Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35455 * 128.00322 * 2 1 4 4 O 1.34046 * 106.44375 * 180.23122 * 3 2 1 5 5 N 1.20922 * 111.56647 * 359.75318 * 4 3 2 6 6 C 1.30177 * 111.60340 * 359.97438 * 5 4 3 7 7 C 1.50705 * 126.80036 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47217 * 90.01777 * 7 6 5 9 9 C 1.46898 * 110.99589 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46893 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47164 * 60.00204 * 10 9 8 12 12 O 1.42903 * 109.47171 * 299.99938 * 10 9 8 13 13 C 1.53003 * 109.47376 * 180.02562 * 10 9 8 14 14 N 1.46494 * 109.47283 * 185.00021 * 13 10 9 15 15 C 1.34779 * 119.99921 * 179.97438 * 14 13 10 16 16 O 1.21281 * 120.00109 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99840 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47109 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00355 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99942 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00190 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00277 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99904 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47317 * 60.00627 * 23 21 19 25 25 H 1.48497 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47469 * 300.00620 * 23 21 19 27 27 H 1.09002 * 109.47339 * 270.16506 * 1 2 3 28 28 H 1.09004 * 109.46973 * 30.16450 * 1 2 3 29 29 H 1.08995 * 109.46836 * 150.16457 * 1 2 3 30 30 H 1.07997 * 126.78202 * 359.96213 * 3 2 1 31 31 H 1.09002 * 109.47162 * 330.01637 * 7 6 5 32 32 H 1.09003 * 109.46881 * 210.01922 * 7 6 5 33 33 H 1.00893 * 110.99943 * 303.95254 * 8 7 6 34 34 H 1.08999 * 109.47049 * 60.00398 * 9 8 7 35 35 H 1.08997 * 109.47646 * 300.00448 * 9 8 7 36 36 H 0.96700 * 114.00311 * 300.00378 * 12 10 9 37 37 H 1.09005 * 109.46682 * 304.99749 * 13 10 9 38 38 H 1.08999 * 109.47221 * 64.99915 * 13 10 9 39 39 H 0.96999 * 120.00388 * 359.97438 * 14 13 10 40 40 H 1.08992 * 109.47506 * 300.00283 * 17 15 14 41 41 H 1.08999 * 109.46876 * 60.00368 * 17 15 14 42 42 H 0.97001 * 120.00624 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0674 0.0000 4 8 3.5877 0.5748 -0.0052 5 7 3.5879 -0.6344 -0.0033 6 6 2.3776 -1.1139 0.0037 7 6 1.9828 -2.5683 0.0074 8 7 1.8615 -3.0392 1.3936 9 6 1.4763 -4.4562 1.4363 10 6 1.3596 -4.9092 2.8930 11 1 0.6021 -4.3114 3.3999 12 8 2.6183 -4.7378 3.5475 13 6 0.9591 -6.3852 2.9376 14 7 0.7311 -6.7876 4.3276 15 6 0.3659 -8.0535 4.6115 16 8 0.2255 -8.8594 3.7161 17 6 0.1319 -8.4675 6.0415 18 16 -0.3421 -10.2135 6.0942 19 6 -0.5481 -10.4225 7.8316 20 1 -0.3822 -9.5897 8.4990 21 6 -0.9245 -11.6569 8.3424 22 7 -1.1272 -12.6717 7.5290 23 14 -1.1422 -11.8785 10.1844 24 1 -2.1946 -10.9519 10.6735 25 1 -1.5436 -13.2793 10.4704 26 1 0.1389 -11.5805 10.8736 27 1 -0.3634 0.0030 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3633 -0.8914 -0.5113 30 1 2.0576 2.1095 -0.0006 31 1 2.7438 -3.1527 -0.5096 32 1 1.0261 -2.6863 -0.5015 33 1 2.7165 -2.8810 1.9053 34 1 2.2336 -5.0539 0.9291 35 1 0.5161 -4.5869 0.9374 36 1 3.3408 -5.2419 3.1489 37 1 0.0446 -6.5310 2.3625 38 1 1.7577 -6.9915 2.5102 39 1 0.8430 -6.1430 5.0438 40 1 1.0465 -8.3222 6.6162 41 1 -0.6663 -7.8610 6.4694 42 1 -1.3899 -13.5345 7.8859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699037085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = -32.149645 kcal Electronic energy + Delta-G solvation = -24107.797894 eV Core-core repulsion = 20217.328433 eV Total energy + Delta-G solvation = -3890.469460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.40 seconds Orbital eigenvalues (eV) -45.35942 -39.50652 -38.32790 -36.60866 -34.66154 -34.14995 -32.65825 -32.42412 -30.77902 -29.15593 -28.52423 -26.88259 -25.47847 -24.06121 -22.17762 -22.03980 -21.48775 -20.30478 -18.08848 -18.00392 -17.91684 -17.13456 -16.77831 -16.32828 -15.85633 -15.52653 -15.22427 -14.95652 -14.79624 -14.77288 -14.02803 -13.90567 -13.75468 -13.70329 -13.36082 -13.08904 -12.94448 -12.88382 -12.55797 -12.48733 -12.35625 -11.74709 -11.54592 -11.34537 -11.04133 -11.03172 -10.78425 -10.62579 -10.39362 -9.81856 -9.78549 -9.42733 -9.06174 -9.01269 -8.92041 -8.24098 -6.49861 -6.21081 -3.91827 1.06338 1.70495 2.83466 2.97327 3.08023 3.24247 3.26781 3.29852 3.47756 3.69242 3.90680 4.02859 4.06611 4.21173 4.42265 4.50267 4.62701 4.62851 4.68579 4.83714 4.99569 5.12695 5.14107 5.15426 5.17528 5.18127 5.23171 5.34307 5.37826 5.50900 5.68714 5.73228 5.78613 5.90409 6.15419 6.31511 6.57314 6.79619 7.23812 7.59944 7.69927 7.82380 8.35667 8.59359 9.24138 10.86298 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035754 B = 0.001552 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.933592 B =18036.972712 C =18177.722878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.183 4.183 3 C -0.069 4.069 4 O 0.102 5.898 5 N -0.360 5.360 6 C 0.020 3.980 7 C 0.138 3.862 8 N -0.677 5.677 9 C 0.030 3.970 10 C 0.099 3.901 11 H 0.115 0.885 12 O -0.556 6.556 13 C 0.092 3.908 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.216 0.784 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.352 0.648 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.375 0.625 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 28.486 -16.454 33.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.187 4.187 3 C -0.150 4.150 4 O 0.035 5.965 5 N -0.064 5.064 6 C -0.140 4.140 7 C 0.009 3.991 8 N -0.311 5.311 9 C -0.100 4.100 10 C 0.039 3.961 11 H 0.133 0.867 12 O -0.361 6.361 13 C -0.034 4.034 14 N -0.388 5.388 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.172 0.828 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.223 0.777 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.452 26.988 -17.542 32.647 hybrid contribution 0.357 0.558 1.857 1.971 sum 5.808 27.546 -15.685 32.227 Atomic orbital electron populations 1.20094 0.87160 1.02938 1.03102 1.21322 0.98840 0.91357 1.07208 1.25794 0.83074 1.01246 1.04892 1.84819 1.29200 1.15393 1.67135 1.73859 1.22426 0.91535 1.18553 1.23330 0.88544 0.98304 1.03797 1.20157 1.01402 0.86679 0.90908 1.60332 1.40871 1.17822 1.12051 1.22585 1.02067 0.88107 0.97227 1.22216 0.87062 0.94478 0.92299 0.86699 1.86631 1.18539 1.72184 1.58724 1.21892 1.02203 0.94509 0.84780 1.45863 1.72412 1.12430 1.08095 1.20334 0.75538 0.81122 0.91192 1.90699 1.49608 1.50948 1.48220 1.23525 1.04919 1.07107 0.94824 1.85369 1.88832 0.99154 1.10060 1.22835 1.54247 0.99462 0.91909 0.90942 1.24987 0.94633 0.94841 0.99082 1.70005 1.43767 1.01587 1.34973 0.86221 0.78754 0.77401 0.83104 1.19931 1.20810 1.19937 0.90392 0.91202 0.90966 0.76776 0.93274 0.88637 0.82830 0.94166 0.89248 0.77741 0.90606 0.91388 0.76289 0.89155 0.89169 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.37 36.01 0.37 0.05 16 2 C -0.18 -1.19 6.32 -104.42 -0.66 -1.85 16 3 C -0.07 -0.37 12.26 29.74 0.36 -0.01 16 4 O 0.10 0.84 11.20 17.16 0.19 1.03 16 5 N -0.36 -3.53 12.07 33.42 0.40 -3.13 16 6 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 7 C 0.14 0.95 6.19 -4.97 -0.03 0.92 16 8 N -0.68 -4.91 6.49 -115.06 -0.75 -5.65 16 9 C 0.03 0.19 5.39 -3.82 -0.02 0.17 16 10 C 0.10 0.76 3.27 -26.73 -0.09 0.67 16 11 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 12 O -0.56 -4.63 12.62 -35.23 -0.44 -5.08 16 13 C 0.09 0.95 5.31 -4.04 -0.02 0.93 16 14 N -0.73 -9.62 5.50 -60.29 -0.33 -9.95 16 15 C 0.53 9.88 7.85 -10.98 -0.09 9.80 16 16 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 17 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.29 7.65 -51.93 -0.40 -0.10 16 30 H 0.22 0.24 8.06 -52.49 -0.42 -0.18 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.53 7.65 -51.93 -0.40 0.13 16 33 H 0.35 2.90 8.11 -39.30 -0.32 2.58 16 34 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.38 2.19 9.05 45.56 0.41 2.60 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 4.47 8.47 -40.82 -0.35 4.12 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -36.64 379.90 -7.17 -43.80 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.24 Total: 3.46 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.31 Total: -5.65 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.06 Total: -44.24 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.16 Total: -15.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.64 -7.17 -43.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699037085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.654 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.40 seconds