Wall clock time and date at job start Tue Mar 31 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47506 * 270.00283 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.00423 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 O 1.42903 * 112.93380 * 53.43425 * 15 14 13 17 17 C 1.53934 * 113.73787 * 281.73284 * 15 14 13 18 18 N 1.47954 * 86.18086 * 221.92065 * 17 15 14 19 19 C 1.46897 * 111.00136 * 137.58281 * 18 17 15 20 20 H 1.09001 * 110.43366 * 203.17735 * 19 18 17 21 21 C 1.54632 * 110.48829 * 80.63604 * 19 18 17 22 22 C 1.54473 * 101.76353 * 216.52177 * 21 19 18 23 23 N 1.46767 * 105.47390 * 25.41839 * 22 21 19 24 24 C 1.34418 * 111.29863 * 342.98035 * 23 22 21 25 25 O 1.21282 * 124.93944 * 180.44771 * 24 23 22 26 26 C 1.47958 * 90.76707 * 24.68444 * 18 17 15 27 27 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 29 29 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 30 30 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 31 31 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 32 32 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 33 33 H 0.96695 * 114.00720 * 309.66558 * 16 15 14 34 34 H 1.09007 * 113.75506 * 336.23284 * 17 15 14 35 35 H 1.09000 * 113.76161 * 107.59400 * 17 15 14 36 36 H 1.08993 * 110.96768 * 334.64481 * 21 19 18 37 37 H 1.09004 * 110.96516 * 98.40345 * 21 19 18 38 38 H 1.09000 * 110.24486 * 144.41351 * 22 21 19 39 39 H 1.09000 * 110.24918 * 266.41179 * 22 21 19 40 40 H 0.96999 * 124.34827 * 162.98384 * 23 22 21 41 41 H 1.08999 * 113.76417 * 220.99634 * 26 18 17 42 42 H 1.09007 * 113.75576 * 89.62909 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 6 3.5026 -8.6984 -0.0204 16 8 4.4346 -8.4608 1.0364 17 6 4.1594 -8.8708 -1.4018 18 7 4.2094 -10.3158 -1.0880 19 6 3.8278 -11.1216 -2.2554 20 1 3.4723 -12.1028 -1.9408 21 6 5.0216 -11.2649 -3.2277 22 6 4.3165 -11.2172 -4.6013 23 7 3.0720 -10.4724 -4.3770 24 6 2.7706 -10.4080 -3.0686 25 8 1.7928 -9.8583 -2.6073 26 6 3.0747 -10.1715 -0.1495 27 1 -0.4851 0.8400 0.0004 28 1 3.1252 -3.7316 0.8875 29 1 3.1238 -3.7309 -0.8925 30 1 3.8010 -6.1834 -0.0093 31 1 1.7235 -7.8794 0.8762 32 1 1.7203 -7.8707 -0.9037 33 1 4.7283 -7.5419 1.1027 34 1 3.5008 -8.6249 -2.2349 35 1 5.1414 -8.4046 -1.4825 36 1 5.7168 -10.4328 -3.1170 37 1 5.5302 -12.2181 -3.0831 38 1 4.9411 -10.6978 -5.3281 39 1 4.0948 -12.2270 -4.9468 40 1 2.5358 -10.0774 -5.0823 41 1 3.1900 -10.7445 0.7705 42 1 2.0989 -10.3060 -0.6163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754763148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:18 Heat of formation + Delta-G solvation = -66.078158 kcal Electronic energy + Delta-G solvation = -25926.343482 eV Core-core repulsion = 22034.402771 eV Total energy + Delta-G solvation = -3891.940711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -41.99637 -39.73728 -38.72463 -36.87893 -35.93004 -34.06523 -32.42378 -31.76755 -30.04298 -28.69596 -26.88893 -26.66478 -25.46852 -23.90869 -22.40937 -20.56063 -20.44519 -19.99755 -18.12535 -17.85412 -17.47062 -17.13013 -16.51555 -16.14485 -15.62914 -15.33287 -15.00512 -14.80215 -14.69001 -14.47776 -14.38778 -14.07744 -13.82410 -13.53976 -13.10224 -13.01051 -12.81441 -12.71036 -12.57120 -12.18340 -11.92271 -11.70331 -11.48566 -11.06559 -11.02466 -11.00899 -10.82277 -10.72759 -10.18596 -9.81274 -9.64277 -9.42317 -9.07000 -9.00864 -8.89968 -8.22904 -6.49532 -6.21103 -3.91776 2.04543 2.83425 2.98580 3.09606 3.22547 3.26350 3.28255 3.31574 3.64592 3.67018 3.90177 3.93129 4.10291 4.20674 4.30384 4.45518 4.49341 4.71315 4.85283 4.96514 5.09339 5.13897 5.15508 5.24328 5.29671 5.42400 5.44784 5.53008 5.61198 5.66701 5.81206 5.88722 5.91016 6.12586 6.23654 6.42121 6.50181 6.55075 7.30368 7.59627 7.63472 7.72479 8.35525 8.59778 9.24015 10.86313 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.002350 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.144358 B =11912.064300 C =12229.174055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.512 6.512 13 N -0.740 5.740 14 C 0.103 3.897 15 C 0.101 3.899 16 O -0.527 6.527 17 C -0.032 4.032 18 N -0.442 5.442 19 C 0.011 3.989 20 H 0.121 0.879 21 C -0.120 4.120 22 C 0.098 3.902 23 N -0.730 5.730 24 C 0.493 3.507 25 O -0.520 6.520 26 C 0.013 3.987 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.392 0.608 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.377 0.623 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.412 0.588 41 H 0.101 0.899 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.876 -25.978 -7.872 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.385 6.385 13 N -0.396 5.396 14 C -0.022 4.022 15 C 0.059 3.941 16 O -0.333 6.333 17 C -0.161 4.161 18 N -0.164 5.164 19 C -0.102 4.102 20 H 0.138 0.862 21 C -0.158 4.158 22 C -0.027 4.027 23 N -0.387 5.387 24 C 0.278 3.722 25 O -0.395 6.395 26 C -0.116 4.116 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.226 0.774 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.226 0.774 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.251 0.749 41 H 0.119 0.881 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.778 -26.938 -7.213 30.272 hybrid contribution 1.615 2.322 -0.966 2.989 sum 13.393 -24.616 -8.179 29.193 Atomic orbital electron populations 1.70022 1.05956 1.27459 1.46838 1.25000 0.95033 0.99044 0.94556 0.86161 0.79407 0.81562 0.78321 1.20296 1.20745 1.19689 1.22864 0.94897 0.91651 1.58954 0.90927 1.85441 1.04850 0.96290 1.96707 1.23529 1.06628 0.95290 1.04914 1.20312 0.86520 0.86167 0.75146 1.90720 1.15305 1.85496 1.47023 1.45908 1.09598 1.05526 1.78520 1.21899 0.95717 0.80483 1.04092 1.22737 0.88854 0.95590 0.86930 1.86561 1.62178 1.32816 1.51712 1.24956 1.02408 0.90144 0.98563 1.68873 1.34370 1.05419 1.07779 1.23108 0.94461 1.00072 0.92549 0.86156 1.22612 0.96740 1.04879 0.91577 1.22151 0.85196 0.96963 0.98402 1.46315 1.27147 1.56594 1.08604 1.21721 0.86694 0.79773 0.84046 1.90803 1.29458 1.45005 1.74282 1.24340 0.95787 0.93336 0.98117 0.92176 0.89138 0.89250 0.77402 0.90530 0.89508 0.77425 0.89291 0.88682 0.89263 0.88497 0.89884 0.90663 0.74940 0.88076 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.53 10.18 7.85 -10.98 -0.09 10.09 16 12 O -0.51 -12.09 15.86 5.55 0.09 -12.01 16 13 N -0.74 -10.08 5.34 -60.29 -0.32 -10.41 16 14 C 0.10 1.37 5.28 -4.04 -0.02 1.34 16 15 C 0.10 1.07 1.52 -89.69 -0.14 0.94 16 16 O -0.53 -5.52 13.50 -35.23 -0.48 -5.99 16 17 C -0.03 -0.31 6.64 -2.77 -0.02 -0.32 16 18 N -0.44 -3.98 6.22 -230.23 -1.43 -5.41 16 19 C 0.01 0.08 3.10 -67.73 -0.21 -0.13 16 20 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.12 -0.51 6.78 -25.10 -0.17 -0.68 16 22 C 0.10 0.32 7.78 -3.12 -0.02 0.30 16 23 N -0.73 -4.59 6.24 -59.20 -0.37 -4.96 16 24 C 0.49 4.54 5.94 -10.86 -0.06 4.48 16 25 O -0.52 -6.86 13.97 5.56 0.08 -6.78 16 26 C 0.01 0.13 7.06 -2.77 -0.02 0.11 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.39 3.95 7.31 -40.82 -0.30 3.65 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.34 7.62 -51.93 -0.40 0.94 16 33 H 0.38 2.87 7.61 45.56 0.35 3.21 16 34 H 0.09 0.99 5.09 -51.92 -0.26 0.72 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.44 7.84 -51.93 -0.41 0.03 16 37 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.41 2.30 8.96 -40.82 -0.37 1.94 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 1.23 5.69 -51.93 -0.30 0.93 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -37.93 358.40 -8.89 -46.83 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.03 Total: 6.12 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.33 Total: 0.22 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -1.39 Total: -46.41 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.31 Total: -24.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.93 -8.89 -46.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754763148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.251 kcal (2) G-P(sol) polarization free energy of solvation -37.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds