Wall clock time and date at job start Tue Mar 31 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35454 * 128.00808 * 2 1 4 4 O 1.34044 * 106.44352 * 180.23507 * 3 2 1 5 5 N 1.20923 * 111.56710 * 359.74128 * 4 3 2 6 6 C 1.30179 * 111.60804 * 0.02562 * 5 4 3 7 7 C 1.50696 * 126.80485 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46722 * 90.02411 * 7 6 5 9 9 C 1.46900 * 110.99888 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47407 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47269 * 305.00036 * 10 9 8 12 12 O 1.42903 * 109.46459 * 64.99929 * 10 9 8 13 13 C 1.53001 * 109.47376 * 184.99739 * 10 9 8 14 14 N 1.46497 * 109.46900 * 180.02562 * 13 10 9 15 15 C 1.34783 * 119.99638 * 180.02562 * 14 13 10 16 16 O 1.21276 * 119.99934 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99567 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.46548 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99641 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99843 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99639 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00457 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99706 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46881 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46977 * 120.00200 * 23 21 19 26 26 H 1.48496 * 109.47103 * 240.00068 * 23 21 19 27 27 H 1.09005 * 109.47234 * 270.17131 * 1 2 3 28 28 H 1.09002 * 109.46823 * 30.16467 * 1 2 3 29 29 H 1.09002 * 109.47639 * 150.16605 * 1 2 3 30 30 H 1.07994 * 126.77921 * 359.96309 * 3 2 1 31 31 H 1.08994 * 109.47000 * 330.02447 * 7 6 5 32 32 H 1.08992 * 109.47389 * 210.01953 * 7 6 5 33 33 H 1.00901 * 111.00196 * 303.94903 * 8 7 6 34 34 H 1.09005 * 109.47208 * 59.99899 * 9 8 7 35 35 H 1.08999 * 109.46786 * 299.99678 * 9 8 7 36 36 H 0.96700 * 114.00311 * 60.00313 * 12 10 9 37 37 H 1.08999 * 109.47164 * 300.00361 * 13 10 9 38 38 H 1.08997 * 109.47124 * 60.00063 * 13 10 9 39 39 H 0.96996 * 120.00310 * 359.97438 * 14 13 10 40 40 H 1.08998 * 109.47167 * 299.99565 * 17 15 14 41 41 H 1.09001 * 109.47098 * 60.00477 * 17 15 14 42 42 H 0.96996 * 120.00031 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5877 0.5746 -0.0053 5 7 3.5877 -0.6346 -0.0033 6 6 2.3775 -1.1141 0.0029 7 6 1.9825 -2.5684 0.0066 8 7 1.8600 -3.0389 1.3928 9 6 1.4759 -4.4562 1.4356 10 6 1.3591 -4.9092 2.8924 11 1 2.2914 -4.6956 3.4152 12 8 0.2868 -4.2076 3.5247 13 6 1.0817 -6.4132 2.9381 14 7 0.9693 -6.8467 4.3329 15 6 0.7253 -8.1411 4.6187 16 8 0.5984 -8.9467 3.7211 17 6 0.6102 -8.5872 6.0536 18 16 0.2819 -10.3664 6.1076 19 6 0.1979 -10.6091 7.8509 20 1 0.3362 -9.7726 8.5198 21 6 -0.0470 -11.8752 8.3642 22 7 -0.2160 -12.8947 7.5488 23 14 -0.1368 -12.1324 10.2123 24 1 0.0852 -10.8370 10.9036 25 1 -1.4759 -12.6628 10.5737 26 1 0.9083 -13.1017 10.6285 27 1 -0.3634 0.0031 1.0277 28 1 -0.3633 0.8885 -0.5164 29 1 -0.3634 -0.8915 -0.5112 30 1 2.0577 2.1094 -0.0006 31 1 2.7440 -3.1529 -0.5096 32 1 1.0263 -2.6865 -0.5030 33 1 2.7147 -2.8807 1.9053 34 1 2.2342 -5.0536 0.9294 35 1 0.5163 -4.5877 0.9358 36 1 -0.5754 -4.3514 3.1112 37 1 0.1495 -6.6267 2.4153 38 1 1.8996 -6.9483 2.4557 39 1 1.0712 -6.2024 5.0508 40 1 1.5424 -8.3733 6.5764 41 1 -0.2080 -8.0523 6.5358 42 1 -0.3875 -13.7794 7.9076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699037086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:34 Heat of formation + Delta-G solvation = -30.641052 kcal Electronic energy + Delta-G solvation = -24114.508332 eV Core-core repulsion = 20224.104289 eV Total energy + Delta-G solvation = -3890.404043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.35825 -39.47836 -38.25129 -36.62555 -34.69060 -34.08882 -32.66261 -32.42641 -30.74090 -29.15515 -28.51919 -26.86073 -25.48220 -24.06657 -22.23613 -22.03372 -21.46690 -20.30315 -18.07198 -18.00111 -17.91512 -17.15141 -16.63515 -16.34449 -15.65813 -15.62109 -15.20854 -14.96094 -14.81175 -14.79966 -14.12133 -13.91492 -13.73538 -13.69808 -13.22498 -13.06790 -12.95586 -12.91742 -12.56209 -12.46352 -12.36657 -11.75024 -11.53914 -11.33296 -11.06704 -11.01675 -10.76814 -10.57902 -10.32675 -9.80027 -9.78188 -9.42613 -9.07857 -8.99518 -8.91020 -8.23403 -6.50004 -6.21723 -3.92210 1.06389 1.70633 2.83570 2.97316 3.08104 3.21948 3.26969 3.31736 3.47936 3.69029 3.89502 4.02388 4.16887 4.20628 4.39484 4.45521 4.61834 4.64192 4.74554 4.83281 4.99879 5.08424 5.13641 5.15843 5.17172 5.18631 5.23343 5.34689 5.38155 5.51098 5.68724 5.73701 5.76798 5.90425 6.15460 6.30644 6.57601 6.73593 7.37822 7.60363 7.70707 7.82347 8.35857 8.59596 9.23898 10.85796 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.001551 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.075050 B =18051.496568 C =18228.510163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.182 4.182 3 C -0.069 4.069 4 O 0.102 5.898 5 N -0.361 5.361 6 C 0.020 3.980 7 C 0.138 3.862 8 N -0.672 5.672 9 C 0.029 3.971 10 C 0.102 3.898 11 H 0.103 0.897 12 O -0.545 6.545 13 C 0.091 3.909 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.153 4.153 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.216 0.784 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.346 0.654 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.376 0.624 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 29.189 -16.495 33.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.186 4.186 3 C -0.150 4.150 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.139 4.139 7 C 0.008 3.992 8 N -0.305 5.305 9 C -0.101 4.101 10 C 0.042 3.958 11 H 0.121 0.879 12 O -0.350 6.350 13 C -0.035 4.035 14 N -0.388 5.388 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.303 4.303 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.232 0.768 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.164 0.836 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.224 0.776 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.238 0.762 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.387 27.512 -17.580 32.824 hybrid contribution -0.226 0.671 1.842 1.973 sum 3.161 28.183 -15.737 32.434 Atomic orbital electron populations 1.20090 0.87158 1.02869 1.03134 1.21321 0.98846 0.91342 1.07129 1.25791 0.83071 1.01249 1.04925 1.84817 1.29208 1.15382 1.67156 1.73858 1.22439 0.91550 1.18611 1.23329 0.88536 0.98304 1.03772 1.20157 1.01393 0.86695 0.90906 1.60364 1.40145 1.18018 1.11924 1.22631 1.01987 0.88062 0.97389 1.22086 0.92085 0.89311 0.92346 0.87873 1.86611 1.18560 1.71735 1.58110 1.21894 1.02764 0.94195 0.84646 1.45850 1.75488 1.09791 1.07660 1.20335 0.75272 0.81295 0.91293 1.90698 1.48168 1.52337 1.48278 1.23525 1.05047 1.07027 0.94748 1.85379 1.93202 0.95365 1.09567 1.22919 1.56667 0.97253 0.91462 0.90832 1.24996 0.94559 0.94917 0.99129 1.70028 1.45460 1.00109 1.34733 0.86110 0.77917 0.78353 0.83080 1.19599 1.20561 1.20569 0.90332 0.91245 0.91014 0.76783 0.93260 0.88652 0.83571 0.93534 0.89785 0.77621 0.91213 0.90846 0.76229 0.89200 0.89120 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.37 36.00 0.37 0.05 16 2 C -0.18 -1.18 6.32 -104.42 -0.66 -1.84 16 3 C -0.07 -0.37 12.26 29.74 0.36 -0.01 16 4 O 0.10 0.84 11.20 17.17 0.19 1.03 16 5 N -0.36 -3.53 12.07 33.43 0.40 -3.13 16 6 C 0.02 0.16 6.84 -82.10 -0.56 -0.40 16 7 C 0.14 0.94 6.19 -4.98 -0.03 0.91 16 8 N -0.67 -4.79 6.44 -115.06 -0.74 -5.53 16 9 C 0.03 0.18 5.32 -3.82 -0.02 0.16 16 10 C 0.10 0.78 3.23 -26.73 -0.09 0.70 16 11 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 12 O -0.55 -4.69 13.03 -35.23 -0.46 -5.15 16 13 C 0.09 0.94 5.34 -4.04 -0.02 0.92 16 14 N -0.73 -9.63 5.45 -60.30 -0.33 -9.95 16 15 C 0.53 9.88 7.85 -10.98 -0.09 9.80 16 16 O -0.52 -11.73 15.86 5.56 0.09 -11.65 16 17 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.22 0.25 8.06 -52.49 -0.42 -0.18 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.52 7.65 -51.93 -0.40 0.13 16 33 H 0.35 2.70 8.72 -39.29 -0.34 2.36 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.38 2.32 9.05 45.56 0.41 2.73 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 4.51 8.35 -40.82 -0.34 4.17 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -36.83 380.61 -7.18 -44.01 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.26 Total: 3.19 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.31 Total: -5.63 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.07 Total: -44.12 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.18 Total: -15.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.83 -7.18 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699037086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.372 kcal (2) G-P(sol) polarization free energy of solvation -36.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds