Wall clock time and date at job start Tue Mar 31 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00505 * 3 2 1 5 5 H 1.48500 * 109.46795 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00078 * 3 2 1 7 7 C 1.38798 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99946 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.72922 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 13 11 10 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 O 1.42893 * 112.94147 * 55.33133 * 15 14 13 17 17 C 1.53936 * 113.73169 * 283.76039 * 15 14 13 18 18 N 1.48183 * 86.10327 * 221.96065 * 17 15 14 19 19 C 1.46903 * 111.07238 * 137.52042 * 18 17 15 20 20 H 1.09001 * 110.43339 * 314.87101 * 19 18 17 21 21 C 1.54631 * 110.48422 * 77.40791 * 19 18 17 22 22 C 1.54483 * 101.76480 * 93.88155 * 21 19 18 23 23 N 1.46767 * 105.47071 * 25.41712 * 22 21 19 24 24 C 1.34744 * 111.35382 * 343.01447 * 23 22 21 25 25 O 1.21271 * 125.12359 * 180.38960 * 24 23 22 26 26 C 1.47961 * 90.79939 * 24.60203 * 18 17 15 27 27 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46816 * 60.00508 * 10 9 7 29 29 H 1.08993 * 109.47387 * 300.00147 * 10 9 7 30 30 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 31 31 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 32 32 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 33 33 H 0.96695 * 114.00008 * 309.66171 * 16 15 14 34 34 H 1.09000 * 113.76038 * 336.24148 * 17 15 14 35 35 H 1.09001 * 113.75720 * 107.60362 * 17 15 14 36 36 H 1.09005 * 110.96678 * 212.00034 * 21 19 18 37 37 H 1.09002 * 110.97152 * 335.72138 * 21 19 18 38 38 H 1.08999 * 110.24554 * 144.41718 * 22 21 19 39 39 H 1.08995 * 110.24235 * 266.41396 * 22 21 19 40 40 H 0.97001 * 124.34618 * 162.97210 * 23 22 21 41 41 H 1.09002 * 113.76086 * 221.08547 * 26 18 17 42 42 H 1.08999 * 113.76005 * 89.72136 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5023 0.0045 13 7 2.8441 -6.3432 -0.0022 14 6 2.3303 -7.7151 0.0042 15 6 3.5024 -8.6986 0.0028 16 8 4.4144 -8.4797 1.0809 17 6 4.1872 -8.8444 -1.3681 18 7 4.2293 -10.2972 -1.0795 19 6 3.8698 -11.0825 -2.2678 20 1 2.9907 -10.6580 -2.7527 21 6 5.0572 -11.1424 -3.2565 22 6 5.7430 -12.4641 -2.8454 23 7 4.6872 -13.2790 -2.2328 24 6 3.6220 -12.5270 -1.8929 25 8 2.6136 -12.9442 -1.3641 26 6 3.0771 -10.1690 -0.1601 27 1 -0.4850 0.8401 0.0004 28 1 3.1251 -3.7318 0.8875 29 1 3.1238 -3.7310 -0.8924 30 1 3.8009 -6.1836 -0.0068 31 1 1.7256 -7.8725 0.8973 32 1 1.7179 -7.8779 -0.8826 33 1 4.7067 -7.5622 1.1686 34 1 3.5457 -8.5823 -2.2095 35 1 5.1705 -8.3770 -1.4198 36 1 4.7048 -11.1897 -4.2869 37 1 5.7266 -10.2940 -3.1140 38 1 6.1471 -12.9683 -3.7232 39 1 6.5358 -12.2690 -2.1233 40 1 4.7477 -14.2367 -2.0912 41 1 3.1752 -10.7581 0.7517 42 1 2.1103 -10.2952 -0.6474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754763149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:25 Heat of formation + Delta-G solvation = -73.519010 kcal Electronic energy + Delta-G solvation = -25327.922537 eV Core-core repulsion = 21435.659167 eV Total energy + Delta-G solvation = -3892.263371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.55745 -39.99861 -38.92017 -36.85183 -35.94834 -34.19940 -32.46010 -31.78728 -30.11693 -28.69181 -27.16411 -26.57489 -25.50850 -24.03424 -22.15340 -20.63068 -20.51730 -20.30408 -18.18641 -17.83151 -17.30917 -17.20246 -16.49760 -16.00800 -15.74038 -15.37236 -15.21184 -14.83390 -14.81339 -14.57604 -14.18384 -13.97194 -13.77959 -13.68189 -13.45181 -13.17988 -12.95687 -12.70452 -12.59915 -12.32514 -12.05109 -11.84281 -11.68402 -11.14660 -11.08866 -11.05808 -10.78499 -10.34032 -10.16954 -9.85607 -9.59414 -9.52673 -9.32776 -9.11434 -9.04669 -8.28222 -6.54300 -6.24852 -3.96008 2.06507 2.87878 2.88904 2.98724 3.20088 3.24140 3.28293 3.31650 3.53710 3.63540 3.75807 3.94977 3.96349 4.17054 4.29921 4.37793 4.52824 4.75164 4.89099 4.90149 5.02315 5.05651 5.10052 5.10505 5.24201 5.30406 5.39176 5.41720 5.52607 5.54114 5.67896 5.73857 5.81923 6.06642 6.32775 6.34056 6.42094 6.52765 7.21502 7.51217 7.56515 7.79915 8.31798 8.48491 9.20465 10.82524 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.030266 B = 0.001998 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.905211 B =14013.245650 C =14287.543324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.740 5.740 14 C 0.102 3.898 15 C 0.096 3.904 16 O -0.525 6.525 17 C -0.019 4.019 18 N -0.450 5.450 19 C 0.009 3.991 20 H 0.086 0.914 21 C -0.125 4.125 22 C 0.108 3.892 23 N -0.728 5.728 24 C 0.532 3.468 25 O -0.526 6.526 26 C 0.026 3.974 27 H 0.269 0.731 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.395 0.605 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.379 0.621 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.411 0.589 41 H 0.103 0.897 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.331 -23.876 -6.652 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.386 6.386 13 N -0.396 5.396 14 C -0.023 4.023 15 C 0.054 3.946 16 O -0.330 6.330 17 C -0.148 4.148 18 N -0.174 5.174 19 C -0.104 4.104 20 H 0.104 0.896 21 C -0.163 4.163 22 C -0.017 4.017 23 N -0.384 5.384 24 C 0.316 3.684 25 O -0.401 6.401 26 C -0.102 4.102 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.228 0.772 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.227 0.773 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.249 0.751 41 H 0.121 0.879 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.118 -25.176 -6.091 29.034 hybrid contribution 1.897 1.789 -0.501 2.655 sum 15.015 -23.386 -6.592 28.562 Atomic orbital electron populations 1.70018 1.05957 1.27509 1.46739 1.25004 0.95043 0.99074 0.94510 0.86157 0.79405 0.81527 0.78344 1.20270 1.20743 1.19681 1.22855 0.94892 0.91594 1.59087 0.90892 1.85441 1.04778 0.96371 1.96728 1.23529 1.06703 0.95175 1.04994 1.20342 0.86482 0.86208 0.75003 1.90724 1.15331 1.85507 1.47014 1.45913 1.09772 1.05299 1.78630 1.21889 0.95683 0.80907 1.03806 1.22874 0.89251 0.95431 0.87088 1.86585 1.63355 1.32902 1.50149 1.24830 1.02720 0.89466 0.97779 1.68723 1.34570 1.05492 1.08638 1.23042 0.99408 0.93803 0.94109 0.89618 1.22635 0.96836 0.98440 0.98393 1.22021 0.90423 0.91211 0.98038 1.46199 1.17818 1.11157 1.63232 1.20616 0.82411 0.88360 0.76972 1.90773 1.28784 1.78030 1.42483 1.24073 0.94170 0.93286 0.98696 0.92145 0.89086 0.89160 0.77150 0.90179 0.90352 0.77271 0.89649 0.88094 0.89539 0.88446 0.90286 0.90481 0.75072 0.87865 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.90 6.16 36.00 0.22 -2.68 16 11 C 0.53 9.25 7.85 -10.98 -0.09 9.17 16 12 O -0.51 -11.19 15.86 5.56 0.09 -11.10 16 13 N -0.74 -8.51 5.33 -60.30 -0.32 -8.83 16 14 C 0.10 1.09 5.25 -4.04 -0.02 1.07 16 15 C 0.10 0.83 1.48 -89.68 -0.13 0.70 16 16 O -0.52 -4.85 13.50 -35.23 -0.48 -5.32 16 17 C -0.02 -0.13 6.88 -2.64 -0.02 -0.15 16 18 N -0.45 -3.72 5.99 -229.98 -1.38 -5.09 16 19 C 0.01 0.06 2.21 -67.72 -0.15 -0.09 16 20 H 0.09 0.62 7.77 -51.93 -0.40 0.22 16 21 C -0.13 -0.54 6.75 -25.10 -0.17 -0.71 16 22 C 0.11 0.43 7.78 -3.12 -0.02 0.40 16 23 N -0.73 -4.68 6.25 -59.12 -0.37 -5.05 16 24 C 0.53 5.15 7.64 -10.71 -0.08 5.07 16 25 O -0.53 -7.19 17.65 5.57 0.10 -7.09 16 26 C 0.03 0.25 6.58 -2.76 -0.02 0.23 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 29 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.39 3.18 7.42 -40.82 -0.30 2.88 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.38 2.35 7.73 45.56 0.35 2.71 16 34 H 0.09 0.55 7.66 -51.93 -0.40 0.15 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.37 7.71 -51.93 -0.40 -0.03 16 38 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.41 2.07 8.96 -40.82 -0.37 1.70 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 0.88 7.83 -51.93 -0.41 0.47 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -37.72 367.27 -8.88 -46.60 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.27 Total: 2.91 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -0.28 Total: 0.31 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -1.33 Total: -44.08 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.29 Total: -23.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.72 -8.88 -46.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754763149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.921 kcal (2) G-P(sol) polarization free energy of solvation -37.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds