Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34475 * 126.16651 * 2 1 4 4 C 1.30253 * 108.70491 * 180.02562 * 3 2 1 5 5 O 1.33971 * 108.75638 * 359.73450 * 4 3 2 6 6 C 1.34329 * 126.16323 * 180.02562 * 2 1 3 7 7 C 1.50698 * 126.44587 * 0.02562 * 6 2 1 8 8 N 1.46905 * 109.46918 * 89.99672 * 7 6 2 9 9 C 1.46904 * 110.99601 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47225 * 35.00520 * 9 8 7 11 11 C 1.52997 * 109.47449 * 275.00171 * 9 8 7 12 12 O 1.42898 * 109.47319 * 295.00414 * 11 9 8 13 13 C 1.53007 * 109.46495 * 155.00158 * 9 8 7 14 14 N 1.46494 * 109.47545 * 305.00188 * 13 9 8 15 15 C 1.34776 * 120.00130 * 180.02562 * 14 13 9 16 16 O 1.21273 * 120.00018 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99797 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47010 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99830 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00541 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99665 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00095 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99887 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46910 * 89.99655 * 23 21 19 25 25 H 1.48496 * 109.46830 * 209.99860 * 23 21 19 26 26 H 1.48495 * 109.47045 * 329.99614 * 23 21 19 27 27 H 1.08997 * 109.46821 * 269.99991 * 1 2 3 28 28 H 1.09006 * 109.46775 * 29.99387 * 1 2 3 29 29 H 1.08998 * 109.47081 * 149.99878 * 1 2 3 30 30 H 1.07998 * 125.62538 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.46820 * 330.00094 * 7 6 2 32 32 H 1.08997 * 109.47195 * 209.99813 * 7 6 2 33 33 H 1.00897 * 111.00468 * 303.95643 * 8 7 6 34 34 H 1.09002 * 109.47153 * 175.00107 * 11 9 8 35 35 H 1.09001 * 109.46832 * 55.00298 * 11 9 8 36 36 H 0.96701 * 113.99881 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.47221 * 65.00705 * 13 9 8 38 38 H 1.09005 * 109.46665 * 184.99939 * 13 9 8 39 39 H 0.97003 * 119.99396 * 359.97438 * 14 13 9 40 40 H 1.08998 * 109.47149 * 299.99692 * 17 15 14 41 41 H 1.09005 * 109.47530 * 60.00018 * 17 15 14 42 42 H 0.97001 * 119.99990 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6948 -0.0006 5 8 3.5734 -0.6446 0.0050 6 6 2.2997 -1.0845 -0.0005 7 6 1.8493 -2.5226 -0.0017 8 7 1.7034 -2.9888 -1.3871 9 6 1.2650 -4.3904 -1.4274 10 1 0.5872 -4.5831 -0.5959 11 6 2.4833 -5.3092 -1.3158 12 8 3.3146 -5.1399 -2.4657 13 6 0.5417 -4.6606 -2.7483 14 7 -0.5534 -3.7011 -2.9107 15 6 -1.3342 -3.7491 -4.0081 16 8 -1.1300 -4.5862 -4.8615 17 6 -2.4603 -2.7616 -4.1753 18 16 -3.3161 -3.0814 -5.7379 19 6 -4.5465 -1.8217 -5.6762 20 1 -4.5895 -1.1496 -4.8319 21 6 -5.4605 -1.6930 -6.7129 22 7 -5.4078 -2.5118 -7.7422 23 14 -6.7645 -0.3570 -6.6479 24 1 -6.2413 0.8769 -7.2874 25 1 -7.9777 -0.8139 -7.3723 26 1 -7.1112 -0.0721 -5.2324 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 4.4066 1.3434 -0.0011 31 1 0.8912 -2.6036 0.5117 32 1 2.5898 -3.1357 0.5119 33 1 1.0702 -2.3966 -1.9032 34 1 2.1521 -6.3460 -1.2563 35 1 3.0482 -5.0562 -0.4186 36 1 4.1076 -5.6933 -2.4626 37 1 1.2436 -4.5542 -3.5753 38 1 0.1392 -5.6736 -2.7415 39 1 -0.7169 -3.0318 -2.2278 40 1 -3.1621 -2.8674 -3.3481 41 1 -2.0575 -1.7488 -4.1828 42 1 -6.0464 -2.4217 -8.4668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755624097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -57.827527 kcal Electronic energy + Delta-G solvation = -25362.475950 eV Core-core repulsion = 21470.893013 eV Total energy + Delta-G solvation = -3891.582937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.62086 -39.58090 -38.15043 -36.11176 -35.41253 -34.31372 -32.42812 -32.28056 -30.44876 -29.09644 -27.87881 -25.84500 -25.44500 -24.91709 -22.50081 -21.08215 -20.93439 -20.46486 -18.05958 -17.82025 -17.46623 -17.00048 -16.78622 -16.27735 -15.65769 -15.60279 -14.89919 -14.82300 -14.80108 -14.79354 -14.21770 -13.92983 -13.66198 -13.58422 -13.46313 -13.14723 -12.93629 -12.61989 -12.55020 -12.33444 -12.08369 -11.72291 -11.36572 -11.28410 -11.06020 -11.02402 -10.77527 -10.76001 -10.24559 -9.81896 -9.43968 -9.12585 -9.07053 -8.94482 -8.86508 -8.23911 -6.50053 -6.21500 -3.92177 1.10240 2.35043 2.44576 2.98020 3.07271 3.22868 3.27708 3.31321 3.59646 3.72846 3.86052 3.95163 4.20435 4.32919 4.44403 4.50359 4.64855 4.75470 4.88976 5.00700 5.09138 5.12071 5.13719 5.21518 5.25210 5.27664 5.38158 5.51754 5.63411 5.65922 5.76921 5.86399 5.98200 6.03860 6.11204 6.42516 6.51323 6.82393 7.41796 7.44001 7.58266 7.60292 8.35212 8.56829 9.23821 10.85907 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.002839 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.670174 B = 9859.016530 C =11861.544487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.006 4.006 3 N -0.486 5.486 4 C 0.173 3.827 5 O -0.195 6.195 6 C -0.042 4.042 7 C 0.142 3.858 8 N -0.673 5.673 9 C 0.079 3.921 10 H 0.067 0.933 11 C 0.091 3.909 12 O -0.554 6.554 13 C 0.122 3.878 14 N -0.744 5.744 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.249 0.751 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.350 0.650 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.375 0.625 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.390 0.610 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.328 -0.772 21.478 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 N -0.215 5.215 4 C -0.053 4.053 5 O -0.081 6.081 6 C -0.095 4.095 7 C 0.013 3.987 8 N -0.308 5.308 9 C -0.031 4.031 10 H 0.085 0.915 11 C 0.012 3.988 12 O -0.358 6.358 13 C -0.002 4.002 14 N -0.400 5.400 15 C 0.320 3.680 16 O -0.385 6.385 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.172 0.828 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.221 0.779 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.224 0.776 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.621 -1.384 19.627 27.090 hybrid contribution -1.189 1.384 1.843 2.594 sum 17.432 0.000 21.470 27.656 Atomic orbital electron populations 1.20162 0.86403 1.03699 1.02991 1.21588 0.98025 0.87654 1.05349 1.70371 1.01425 1.31697 1.17971 1.28033 0.97573 0.79361 1.00368 1.84440 1.29972 1.24476 1.69178 1.22886 0.81020 0.97164 1.08443 1.20325 1.00377 0.86789 0.91231 1.60391 1.56108 1.02683 1.11663 1.21905 0.94684 0.88558 0.97938 0.91526 1.22056 0.91212 0.96896 0.88648 1.86618 1.38307 1.68205 1.42665 1.21392 0.88456 0.93225 0.97163 1.46053 1.33807 1.36434 1.23700 1.20287 0.82227 0.84922 0.80611 1.90714 1.69927 1.37019 1.40820 1.23540 0.98718 1.00577 1.07648 1.85423 1.35595 1.45106 1.17074 1.22865 1.17405 1.18708 1.09434 0.90925 1.24994 0.97405 0.96639 0.94532 1.70019 1.35958 1.36059 1.08234 0.86169 0.80115 0.80893 0.78335 1.20240 1.20762 1.19693 0.90523 0.89951 0.91119 0.73481 0.91473 0.88977 0.82843 0.93056 0.93481 0.77869 0.89278 0.90828 0.77632 0.89270 0.89189 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.05 36.01 0.36 -0.24 16 2 C -0.01 -0.06 7.11 -82.81 -0.59 -0.65 16 3 N -0.49 -5.46 11.29 -11.18 -0.13 -5.59 16 4 C 0.17 1.49 13.23 52.09 0.69 2.18 16 5 O -0.20 -1.95 10.78 5.34 0.06 -1.89 16 6 C -0.04 -0.40 6.90 -35.69 -0.25 -0.64 16 7 C 0.14 1.01 5.64 -4.97 -0.03 0.99 16 8 N -0.67 -5.94 6.24 -107.99 -0.67 -6.62 16 9 C 0.08 0.63 2.60 -67.71 -0.18 0.46 16 10 H 0.07 0.40 7.80 -51.93 -0.41 0.00 16 11 C 0.09 0.64 6.80 37.16 0.25 0.89 16 12 O -0.55 -5.04 12.64 -35.23 -0.45 -5.49 16 13 C 0.12 1.42 5.20 -4.04 -0.02 1.39 16 14 N -0.74 -9.53 4.99 -60.30 -0.30 -9.83 16 15 C 0.53 9.83 7.85 -10.99 -0.09 9.75 16 16 O -0.51 -11.65 15.86 5.56 0.09 -11.56 16 17 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 30 H 0.25 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.07 0.35 7.71 -51.93 -0.40 -0.05 16 32 H 0.09 0.59 7.36 -51.93 -0.38 0.20 16 33 H 0.35 3.38 6.71 -39.29 -0.26 3.11 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.27 7.35 -51.93 -0.38 -0.11 16 36 H 0.38 1.79 9.12 45.56 0.42 2.20 16 37 H 0.09 1.29 7.39 -51.93 -0.38 0.91 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.39 3.78 7.37 -40.82 -0.30 3.48 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -38.79 374.61 -6.69 -45.48 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.01 Total: 4.37 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 0.58 Total: -1.65 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.37 Total: -47.50 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.30 Total: -18.93 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.79 -6.69 -45.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755624097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal (2) G-P(sol) polarization free energy of solvation -38.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds