Wall clock time and date at job start Tue Mar 31 2020 05:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00060 * 2 1 4 4 C 1.53000 * 109.47384 * 66.03929 * 3 2 1 5 5 N 1.46503 * 109.46933 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99567 * 180.02562 * 5 4 3 7 7 O 1.21731 * 120.00314 * 359.97438 * 6 5 4 8 8 C 1.46341 * 119.99645 * 179.97438 * 6 5 4 9 9 C 1.36734 * 125.43670 * 179.97438 * 8 6 5 10 10 C 1.37345 * 113.33399 * 179.97438 * 9 8 6 11 11 C 1.34204 * 115.04329 * 0.02562 * 10 9 8 12 12 F 1.35098 * 124.53922 * 179.97438 * 11 10 9 13 13 S 1.70612 * 110.92031 * 359.97438 * 11 10 9 14 14 C 1.46900 * 111.00393 * 236.04357 * 2 1 3 15 15 C 1.50706 * 109.46697 * 293.95297 * 14 2 1 16 16 O 1.21294 * 120.00200 * 359.97438 * 15 14 2 17 17 N 1.34769 * 119.99587 * 179.97438 * 15 14 2 18 18 C 1.37102 * 120.00073 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99749 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00453 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99627 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46840 * 90.00367 * 22 20 18 24 24 H 1.48503 * 109.47271 * 209.99814 * 22 20 18 25 25 H 1.48499 * 109.47425 * 330.00192 * 22 20 18 26 26 H 1.09006 * 109.47072 * 60.00614 * 1 2 3 27 27 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47379 * 300.00279 * 1 2 3 29 29 H 1.09001 * 109.46566 * 306.04340 * 3 2 1 30 30 H 1.09002 * 109.47258 * 186.04507 * 3 2 1 31 31 H 1.09001 * 109.46933 * 60.00636 * 4 3 2 32 32 H 1.08998 * 109.46915 * 300.00423 * 4 3 2 33 33 H 0.97001 * 120.00085 * 359.97438 * 5 4 3 34 34 H 1.08004 * 123.33124 * 0.25071 * 9 8 6 35 35 H 1.07997 * 122.47544 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.46926 * 53.95061 * 14 2 1 37 37 H 1.08993 * 109.46943 * 173.95647 * 14 2 1 38 38 H 0.96999 * 120.00399 * 359.97438 * 17 15 14 39 39 H 0.97006 * 120.00071 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0576 1.3182 5 7 2.1559 3.4255 1.3178 6 6 1.9552 4.2244 2.3846 7 8 1.3378 3.8095 3.3482 8 6 2.4797 5.5906 2.3845 9 6 2.3414 6.4929 3.4024 10 6 2.9323 7.7045 3.1394 11 6 3.5359 7.7947 1.9442 12 9 4.1746 8.8949 1.4896 13 16 3.3885 6.3336 1.0756 14 6 1.9955 -0.7660 -1.1375 15 6 1.6370 -2.2205 -0.9726 16 8 1.0054 -2.5833 -0.0027 17 7 2.0181 -3.1180 -1.9029 18 6 1.6916 -4.4411 -1.7533 19 1 1.1292 -4.7642 -0.8897 20 6 2.0850 -5.3667 -2.7121 21 7 2.7696 -4.9737 -3.7626 22 14 1.6406 -7.1695 -2.5077 23 1 0.3283 -7.4318 -3.1516 24 1 2.6830 -8.0118 -3.1474 25 1 1.5571 -7.4979 -1.0619 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.5611 1.9273 -0.8310 30 1 3.0797 1.3444 -0.1082 31 1 2.0657 1.5018 2.1491 32 1 0.5471 2.0846 1.4263 33 1 2.6482 3.7559 0.5501 34 1 1.8228 6.2731 4.3240 35 1 2.9120 8.5243 3.8422 36 1 1.5612 -0.3874 -2.0627 37 1 3.0797 -0.6611 -1.1754 38 1 2.5228 -2.8279 -2.6788 39 1 3.0446 -5.6198 -4.4319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691002589.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:35 Heat of formation + Delta-G solvation = -66.460685 kcal Electronic energy + Delta-G solvation = -24023.341772 eV Core-core repulsion = 20007.924168 eV Total energy + Delta-G solvation = -4015.417604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.64607 -40.14320 -38.71637 -37.96051 -36.78951 -34.79592 -33.83038 -31.27517 -30.69296 -29.06803 -27.71708 -25.81139 -25.04766 -23.86729 -21.97059 -21.36189 -20.24218 -19.37300 -19.18833 -17.87019 -17.26085 -16.98707 -16.56121 -16.12421 -16.01169 -15.85798 -15.12276 -15.04480 -14.83895 -14.63648 -14.32920 -14.07640 -13.72167 -13.45961 -13.33867 -13.15182 -12.77490 -12.61616 -12.15746 -11.93816 -11.62266 -11.54218 -11.44550 -11.30157 -11.10469 -10.95983 -10.47868 -10.39569 -10.22762 -9.50300 -9.48007 -9.34280 -9.19725 -8.50668 -8.00867 -7.91645 -6.42958 -3.83663 -0.22935 0.39652 1.01861 1.68227 2.66741 2.78438 3.17203 3.26158 3.32242 3.72345 3.88406 3.99582 4.23402 4.35479 4.67862 4.72673 4.77181 4.92355 5.08738 5.22964 5.23323 5.33436 5.41909 5.59529 5.61172 5.65520 5.77175 5.82096 5.89381 5.96387 6.05845 6.25393 6.53030 7.03317 7.17532 7.28191 7.54394 7.77263 8.05142 8.60397 9.17094 9.52923 10.04696 10.74757 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.033988 B = 0.001742 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.628394 B =16071.082945 C =16686.414229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.514 5.514 3 C 0.043 3.957 4 C 0.122 3.878 5 N -0.723 5.723 6 C 0.592 3.408 7 O -0.520 6.520 8 C -0.259 4.259 9 C -0.035 4.035 10 C -0.181 4.181 11 C -0.021 4.021 12 F -0.098 7.098 13 S 0.225 5.775 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 H 0.016 0.984 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.396 0.604 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 26.629 6.339 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.086 4.086 4 C -0.001 4.001 5 N -0.375 5.375 6 C 0.377 3.623 7 O -0.397 6.397 8 C -0.380 4.380 9 C -0.067 4.067 10 C -0.214 4.214 11 C -0.159 4.159 12 F -0.077 7.077 13 S 0.489 5.511 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.460 6.460 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.230 0.770 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.605 25.264 6.503 26.217 hybrid contribution -0.075 0.783 -0.383 0.875 sum 2.529 26.047 6.120 26.876 Atomic orbital electron populations 1.22640 0.86406 1.04840 0.99153 1.61438 1.09002 1.10244 1.43175 1.22263 1.00898 0.89947 0.95497 1.21430 0.99881 0.79732 0.99085 1.45815 1.57899 1.14830 1.18959 1.16703 0.79712 0.82868 0.83015 1.90891 1.40615 1.74316 1.33876 1.24560 1.12740 1.00108 1.00585 1.20527 0.96740 0.90136 0.99271 1.20330 1.02926 1.00865 0.97260 1.21956 1.04515 0.90335 0.99063 1.91553 1.78999 1.48882 1.88262 1.83428 1.49668 1.01145 1.16838 1.21873 1.00703 0.94256 0.91602 1.19694 0.85566 0.86579 0.85304 1.90496 1.43871 1.80080 1.31567 1.41859 1.49430 1.07376 1.21398 1.19703 1.32912 0.82257 1.07930 0.87875 1.25261 0.96795 1.00595 0.95318 1.69610 1.38034 1.35789 1.10917 0.85854 0.77999 0.81712 0.78710 1.20441 1.20941 1.19388 0.96571 0.88307 0.91800 0.94437 0.90147 0.89694 0.90651 0.76988 0.81652 0.82271 0.93300 0.89278 0.77505 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.96 60.06 0.54 0.81 16 2 N -0.51 -8.11 4.50 -244.37 -1.10 -9.21 16 3 C 0.04 0.48 5.07 -3.82 -0.02 0.46 16 4 C 0.12 1.37 5.60 -4.04 -0.02 1.35 16 5 N -0.72 -6.73 5.55 -61.72 -0.34 -7.07 16 6 C 0.59 6.47 7.77 -13.00 -0.10 6.37 16 7 O -0.52 -7.62 16.84 5.16 0.09 -7.53 16 8 C -0.26 -2.17 6.44 -36.87 -0.24 -2.41 16 9 C -0.03 -0.26 10.00 -40.45 -0.40 -0.66 16 10 C -0.18 -1.15 10.16 -41.33 -0.42 -1.57 16 11 C -0.02 -0.15 8.10 29.31 0.24 0.09 16 12 F -0.10 -0.76 17.32 2.25 0.04 -0.72 16 13 S 0.22 1.38 22.14 -107.50 -2.38 -1.00 16 14 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 15 C 0.44 10.20 7.47 -10.99 -0.08 10.12 16 16 O -0.58 -15.23 13.91 5.55 0.08 -15.16 16 17 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 28 H 0.06 0.89 6.47 -51.93 -0.34 0.56 16 29 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.91 6.55 -51.93 -0.34 0.57 16 33 H 0.40 2.63 7.58 -40.82 -0.31 2.32 16 34 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 38 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -32.78 353.99 -7.90 -40.68 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.48 Total: 8.93 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.78 Total: 7.46 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.78 Total: -53.85 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.16 Total: -22.69 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 0.04 Total: -0.72 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.38 Total: -1.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.78 -7.90 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691002589.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.784 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds