0.132 0.868 22 C -0.158 4.158 23 C -0.198 4.198 24 C 0.314 3.686 25 O -0.404 6.404 26 N -0.366 5.366 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.237 0.763 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 15.005 -26.577 1.467 30.555 hybrid contribution 2.762 1.651 -0.515 3.259 sum 17.767 -24.926 0.952 30.625 Atomic orbital electron populations 1.70016 1.05966 1.27499 1.46739 1.24995 0.95025 0.99041 0.94496 0.86164 0.79391 0.81554 0.78354 1.20264 1.20729 1.19709 1.22864 0.94897 0.91645 1.59103 0.90917 1.85431 1.04870 0.96352 1.96724 1.23529 1.06620 0.95328 1.04924 1.20327 0.86525 0.86304 0.75131 1.90716 1.15385 1.85586 1.47252 1.45957 1.09940 1.05359 1.78266 1.21099 0.95396 0.80626 1.02991 1.21973 0.99034 0.93418 1.03603 1.21288 0.88762 0.86869 1.03414 1.45970 1.10512 1.05682 1.75722 1.21036 0.91121 0.83122 0.76787 1.90786 1.23003 1.78045 1.47765 1.21562 0.94843 0.83921 0.99281 0.86764 1.22601 1.01259 0.99295 0.92651 1.22376 1.03042 0.97478 0.96944 1.20820 0.75536 0.85467 0.86730 1.90781 1.46563 1.16733 1.86329 1.45895 1.69647 1.10867 1.10222 0.92146 0.89201 0.89203 0.76823 0.91243 0.91225 0.90369 0.90407 0.90760 0.90702 0.76309 0.88298 0.88506 0.87377 0.87318 0.74587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 11 C 0.53 9.35 7.85 -10.99 -0.09 9.26 16 12 O -0.52 -11.37 15.86 5.56 0.09 -11.29 16 13 N -0.74 -8.51 5.56 -60.29 -0.33 -8.84 16 14 C 0.12 1.17 5.67 -4.04 -0.02 1.14 16 15 C -0.14 -0.68 5.44 -26.73 -0.15 -0.83 16 16 C 0.12 0.69 5.67 -4.04 -0.02 0.67 16 17 N -0.73 -2.77 5.56 -60.29 -0.33 -3.11 16 18 C 0.50 3.07 7.00 -10.99 -0.08 2.99 16 19 O -0.52 -5.96 16.58 5.56 0.09 -5.87 16 20 C 0.11 0.36 3.92 -68.16 -0.27 0.09 16 21 H 0.11 -0.02 8.14 -51.92 -0.42 -0.44 16 22 C -0.12 -0.20 6.69 -25.10 -0.17 -0.36 16 23 C -0.16 -0.74 6.85 -26.75 -0.18 -0.93 16 24 C 0.53 4.55 8.43 -10.86 -0.09 4.46 16 25 O -0.53 -7.01 18.03 5.55 0.10 -6.91 16 26 N -0.71 -4.30 5.47 -53.88 -0.29 -4.59 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 29 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 30 H 0.40 3.23 8.47 -40.82 -0.35 2.89 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 0.20 8.47 -40.82 -0.35 -0.15 16 38 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 39 H 0.10 0.07 7.89 -51.93 -0.41 -0.34 16 40 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.41 2.24 8.96 -40.82 -0.37 1.88 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -41.03 378.02 -8.22 -49.25 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.08 Total: -2.43 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.64 Total: 1.03 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.23 Total: -41.66 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.28 Total: -24.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -41.03 -8.22 -49.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686894634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.589 kcal (2) G-P(sol) polarization free energy of solvation -41.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.28 seconds