Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48503 * 109.46964 * 269.99897 * 3 2 1 5 5 H 1.48496 * 109.47163 * 29.99782 * 3 2 1 6 6 H 1.48506 * 109.47253 * 150.00170 * 3 2 1 7 7 C 1.38805 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99511 * 359.97438 * 7 2 1 9 9 S 1.76191 * 120.00294 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00112 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47393 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99879 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99981 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99797 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.47276 * 325.00066 * 14 13 11 16 16 C 1.53002 * 109.46958 * 84.99979 * 14 13 11 17 17 C 1.52997 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 14 19 19 H 1.08998 * 109.46505 * 299.99708 * 18 17 16 20 20 N 1.46500 * 109.47249 * 180.02562 * 18 17 16 21 21 C 1.34770 * 120.00256 * 84.99846 * 20 18 17 22 22 O 1.21356 * 120.00254 * 359.97438 * 21 20 18 23 23 C 1.49449 * 120.00167 * 180.02562 * 21 20 18 24 24 N 1.34779 * 120.00353 * 179.97438 * 23 21 20 25 25 O 1.21355 * 120.00035 * 359.97438 * 23 21 20 26 26 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 27 27 C 1.52996 * 109.46998 * 204.99519 * 14 13 11 28 28 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47197 * 59.99783 * 10 9 7 30 30 H 1.09005 * 109.47180 * 300.00118 * 10 9 7 31 31 H 0.97001 * 120.00457 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47097 * 299.99818 * 16 14 13 33 33 H 1.09001 * 109.47142 * 59.99782 * 16 14 13 34 34 H 1.09001 * 109.47375 * 59.99908 * 17 16 14 35 35 H 1.09000 * 109.47140 * 179.97438 * 17 16 14 36 36 H 0.97005 * 119.99374 * 264.99912 * 20 18 17 37 37 H 0.97005 * 119.99613 * 0.02562 * 24 23 21 38 38 H 0.96997 * 120.00252 * 179.97438 * 24 23 21 39 39 H 1.09002 * 109.47153 * 180.02562 * 26 18 17 40 40 H 1.09001 * 109.46832 * 60.00321 * 26 18 17 41 41 H 1.09004 * 109.47368 * 60.00227 * 27 14 13 42 42 H 1.09001 * 109.47372 * 300.00383 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2324 0.0010 12 8 6.3441 -2.2962 0.0015 13 7 6.0458 -4.4946 0.0005 14 6 7.4909 -4.7356 0.0011 15 1 7.9880 -3.9647 -0.5876 16 6 8.0139 -4.6963 1.4384 17 6 9.5231 -4.9473 1.4389 18 6 9.8120 -6.3203 0.8284 19 1 9.3152 -7.0914 1.4172 20 7 11.2571 -6.5610 0.8295 21 6 11.8553 -7.0663 1.9263 22 8 11.1970 -7.3215 2.9134 23 6 13.3296 -7.3112 1.9276 24 7 13.9280 -7.8161 3.0247 25 8 13.9880 -7.0556 0.9408 26 6 9.2889 -6.3596 -0.6088 27 6 7.7791 -6.1087 -0.6091 28 1 -0.4850 0.8401 -0.0004 29 1 3.6441 -3.4313 -0.8903 30 1 3.6434 -3.4317 0.8896 31 1 5.4292 -5.2434 -0.0002 32 1 7.8085 -3.7181 1.8731 33 1 7.5167 -5.4672 2.0272 34 1 10.0200 -4.1762 0.8503 35 1 9.8958 -4.9189 2.4628 36 1 11.7833 -6.3566 0.0406 37 1 13.4016 -8.0208 3.8134 38 1 14.8848 -7.9754 3.0253 39 1 9.4943 -7.3378 -1.0436 40 1 9.7858 -5.5884 -1.1975 41 1 7.4065 -6.1368 -1.6331 42 1 7.2819 -6.8796 -0.0203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688833482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -127.992175 kcal Electronic energy + Delta-G solvation = -24943.794405 eV Core-core repulsion = 21049.168900 eV Total energy + Delta-G solvation = -3894.625504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 6.96 seconds Orbital eigenvalues (eV) -41.15683 -39.95039 -38.98398 -37.94470 -35.42718 -34.16940 -33.10207 -32.44121 -31.19922 -30.10486 -28.11386 -25.64506 -25.34894 -23.22992 -22.42811 -20.90491 -20.48597 -20.30982 -19.07583 -17.87223 -17.74882 -16.64724 -16.60125 -16.39686 -16.22516 -15.98397 -15.21009 -14.98223 -14.72774 -14.61843 -14.27100 -14.07292 -13.95141 -13.47313 -13.26696 -12.96113 -12.79382 -12.60357 -12.34061 -12.16100 -11.93879 -11.64902 -11.52380 -11.26808 -11.01403 -10.83092 -10.81573 -10.58585 -10.44332 -10.17133 -9.85920 -9.63848 -9.50305 -9.02334 -8.96192 -8.50511 -6.92169 -6.29295 -4.01003 0.92352 1.98543 2.72654 2.75622 2.96198 3.26325 3.32833 3.38874 3.50221 3.65168 4.06589 4.21743 4.29993 4.32787 4.65907 4.68738 4.75920 4.84473 5.01436 5.06696 5.09265 5.09845 5.23610 5.36539 5.41797 5.57714 5.63367 5.72987 5.75973 5.82616 5.87888 5.94641 6.01043 6.03918 6.12958 6.37469 6.56715 6.80593 7.29342 7.51093 7.61130 7.93715 8.41227 8.48976 9.16920 10.79894 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.034807 B = 0.001899 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.234866 B =14738.618841 C =14987.745465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.734 5.734 14 C 0.145 3.855 15 H 0.090 0.910 16 C -0.127 4.127 17 C -0.126 4.126 18 C 0.141 3.859 19 H 0.095 0.905 20 N -0.694 5.694 21 C 0.506 3.494 22 O -0.517 6.517 23 C 0.513 3.487 24 N -0.822 5.822 25 O -0.522 6.522 26 C -0.123 4.123 27 C -0.122 4.122 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.924 -19.622 2.774 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.040 3.960 15 H 0.108 0.892 16 C -0.166 4.166 17 C -0.165 4.165 18 C 0.037 3.963 19 H 0.113 0.887 20 N -0.346 5.346 21 C 0.286 3.714 22 O -0.393 6.393 23 C 0.292 3.708 24 N -0.388 5.388 25 O -0.398 6.398 26 C -0.161 4.161 27 C -0.160 4.160 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.249 0.751 37 H 0.245 0.755 38 H 0.244 0.756 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 25.812 -17.906 2.758 31.535 hybrid contribution -0.709 -0.763 0.071 1.044 sum 25.103 -18.669 2.828 31.412 Atomic orbital electron populations 1.69938 1.05914 1.27759 1.48062 1.24716 0.94451 0.98964 0.93183 0.86734 0.81896 0.83285 0.79925 1.19214 1.19952 1.15931 1.22320 0.88300 0.97529 1.58787 0.89397 1.84783 1.09253 1.00106 1.97426 1.23288 0.94115 1.04356 1.05792 1.20282 0.90537 0.82390 0.75015 1.90696 1.58740 1.42195 1.47694 1.46024 1.07145 1.08028 1.77484 1.20946 0.81442 0.97225 0.96434 0.89240 1.21896 0.94389 1.03289 0.97063 1.21884 0.96744 0.96025 1.01880 1.21261 0.78662 0.98601 0.97737 0.88678 1.45890 1.09778 1.62750 1.16197 1.20049 0.88251 0.78974 0.84131 1.90796 1.65417 1.50324 1.32751 1.20178 0.88831 0.78038 0.83751 1.43542 1.13243 1.65446 1.16613 1.90833 1.65802 1.50010 1.33121 1.21760 0.96057 1.03142 0.95147 1.21748 0.95344 0.96719 1.02220 0.91946 0.88524 0.88480 0.76692 0.90482 0.91415 0.91116 0.91035 0.75091 0.75465 0.75624 0.90523 0.90563 0.90315 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.97 10.04 30.94 0.31 -14.65 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 11 C 0.53 9.03 7.81 -10.99 -0.09 8.94 16 12 O -0.52 -10.79 15.52 5.56 0.09 -10.70 16 13 N -0.73 -8.58 5.08 -53.81 -0.27 -8.85 16 14 C 0.14 1.44 2.45 -67.93 -0.17 1.27 16 15 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 16 C -0.13 -1.27 5.49 -26.73 -0.15 -1.42 16 17 C -0.13 -1.09 5.49 -26.73 -0.15 -1.24 16 18 C 0.14 0.99 2.45 -67.93 -0.17 0.83 16 19 H 0.10 0.75 7.58 -51.93 -0.39 0.36 16 20 N -0.69 -4.78 5.07 -54.24 -0.28 -5.06 16 21 C 0.51 4.16 7.85 -11.59 -0.09 4.07 16 22 O -0.52 -5.34 16.14 5.49 0.09 -5.25 16 23 C 0.51 3.84 8.16 -11.58 -0.09 3.74 16 24 N -0.82 -3.41 8.87 30.91 0.27 -3.13 16 25 O -0.52 -5.21 17.31 5.49 0.10 -5.11 16 26 C -0.12 -0.69 5.39 -26.71 -0.14 -0.83 16 27 C -0.12 -0.80 5.39 -26.71 -0.14 -0.94 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 31 H 0.40 3.54 8.60 -40.82 -0.35 3.19 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.41 2.38 8.08 -40.82 -0.33 2.05 16 37 H 0.41 1.24 8.30 -40.82 -0.34 0.90 16 38 H 0.41 0.93 8.93 -40.82 -0.36 0.56 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -36.60 368.23 -7.11 -43.72 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.98 Total: 2.75 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.75 Total: 0.34 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.50 Total: -42.75 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.27 Total: -21.07 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.60 -7.11 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688833482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.274 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.96 seconds