Wall clock time and date at job start Tue Mar 31 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34472 * 126.16605 * 2 1 4 4 C 1.30258 * 108.70247 * 179.97438 * 3 2 1 5 5 O 1.33964 * 108.75916 * 359.97438 * 4 3 2 6 6 C 1.34327 * 126.16390 * 179.97438 * 2 1 3 7 7 C 1.50701 * 126.44653 * 0.06095 * 6 2 1 8 8 N 1.46901 * 109.46947 * 89.98297 * 7 6 2 9 9 C 1.46898 * 110.99819 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47428 * 324.99746 * 9 8 7 11 11 C 1.53006 * 109.47436 * 84.99892 * 9 8 7 12 12 O 1.42895 * 109.46910 * 64.99638 * 11 9 8 13 13 C 1.53003 * 109.47222 * 204.99901 * 9 8 7 14 14 N 1.46498 * 109.47307 * 54.99570 * 13 9 8 15 15 C 1.34766 * 120.00047 * 180.02562 * 14 13 9 16 16 O 1.21283 * 120.00471 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99962 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47352 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00286 * 179.97438 * 18 17 15 20 20 H 1.08008 * 120.00094 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00241 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99783 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99891 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46722 * 89.99517 * 23 21 19 25 25 H 1.48500 * 109.46981 * 209.99671 * 23 21 19 26 26 H 1.48495 * 109.47123 * 329.99860 * 23 21 19 27 27 H 1.08998 * 109.47326 * 270.02452 * 1 2 3 28 28 H 1.08994 * 109.47155 * 30.02965 * 1 2 3 29 29 H 1.09006 * 109.47022 * 150.02526 * 1 2 3 30 30 H 1.08000 * 125.61430 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47037 * 209.97802 * 7 6 2 32 32 H 1.09001 * 109.47192 * 329.98291 * 7 6 2 33 33 H 1.00900 * 110.99884 * 303.94768 * 8 7 6 34 34 H 1.08995 * 109.47252 * 185.00111 * 11 9 8 35 35 H 1.08998 * 109.46737 * 305.00229 * 11 9 8 36 36 H 0.96707 * 114.00176 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.47090 * 175.00296 * 13 9 8 38 38 H 1.09006 * 109.46892 * 294.99814 * 13 9 8 39 39 H 0.97001 * 119.99662 * 0.02562 * 14 13 9 40 40 H 1.09003 * 109.47026 * 299.99982 * 17 15 14 41 41 H 1.08993 * 109.47548 * 59.99804 * 17 15 14 42 42 H 0.97005 * 119.99991 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5734 -0.6446 0.0015 6 6 2.2997 -1.0845 0.0005 7 6 1.8493 -2.5226 -0.0002 8 7 1.7037 -2.9895 -1.3854 9 6 1.2643 -4.3906 -1.4252 10 1 1.7107 -4.9353 -0.5932 11 6 -0.2606 -4.4503 -1.3142 12 8 -0.8462 -3.8376 -2.4646 13 6 1.7048 -5.0260 -2.7455 14 7 3.1516 -4.8627 -2.9074 15 6 3.7658 -5.3471 -4.0047 16 8 3.1208 -5.9180 -4.8586 17 6 5.2543 -5.1797 -4.1709 18 16 5.7751 -5.9298 -5.7337 19 6 7.5043 -5.5971 -5.6715 20 1 7.9229 -5.0707 -4.8264 21 6 8.3287 -6.0124 -6.7081 22 7 9.6205 -5.7643 -6.6613 23 14 7.6048 -6.9235 -8.1694 24 1 7.2025 -5.9458 -9.2123 25 1 8.6210 -7.8518 -8.7267 26 1 6.4154 -7.6969 -7.7308 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5135 30 1 4.4065 1.3435 0.0011 31 1 2.5897 -3.1354 0.5139 32 1 0.8911 -2.6035 0.5131 33 1 1.0705 -2.3975 -1.9018 34 1 -0.5800 -5.4907 -1.2543 35 1 -0.5806 -3.9198 -0.4175 36 1 -1.8132 -3.8390 -2.4617 37 1 1.4574 -6.0875 -2.7383 38 1 1.1893 -4.5385 -3.5731 39 1 3.6675 -4.4058 -2.2247 40 1 5.5019 -4.1182 -4.1775 41 1 5.7695 -5.6677 -3.3437 42 1 10.1966 -6.0542 -7.3859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755624098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:06 Heat of formation + Delta-G solvation = -63.140189 kcal Electronic energy + Delta-G solvation = -25263.096083 eV Core-core repulsion = 21371.282771 eV Total energy + Delta-G solvation = -3891.813311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 9.88 seconds Orbital eigenvalues (eV) -43.63379 -39.47910 -38.36331 -36.12962 -35.44086 -34.30825 -32.39283 -32.30513 -30.48011 -29.14618 -27.81157 -25.78795 -25.49250 -25.02066 -22.53929 -21.30781 -21.07002 -20.23926 -18.18342 -17.77187 -17.45393 -17.02511 -16.46201 -16.30478 -16.08302 -15.47121 -15.02685 -14.93283 -14.81515 -14.75502 -14.36214 -13.80111 -13.68990 -13.59962 -13.50862 -13.09335 -12.98320 -12.74936 -12.64026 -12.32710 -12.18246 -11.84000 -11.53405 -11.31835 -11.20999 -10.96187 -10.82010 -10.58018 -10.51166 -9.80690 -9.40201 -9.16790 -8.95538 -8.88857 -8.74844 -8.42577 -6.84725 -6.23939 -3.94569 1.09315 2.32507 2.44164 2.86100 3.13652 3.35725 3.38770 3.53567 3.55315 3.78026 3.82320 3.90548 4.33797 4.38161 4.41754 4.43270 4.52833 4.58849 4.78741 4.84591 4.92413 4.99599 5.09723 5.13999 5.15204 5.16933 5.28701 5.45618 5.61100 5.62611 5.71744 5.87771 5.95237 5.99920 6.12781 6.38150 6.69719 6.87889 7.10351 7.40036 7.83580 7.99422 8.47154 8.66722 9.22573 10.85415 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.002643 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.685999 B =10593.159674 C =12188.715079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.009 4.009 3 N -0.489 5.489 4 C 0.178 3.822 5 O -0.192 6.192 6 C -0.040 4.040 7 C 0.142 3.858 8 N -0.675 5.675 9 C 0.079 3.921 10 H 0.099 0.901 11 C 0.047 3.953 12 O -0.565 6.565 13 C 0.138 3.862 14 N -0.724 5.724 15 C 0.529 3.471 16 O -0.526 6.526 17 C -0.122 4.122 18 S -0.143 6.143 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.882 5.882 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.359 0.641 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.383 0.617 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.403 0.597 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.089 8.669 19.785 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 N -0.218 5.218 4 C -0.049 4.049 5 O -0.077 6.077 6 C -0.094 4.094 7 C 0.013 3.987 8 N -0.309 5.309 9 C -0.032 4.032 10 H 0.117 0.883 11 C -0.034 4.034 12 O -0.370 6.370 13 C 0.013 3.987 14 N -0.378 5.378 15 C 0.315 3.685 16 O -0.401 6.401 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.519 5.519 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.266 0.734 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.180 0.820 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.230 0.770 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.238 0.762 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.842 8.220 18.050 29.503 hybrid contribution -0.106 0.120 1.124 1.135 sum -21.947 8.339 19.174 30.313 Atomic orbital electron populations 1.20111 0.86706 1.03393 1.02668 1.21529 0.97888 0.87773 1.05821 1.70364 1.01470 1.31656 1.18351 1.28070 0.97520 0.79379 0.99900 1.84469 1.29846 1.24478 1.68919 1.22896 0.81091 0.97183 1.08260 1.20295 1.00212 0.86918 0.91309 1.60461 1.55872 1.02967 1.11587 1.22010 0.91640 0.89815 0.99688 0.88298 1.22812 0.94639 0.97758 0.88146 1.86509 1.25241 1.82089 1.43195 1.21111 0.81702 0.99564 0.96329 1.45742 1.08138 1.60448 1.23443 1.20227 0.89435 0.77829 0.81035 1.90689 1.66708 1.41440 1.41284 1.23256 0.94009 1.05497 1.04485 1.84754 1.09024 1.75239 1.22702 1.22336 0.89868 1.43553 1.10937 0.89435 1.24717 0.94153 0.94719 0.97789 1.69943 1.03428 1.45338 1.33188 0.86726 0.80762 0.81124 0.83190 1.19233 1.20026 1.15898 0.90833 0.90355 0.91074 0.73397 0.88729 0.91758 0.82036 0.92387 0.93337 0.77000 0.91460 0.90491 0.76207 0.88600 0.88674 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.05 36.01 0.36 -0.09 16 2 C -0.01 -0.09 7.11 -82.81 -0.59 -0.68 16 3 N -0.49 -5.23 11.29 -11.18 -0.13 -5.36 16 4 C 0.18 1.55 13.23 52.10 0.69 2.24 16 5 O -0.19 -1.94 10.78 5.36 0.06 -1.88 16 6 C -0.04 -0.36 6.90 -35.69 -0.25 -0.61 16 7 C 0.14 0.90 5.64 -4.97 -0.03 0.87 16 8 N -0.68 -5.20 5.68 -107.99 -0.61 -5.81 16 9 C 0.08 0.55 2.57 -67.71 -0.17 0.37 16 10 H 0.10 0.54 7.80 -51.93 -0.41 0.13 16 11 C 0.05 0.23 6.72 37.16 0.25 0.48 16 12 O -0.56 -3.53 12.05 -35.23 -0.42 -3.95 16 13 C 0.14 1.56 5.26 -4.04 -0.02 1.54 16 14 N -0.72 -9.81 5.39 -60.29 -0.32 -10.13 16 15 C 0.53 9.90 7.85 -10.99 -0.09 9.82 16 16 O -0.53 -11.84 15.86 5.56 0.09 -11.75 16 17 C -0.12 -2.48 6.16 36.01 0.22 -2.25 16 18 S -0.14 -3.76 18.55 -107.50 -1.99 -5.75 16 19 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 20 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 21 C 0.09 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -27.08 13.97 55.49 0.78 -26.31 16 23 Si 0.86 22.23 27.74 -169.99 -4.72 17.52 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.34 7.79 -51.93 -0.40 -0.06 16 30 H 0.25 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.09 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.06 0.27 7.01 -51.93 -0.36 -0.09 16 33 H 0.36 3.08 7.93 -39.29 -0.31 2.77 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.05 0.15 7.35 -51.93 -0.38 -0.23 16 36 H 0.38 0.82 9.12 45.56 0.42 1.23 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.05 7.39 -51.93 -0.38 0.67 16 39 H 0.40 4.70 8.14 -40.82 -0.33 4.37 16 40 H 0.10 1.86 8.14 -51.91 -0.42 1.44 16 41 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -38.66 373.11 -6.18 -44.84 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.12 Total: 3.58 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 0.59 Total: -0.60 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.29 Total: -47.62 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.28 Total: -17.59 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.72 Total: 17.52 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.66 -6.18 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755624098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.301 kcal (2) G-P(sol) polarization free energy of solvation -38.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.88 seconds