Wall clock time and date at job start Tue Mar 31 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34470 * 126.16269 * 2 1 4 4 C 1.30261 * 108.69841 * 180.02562 * 3 2 1 5 5 O 1.33961 * 108.75993 * 359.73276 * 4 3 2 6 6 C 1.34331 * 126.16668 * 180.02562 * 2 1 3 7 7 C 1.50707 * 126.44014 * 359.97438 * 6 2 1 8 8 N 1.46902 * 109.46656 * 90.00353 * 7 6 2 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47264 * 60.00068 * 10 9 8 12 12 O 1.42897 * 109.47106 * 300.00189 * 10 9 8 13 13 C 1.52996 * 109.47077 * 179.97438 * 10 9 8 14 14 N 1.46501 * 109.47188 * 185.00169 * 13 10 9 15 15 C 1.34771 * 120.00424 * 180.02562 * 14 13 10 16 16 O 1.21284 * 119.99706 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00428 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47313 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00223 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99785 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00108 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00188 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46588 * 90.00089 * 23 21 19 25 25 H 1.48497 * 109.47169 * 210.00128 * 23 21 19 26 26 H 1.48494 * 109.46791 * 330.00482 * 23 21 19 27 27 H 1.08997 * 109.46869 * 269.99872 * 1 2 3 28 28 H 1.08997 * 109.47455 * 30.00304 * 1 2 3 29 29 H 1.09002 * 109.46937 * 150.00065 * 1 2 3 30 30 H 1.08002 * 125.61994 * 180.02562 * 4 3 2 31 31 H 1.08990 * 109.47142 * 330.00338 * 7 6 2 32 32 H 1.09004 * 109.46726 * 210.00235 * 7 6 2 33 33 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 34 34 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 35 35 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 36 36 H 0.96697 * 114.00275 * 299.99527 * 12 10 9 37 37 H 1.09000 * 109.47398 * 304.99994 * 13 10 9 38 38 H 1.09003 * 109.47206 * 65.00488 * 13 10 9 39 39 H 0.97005 * 119.99850 * 0.02562 * 14 13 10 40 40 H 1.08997 * 109.47691 * 299.99756 * 17 15 14 41 41 H 1.09003 * 109.47504 * 59.99939 * 17 15 14 42 42 H 0.97004 * 119.99959 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5734 -0.6446 0.0050 6 6 2.2998 -1.0845 -0.0005 7 6 1.8493 -2.5226 -0.0006 8 7 1.7025 -2.9896 -1.3857 9 6 1.2641 -4.3911 -1.4250 10 6 1.1222 -4.8404 -2.8806 11 1 2.0837 -4.7462 -3.3854 12 8 0.1556 -4.0203 -3.5401 13 6 0.6662 -6.3003 -2.9215 14 7 0.6452 -6.7666 -4.3102 15 6 0.2720 -8.0308 -4.5910 16 8 -0.0460 -8.7826 -3.6940 17 6 0.2498 -8.5102 -6.0195 18 16 -0.2895 -10.2373 -6.0680 19 6 -0.2242 -10.5297 -7.8043 20 1 0.0853 -9.7405 -8.4736 21 6 -0.5705 -11.7742 -8.3120 22 7 -0.9482 -12.7359 -7.4965 23 14 -0.5020 -12.0839 -10.1530 24 1 0.8466 -12.5852 -10.5206 25 1 -1.5241 -13.0956 -10.5231 26 1 -0.7739 -10.8171 -10.8784 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 4.4066 1.3434 -0.0003 31 1 0.8916 -2.6034 0.5135 32 1 2.5902 -3.1354 0.5129 33 1 1.0690 -2.3976 -1.9016 34 1 2.0013 -5.0166 -0.9215 35 1 0.3024 -4.4853 -0.9206 36 1 -0.7257 -4.0548 -3.1437 37 1 1.3573 -6.9132 -2.3429 38 1 -0.3342 -6.3806 -2.4962 39 1 0.8999 -6.1654 -5.0276 40 1 -0.4413 -7.8972 -6.5979 41 1 1.2501 -8.4303 -6.4453 42 1 -1.1899 -13.6058 -7.8513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753906451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:41 Heat of formation + Delta-G solvation = -68.615111 kcal Electronic energy + Delta-G solvation = -24151.354568 eV Core-core repulsion = 20259.303846 eV Total energy + Delta-G solvation = -3892.050722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -43.77343 -39.53202 -38.34138 -36.24910 -35.51572 -34.17654 -32.45688 -32.42946 -30.72082 -29.33862 -28.07468 -26.01424 -25.45452 -23.96724 -22.66465 -22.12005 -21.18781 -20.32236 -17.96398 -17.79874 -17.23858 -17.10086 -16.82631 -16.35801 -16.02154 -15.48297 -15.07020 -14.98275 -14.87935 -14.80227 -14.50949 -13.94458 -13.77791 -13.66601 -13.43841 -13.10026 -13.03153 -12.89040 -12.56528 -12.46218 -12.40639 -11.76285 -11.45118 -11.40048 -11.06483 -11.02649 -10.95829 -10.78504 -10.55733 -9.81879 -9.44876 -9.29594 -9.07640 -9.00858 -8.93932 -8.24676 -6.50723 -6.22100 -3.92769 0.95668 2.19066 2.30069 2.95811 3.06475 3.22438 3.26328 3.30482 3.49919 3.69852 3.79792 4.01447 4.20232 4.22097 4.31894 4.40954 4.58307 4.60756 4.61341 4.81877 5.05587 5.08094 5.08743 5.13202 5.14093 5.16144 5.20321 5.48946 5.49166 5.60484 5.66303 5.76125 5.87372 5.89257 6.14413 6.22667 6.55172 6.72811 7.19709 7.26232 7.59467 7.68103 8.35051 8.57754 9.23378 10.85323 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.037744 B = 0.001555 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.665163 B =17998.215867 C =18175.147848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.008 4.008 3 N -0.488 5.488 4 C 0.174 3.826 5 O -0.195 6.195 6 C -0.040 4.040 7 C 0.143 3.857 8 N -0.681 5.681 9 C 0.030 3.970 10 C 0.099 3.901 11 H 0.116 0.884 12 O -0.555 6.555 13 C 0.092 3.908 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.250 0.750 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.353 0.647 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.375 0.625 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 26.441 16.453 31.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 N -0.217 5.217 4 C -0.052 4.052 5 O -0.080 6.080 6 C -0.094 4.094 7 C 0.014 3.986 8 N -0.314 5.314 9 C -0.100 4.100 10 C 0.039 3.961 11 H 0.133 0.867 12 O -0.360 6.360 13 C -0.034 4.034 14 N -0.388 5.388 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.266 0.734 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.172 0.828 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.222 0.778 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.237 0.763 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.412 25.559 17.534 31.651 hybrid contribution -0.378 0.375 -1.859 1.933 sum 6.034 25.933 15.675 30.898 Atomic orbital electron populations 1.20136 0.86509 1.03446 1.02948 1.21567 0.97988 0.87685 1.05647 1.70368 1.01468 1.31700 1.18163 1.28054 0.97556 0.79369 1.00245 1.84450 1.29996 1.24491 1.69083 1.22950 0.80990 0.97280 1.08173 1.20241 1.00546 0.86659 0.91162 1.60322 1.55934 1.03320 1.11873 1.22595 1.00170 0.89814 0.97375 1.22219 0.93650 0.88055 0.92196 0.86669 1.86642 1.22522 1.68248 1.58594 1.21887 1.02314 0.94308 0.84865 1.45864 1.71203 1.13620 1.08135 1.20331 0.75796 0.80846 0.91194 1.90700 1.46377 1.54341 1.48050 1.23525 1.05360 1.06656 0.94840 1.85371 1.87013 1.00884 1.10183 1.22875 1.52772 1.00804 0.91936 0.90888 1.24992 0.94493 0.94997 0.99082 1.70021 1.42115 1.03317 1.34874 0.86163 0.78059 0.78205 0.83051 1.20262 1.20747 1.19685 0.90612 0.90247 0.91027 0.73408 0.91468 0.88779 0.82757 0.89155 0.93974 0.77791 0.90597 0.91344 0.76274 0.89141 0.89168 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.05 36.01 0.36 -0.04 16 2 C -0.01 -0.07 7.11 -82.81 -0.59 -0.66 16 3 N -0.49 -4.50 11.29 -11.18 -0.13 -4.63 16 4 C 0.17 1.19 13.23 52.10 0.69 1.88 16 5 O -0.19 -1.64 10.77 5.40 0.06 -1.58 16 6 C -0.04 -0.31 6.90 -35.68 -0.25 -0.56 16 7 C 0.14 0.81 5.84 -4.97 -0.03 0.78 16 8 N -0.68 -4.30 6.49 -115.05 -0.75 -5.05 16 9 C 0.03 0.17 5.39 -3.82 -0.02 0.15 16 10 C 0.10 0.70 3.27 -26.73 -0.09 0.61 16 11 H 0.12 0.92 8.14 -51.92 -0.42 0.49 16 12 O -0.56 -4.09 12.62 -35.23 -0.44 -4.54 16 13 C 0.09 0.91 5.31 -4.04 -0.02 0.89 16 14 N -0.73 -9.36 5.50 -60.30 -0.33 -9.69 16 15 C 0.53 9.73 7.85 -10.99 -0.09 9.65 16 16 O -0.52 -11.57 15.86 5.55 0.09 -11.48 16 17 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.28 7.79 -51.93 -0.40 -0.13 16 30 H 0.25 0.46 8.06 -52.49 -0.42 0.04 16 31 H 0.07 0.27 7.79 -51.93 -0.40 -0.14 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.35 2.27 8.11 -39.29 -0.32 1.95 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.37 1.71 9.05 45.56 0.41 2.12 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -37.79 380.12 -7.14 -44.93 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.26 Total: 2.34 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.39 Total: -3.14 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.47 Total: -44.77 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.30 Total: -17.60 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.79 -7.14 -44.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753906451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.681 kcal (2) G-P(sol) polarization free energy of solvation -37.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds