Wall clock time and date at job start Tue Mar 31 2020 07:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46587 * 2 1 4 4 C 1.52996 * 109.47188 * 119.99984 * 2 1 3 5 5 N 1.46497 * 109.47359 * 175.00215 * 4 2 1 6 6 C 1.34778 * 120.00309 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99491 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99778 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46742 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99907 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99736 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99832 * 180.27629 * 10 9 8 13 13 N 1.31634 * 120.00296 * 359.72198 * 12 10 9 14 14 Si 1.86801 * 119.99859 * 179.72079 * 12 10 9 15 15 H 1.48496 * 109.47031 * 59.99840 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47038 * 299.99817 * 14 12 10 18 18 N 1.46499 * 109.47020 * 240.00581 * 2 1 3 19 19 C 1.34774 * 120.00699 * 85.00086 * 18 2 1 20 20 O 1.21281 * 119.99510 * 359.97438 * 19 18 2 21 21 C 1.50697 * 120.00443 * 179.97438 * 19 18 2 22 22 H 1.08998 * 110.21316 * 319.29856 * 21 19 18 23 23 C 1.54480 * 110.24433 * 81.22341 * 21 19 18 24 24 C 1.54766 * 101.70067 * 144.36334 * 23 21 19 25 25 C 1.51281 * 104.23386 * 335.30503 * 24 23 21 26 26 O 1.21281 * 124.93961 * 196.16725 * 25 24 23 27 27 N 1.34416 * 110.11868 * 16.18910 * 25 24 23 28 28 H 1.08998 * 109.46792 * 299.99571 * 1 2 3 29 29 H 1.08999 * 109.46753 * 59.99742 * 1 2 3 30 30 H 1.09000 * 109.46587 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46959 * 55.00195 * 4 2 1 32 32 H 1.09006 * 109.47312 * 295.00256 * 4 2 1 33 33 H 0.97005 * 119.99622 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47396 * 59.99696 * 8 6 5 35 35 H 1.09001 * 109.47080 * 299.99119 * 8 6 5 36 36 H 0.96995 * 120.00136 * 180.02562 * 13 12 10 37 37 H 0.97002 * 119.99689 * 264.99917 * 18 2 1 38 38 H 1.08999 * 110.97255 * 262.53459 * 23 21 19 39 39 H 1.09001 * 110.97024 * 26.30534 * 23 21 19 40 40 H 1.09000 * 110.51929 * 216.58660 * 24 23 21 41 41 H 1.09000 * 110.52836 * 94.02621 * 24 23 21 42 42 H 0.96998 * 124.35340 * 180.38327 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1731 -1.4291 2.1907 7 8 3.5700 -1.8841 3.1394 8 6 5.6750 -1.5367 2.1306 9 16 6.2784 -2.3900 3.6084 10 6 8.0103 -2.3757 3.2843 11 1 8.3865 -1.9226 2.3790 12 6 8.8904 -2.9524 4.1895 13 7 8.4319 -3.5051 5.2926 14 14 10.7259 -2.9441 3.8421 15 1 11.2008 -1.5422 3.7232 16 1 11.4432 -3.6166 4.9550 17 1 10.9926 -3.6666 2.5724 18 7 2.0184 -0.6905 -1.1962 19 6 2.1472 -0.0182 -2.3572 20 8 1.8583 1.1585 -2.4117 21 6 2.6500 -0.7283 -3.5875 22 1 3.4659 -1.4022 -3.3263 23 6 1.5015 -1.5142 -4.2580 24 6 1.8455 -1.3539 -5.7584 25 6 2.6644 -0.0833 -5.8185 26 8 2.8969 0.5460 -6.8289 27 7 3.0972 0.2464 -4.5894 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6055 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1370 33 1 3.9824 -0.4627 0.4316 34 1 6.1093 -0.5379 2.0854 35 1 5.9638 -2.0990 1.2426 36 1 9.0470 -3.9077 5.9253 37 1 2.2491 -1.6317 -1.1527 38 1 1.5214 -2.5630 -3.9618 39 1 0.5354 -1.0641 -4.0295 40 1 0.9359 -1.2499 -6.3500 41 1 2.4324 -2.2030 -6.1089 42 1 3.6362 1.0278 -4.3903 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689440582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:46 Heat of formation + Delta-G solvation = -114.416252 kcal Electronic energy + Delta-G solvation = -25038.688690 eV Core-core repulsion = 21144.651881 eV Total energy + Delta-G solvation = -3894.036808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32116 -39.89151 -39.12597 -36.98404 -36.31467 -33.86390 -32.48026 -31.99112 -31.64365 -29.52878 -28.56146 -26.11843 -25.44016 -23.58578 -21.92695 -21.03130 -20.92865 -20.46846 -18.49235 -17.90871 -17.79271 -16.80138 -16.42701 -16.37040 -15.87325 -15.46197 -15.33611 -14.97240 -14.85072 -14.23248 -14.15510 -14.13037 -13.73240 -13.55947 -13.40084 -13.18867 -13.05562 -13.02350 -12.65416 -12.47037 -12.32355 -11.90789 -11.74915 -11.42557 -11.10144 -11.07944 -10.81623 -10.57789 -10.32672 -9.88766 -9.72010 -9.58159 -9.51863 -9.12866 -9.06150 -8.31382 -6.56677 -6.26799 -3.98191 1.97267 2.09356 2.42554 2.90033 2.95314 2.99915 3.19802 3.23795 3.26492 3.59772 3.73962 3.77404 4.04192 4.15404 4.26286 4.33241 4.43115 4.68693 4.77908 4.84318 5.04188 5.06141 5.08443 5.17127 5.21811 5.26179 5.29143 5.42430 5.54192 5.64846 5.78266 5.79076 5.94992 6.04700 6.22933 6.41957 6.53138 6.90677 7.52286 7.54576 7.61188 7.78873 8.29629 8.46621 9.18528 10.80507 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.002369 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.636672 B =11814.043395 C =13437.515464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.741 5.741 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 N -0.720 5.720 19 C 0.507 3.493 20 O -0.525 6.525 21 C 0.112 3.888 22 H 0.110 0.890 23 C -0.121 4.121 24 C -0.155 4.155 25 C 0.523 3.477 26 O -0.530 6.530 27 N -0.709 5.709 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.406 0.594 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.360 3.024 -18.146 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.115 0.885 4 C -0.012 4.012 5 N -0.396 5.396 6 C 0.318 3.682 7 O -0.388 6.388 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.374 5.374 19 C 0.291 3.709 20 O -0.400 6.400 21 C 0.002 3.998 22 H 0.127 0.873 23 C -0.159 4.159 24 C -0.195 4.195 25 C 0.309 3.691 26 O -0.405 6.405 27 N -0.366 5.366 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.241 0.759 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -17.490 3.264 -16.975 24.591 hybrid contribution 2.465 0.584 -1.357 2.874 sum -15.025 3.848 -18.332 24.013 Atomic orbital electron populations 1.22106 0.93813 1.02817 1.03219 1.21299 0.95106 0.97876 0.83051 0.88531 1.21617 0.81199 1.01389 0.96970 1.46002 1.06736 1.62169 1.24718 1.20333 0.89546 0.76702 0.81574 1.90716 1.69839 1.45903 1.32374 1.23533 0.93423 1.05754 1.07755 1.85403 1.04656 1.72971 1.20206 1.22816 0.91497 1.44372 1.09851 0.90979 1.24992 0.99619 0.94477 0.94447 1.70001 1.35593 1.35225 1.09428 0.86223 0.82706 0.78504 0.78066 1.19928 1.20780 1.19921 1.46104 1.67386 1.14520 1.09377 1.20697 0.78155 0.87557 0.84444 1.90771 1.48942 1.15673 1.84585 1.21622 0.98989 0.91100 0.88090 0.87274 1.22642 0.97627 1.01569 0.94077 1.22400 1.02146 0.97522 0.97477 1.20827 0.79188 0.86406 0.82679 1.90787 1.59205 1.57402 1.33155 1.45944 1.54847 1.28334 1.07455 0.90906 0.91635 0.91835 0.90755 0.89846 0.76801 0.89225 0.89252 0.92073 0.75905 0.87825 0.89304 0.87486 0.87120 0.74326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.49 37.16 0.35 -0.60 16 2 C 0.13 0.88 2.73 -67.93 -0.19 0.69 16 3 H 0.10 0.80 7.58 -51.93 -0.39 0.41 16 4 C 0.11 0.99 5.23 -4.05 -0.02 0.96 16 5 N -0.74 -8.06 5.39 -60.30 -0.32 -8.39 16 6 C 0.53 8.87 7.85 -10.99 -0.09 8.79 16 7 O -0.51 -10.72 15.86 5.56 0.09 -10.63 16 8 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 10 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 11 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 14 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 18 N -0.72 -3.76 4.52 -53.81 -0.24 -4.00 16 19 C 0.51 3.48 6.99 -10.99 -0.08 3.40 16 20 O -0.52 -5.81 16.22 5.56 0.09 -5.72 16 21 C 0.11 0.53 3.92 -68.16 -0.27 0.26 16 22 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 23 C -0.12 -0.36 6.69 -25.02 -0.17 -0.53 16 24 C -0.16 -0.70 6.86 -26.67 -0.18 -0.88 16 25 C 0.52 4.71 8.43 -10.86 -0.09 4.62 16 26 O -0.53 -7.22 18.03 5.56 0.10 -7.12 16 27 N -0.71 -5.30 5.46 -53.88 -0.29 -5.59 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 3.47 8.14 -40.82 -0.33 3.14 16 34 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 35 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.41 1.36 8.60 -40.82 -0.35 1.01 16 38 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.09 0.32 7.91 -51.93 -0.41 -0.09 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.42 3.30 8.95 -40.82 -0.37 2.93 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -38.49 376.34 -7.77 -46.26 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.05 Total: 0.76 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.31 Total: 1.47 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.13 Total: -42.84 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.28 Total: -23.48 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.49 -7.77 -46.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689440582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.154 kcal (2) G-P(sol) polarization free energy of solvation -38.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds