Wall clock time and date at job start Tue Mar 31 2020 07:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35711 * 117.00459 * 2 1 4 4 C 1.41930 * 126.87862 * 180.32135 * 3 2 1 5 5 C 1.35275 * 103.95565 * 180.14140 * 4 3 2 6 6 C 1.50699 * 126.70756 * 179.87815 * 5 4 3 7 7 N 1.46906 * 109.47140 * 89.71250 * 6 5 4 8 8 C 1.46898 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47138 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.46937 * 295.00420 * 9 8 7 11 11 C 1.52993 * 109.47268 * 174.99901 * 9 8 7 12 12 N 1.46500 * 109.46616 * 55.00041 * 9 8 7 13 13 C 1.34783 * 119.99492 * 205.00467 * 12 9 8 14 14 O 1.21280 * 120.00245 * 359.97438 * 13 12 9 15 15 C 1.50698 * 120.00020 * 180.02562 * 13 12 9 16 16 S 1.80992 * 109.47273 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00205 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99917 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00149 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99930 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47103 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47386 * 120.00031 * 21 19 17 24 24 H 1.48504 * 109.46988 * 240.00016 * 21 19 17 25 25 O 1.34083 * 106.58541 * 359.61834 * 5 4 3 26 26 N 1.20914 * 111.71238 * 0.26189 * 25 5 4 27 27 H 1.09000 * 109.47687 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47005 * 300.00037 * 1 2 3 29 29 H 1.09000 * 109.47414 * 59.99572 * 1 2 3 30 30 H 1.07998 * 128.02213 * 0.03787 * 4 3 2 31 31 H 1.09004 * 109.47103 * 329.71351 * 6 5 4 32 32 H 1.09000 * 109.47247 * 209.71228 * 6 5 4 33 33 H 1.00901 * 111.00013 * 303.95472 * 7 6 5 34 34 H 1.08997 * 109.47334 * 299.99788 * 8 7 6 35 35 H 1.08995 * 109.47296 * 60.00089 * 8 7 6 36 36 H 1.09000 * 109.47314 * 179.97438 * 11 9 8 37 37 H 1.09004 * 109.47456 * 299.99875 * 11 9 8 38 38 H 1.09002 * 109.47076 * 60.00200 * 11 9 8 39 39 H 0.96993 * 120.00698 * 25.00021 * 12 9 8 40 40 H 1.09009 * 109.46689 * 299.99502 * 15 13 12 41 41 H 1.09002 * 109.47821 * 59.99138 * 15 13 12 42 42 H 0.97001 * 120.00195 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4525 -0.0064 5 6 3.5397 2.8018 -0.0002 6 6 4.8089 3.6143 -0.0004 7 7 5.2205 3.8792 -1.3856 8 6 6.4569 4.6714 -1.4250 9 6 6.8527 4.9270 -2.8807 10 1 7.1011 3.9807 -3.3611 11 6 8.0682 5.8551 -2.9233 12 7 5.7338 5.5548 -3.5879 13 6 5.6238 5.4251 -4.9249 14 8 6.4514 4.7890 -5.5426 15 6 4.4732 6.0713 -5.6525 16 16 4.6044 5.7186 -7.4229 17 6 3.1764 6.5671 -8.0107 18 1 2.5360 7.0914 -7.3168 19 6 2.8739 6.5609 -9.3653 20 7 3.6536 5.9208 -10.2108 21 14 1.3604 7.4612 -9.9885 22 1 0.6563 8.0960 -8.8453 23 1 1.7711 8.5066 -10.9597 24 1 0.4501 6.4960 -10.6556 25 8 2.2852 3.2751 0.0004 26 7 1.4701 2.3819 0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.2447 0.7284 -0.0128 31 1 5.5951 3.0603 0.5126 32 1 4.6354 4.5595 0.5141 33 1 5.3252 3.0189 -1.9024 34 1 6.2944 5.6239 -0.9205 35 1 7.2547 4.1252 -0.9217 36 1 8.3504 6.0368 -3.9604 37 1 7.8198 6.8015 -2.4429 38 1 8.9007 5.3880 -2.3971 39 1 5.0721 6.0637 -3.0940 40 1 3.5327 5.6734 -5.2711 41 1 4.5024 7.1493 -5.4940 42 1 3.4420 5.9161 -11.1575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699393788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:42 Heat of formation + Delta-G solvation = -7.283565 kcal Electronic energy + Delta-G solvation = -24797.116584 eV Core-core repulsion = 20907.725398 eV Total energy + Delta-G solvation = -3889.391186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -45.16620 -39.37579 -39.11521 -37.32143 -34.99128 -33.32813 -32.38349 -32.12308 -31.03080 -28.45717 -28.06280 -27.10292 -25.43534 -24.26763 -23.64255 -21.74288 -21.35838 -20.18979 -18.38114 -18.05976 -17.75392 -17.04183 -16.59215 -16.26831 -15.83709 -15.51721 -15.29999 -15.19906 -14.76267 -14.66422 -14.51290 -14.05367 -14.02856 -13.39858 -13.12619 -12.76126 -12.67366 -12.53017 -12.42531 -12.26463 -12.17251 -11.96774 -11.66254 -11.41547 -11.04312 -11.01565 -10.96448 -10.70818 -9.99280 -9.75080 -9.52718 -9.29979 -9.03155 -8.93202 -8.76599 -8.16850 -6.43899 -6.17322 -3.86797 1.06158 1.96478 2.45255 2.77233 3.11282 3.21270 3.24971 3.31889 3.37561 3.69790 3.85358 3.93419 4.25271 4.40907 4.50734 4.61567 4.72295 4.81351 4.83631 4.86587 4.97634 5.15217 5.15798 5.18025 5.21355 5.26209 5.32605 5.39988 5.44786 5.58083 5.73922 5.98663 6.00918 6.12748 6.24957 6.41667 6.66203 6.75137 6.87878 7.64862 7.88181 7.96167 8.40443 8.74799 9.28386 10.90190 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.002725 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.353799 B =10271.939399 C =12646.791558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.229 4.229 5 C 0.002 3.998 6 C 0.138 3.862 7 N -0.683 5.683 8 C 0.053 3.947 9 C 0.146 3.854 10 H 0.086 0.914 11 C -0.163 4.163 12 N -0.721 5.721 13 C 0.534 3.466 14 O -0.524 6.524 15 C -0.152 4.152 16 S -0.063 6.063 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 O 0.112 5.888 26 N -0.406 5.406 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.177 0.823 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.352 0.648 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.401 0.599 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -6.654 26.885 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.251 4.251 5 C -0.063 4.063 6 C 0.008 3.992 7 N -0.316 5.316 8 C -0.077 4.077 9 C 0.040 3.960 10 H 0.104 0.896 11 C -0.222 4.222 12 N -0.375 5.375 13 C 0.320 3.680 14 O -0.399 6.399 15 C -0.303 4.303 16 S 0.164 5.836 17 C -0.681 4.681 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 O 0.051 5.949 26 N -0.131 5.131 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.194 0.806 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.236 0.764 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.222 -7.115 25.610 26.673 hybrid contribution -1.269 0.356 0.754 1.518 sum 0.952 -6.760 26.364 27.233 Atomic orbital electron populations 1.23078 0.76700 1.04134 1.02461 1.86181 1.22699 1.20903 1.89381 1.21996 0.90879 0.85767 1.00456 1.21803 0.94471 0.95673 1.13203 1.24106 0.88491 0.92743 1.00913 1.20348 0.88045 0.99136 0.91630 1.60355 1.34492 1.25438 1.11272 1.22334 0.89942 0.98642 0.96749 1.20827 0.86998 0.97576 0.90625 0.89638 1.22156 0.97104 0.99530 1.03395 1.45864 1.28410 1.56024 1.07198 1.20253 0.86302 0.79828 0.81580 1.90685 1.42356 1.40361 1.66505 1.23515 0.98891 1.03152 1.04717 1.85347 1.36079 1.70222 0.91973 1.22920 1.11665 1.38038 0.95469 0.90911 1.24989 0.97438 0.95491 0.95729 1.70030 1.36966 1.40202 1.03201 0.86129 0.81497 0.79182 0.78765 1.19594 1.20604 1.20613 1.84832 1.12070 1.29808 1.68209 1.74168 1.15681 0.96738 1.26499 0.87627 0.92315 0.92026 0.80575 0.91279 0.88048 0.82926 0.89851 0.93327 0.91287 0.92381 0.91995 0.76429 0.89248 0.89406 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.33 16 2 O -0.29 -3.09 10.57 -18.84 -0.20 -3.29 16 3 C 0.21 2.37 8.01 -16.66 -0.13 2.24 16 4 C -0.23 -2.05 11.11 -39.23 -0.44 -2.48 16 5 C 0.00 0.02 6.99 -35.36 -0.25 -0.23 16 6 C 0.14 0.76 6.25 -4.97 -0.03 0.73 16 7 N -0.68 -5.00 6.21 -115.05 -0.71 -5.72 16 8 C 0.05 0.34 5.24 -3.82 -0.02 0.32 16 9 C 0.15 1.48 2.81 -67.93 -0.19 1.29 16 10 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 11 C -0.16 -1.56 9.48 37.15 0.35 -1.21 16 12 N -0.72 -9.24 4.80 -53.81 -0.26 -9.50 16 13 C 0.53 9.86 7.81 -10.98 -0.09 9.78 16 14 O -0.52 -11.70 15.52 5.56 0.09 -11.61 16 15 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 16 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 17 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 18 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 21 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 O 0.11 1.27 11.19 17.06 0.19 1.46 16 26 N -0.41 -5.07 11.54 30.38 0.35 -4.72 16 27 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.35 2.83 8.72 -39.29 -0.34 2.49 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 40 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -36.54 380.87 -6.72 -43.27 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.13 Total: 1.63 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.71 Total: -4.28 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.11 Total: -45.71 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.54 -6.72 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699393788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.982 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds