Wall clock time and date at job start Tue Mar 31 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.38588 * 2 1 4 4 C 1.54384 * 110.34396 * 237.77190 * 2 1 3 5 5 N 1.48141 * 104.61841 * 217.26001 * 4 2 1 6 6 C 1.34773 * 127.83857 * 219.58494 * 5 4 2 7 7 O 1.21351 * 119.99869 * 0.02562 * 6 5 4 8 8 C 1.49456 * 120.00104 * 180.02562 * 6 5 4 9 9 N 1.34773 * 120.00104 * 180.02562 * 8 6 5 10 10 O 1.21342 * 119.99794 * 359.97438 * 8 6 5 11 11 C 1.48150 * 104.32380 * 39.58435 * 5 4 2 12 12 C 1.54286 * 110.34382 * 122.23233 * 2 1 3 13 13 H 1.08997 * 110.34298 * 237.74238 * 12 2 1 14 14 N 1.46497 * 110.34252 * 359.89676 * 12 2 1 15 15 C 1.34781 * 119.99746 * 204.99899 * 14 12 2 16 16 O 1.21282 * 120.00189 * 0.02562 * 15 14 12 17 17 C 1.50707 * 119.99813 * 179.97438 * 15 14 12 18 18 S 1.80998 * 109.47039 * 180.02562 * 17 15 14 19 19 C 1.76194 * 99.99928 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00140 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.00196 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99735 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00375 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46895 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47118 * 119.99891 * 23 21 19 26 26 H 1.48497 * 109.47156 * 239.99865 * 23 21 19 27 27 H 1.09004 * 109.46776 * 297.76406 * 1 2 3 28 28 H 1.08991 * 109.47640 * 57.76502 * 1 2 3 29 29 H 1.09000 * 109.47101 * 177.76876 * 1 2 3 30 30 H 1.08995 * 109.46926 * 182.23164 * 3 2 1 31 31 H 1.08996 * 109.47237 * 302.23241 * 3 2 1 32 32 H 1.09000 * 109.46849 * 62.23270 * 3 2 1 33 33 H 1.09006 * 110.40310 * 336.04666 * 4 2 1 34 34 H 1.09007 * 110.40957 * 98.47353 * 4 2 1 35 35 H 0.97005 * 120.00104 * 359.97438 * 9 8 6 36 36 H 0.96998 * 120.00157 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.40703 * 201.63107 * 11 5 4 38 38 H 1.08996 * 110.40508 * 79.19821 * 11 5 4 39 39 H 0.96998 * 119.99978 * 24.99654 * 14 12 2 40 40 H 1.09000 * 109.47109 * 300.00153 * 17 15 14 41 41 H 1.08993 * 109.46652 * 59.99913 * 17 15 14 42 42 H 0.96996 * 120.00436 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0667 -0.7720 -1.2245 5 7 3.2664 -1.4815 -0.7227 6 6 4.4424 -1.6662 -1.3546 7 8 4.6066 -1.2233 -2.4725 8 6 5.5443 -2.4163 -0.6787 9 7 6.7205 -2.6005 -1.3104 10 8 5.3802 -2.8587 0.4392 11 6 2.8802 -1.9421 0.6314 12 6 2.0664 -0.7716 1.2237 13 1 2.7096 -0.1289 1.8248 14 7 0.9555 -1.2788 2.0329 15 6 1.1351 -1.5232 3.3461 16 8 2.2161 -1.3226 3.8581 17 6 -0.0079 -2.0445 4.1787 18 16 0.5440 -2.2689 5.8878 19 6 -0.9453 -2.8681 6.6140 20 1 -1.8306 -2.9905 6.0077 21 6 -0.9805 -3.1839 7.9652 22 7 0.0986 -3.0352 8.7041 23 14 -2.5593 -3.8198 8.7350 24 1 -3.6196 -3.8964 7.6982 25 1 -2.3238 -5.1719 9.3021 26 1 -2.9892 -2.8975 9.8164 27 1 -0.3633 0.4787 0.9094 28 1 -0.3634 0.5481 -0.8692 29 1 -0.3633 -1.0269 -0.0400 30 1 3.1521 1.4170 -0.0400 31 1 1.6758 1.9657 -0.8692 32 1 1.7408 1.9415 0.9093 33 1 1.3234 -1.4860 -1.5793 34 1 2.3401 -0.0793 -2.0206 35 1 6.8518 -2.2465 -2.2040 36 1 7.4357 -3.0871 -0.8716 37 1 3.7673 -2.1324 1.2355 38 1 2.2641 -2.8389 0.5664 39 1 0.0908 -1.4388 1.6235 40 1 -0.8309 -1.3302 4.1538 41 1 -0.3439 -3.0001 3.7765 42 1 0.0740 -3.2555 9.6484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756172649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:36 Heat of formation + Delta-G solvation = -93.387812 kcal Electronic energy + Delta-G solvation = -26035.889498 eV Core-core repulsion = 22142.764551 eV Total energy + Delta-G solvation = -3893.124947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.23284 -39.97224 -38.65492 -37.96618 -34.81704 -33.82351 -33.29179 -32.42693 -30.08018 -28.27350 -27.76736 -27.36554 -25.48484 -24.50872 -23.04508 -20.48878 -20.16816 -19.58116 -18.22089 -17.88966 -17.35284 -16.75004 -16.70706 -16.25459 -15.78122 -15.34439 -15.02829 -14.81192 -14.77493 -14.51591 -14.06556 -13.83845 -13.77928 -13.46672 -13.13095 -12.87096 -12.62624 -12.55488 -12.32294 -12.15125 -11.99204 -11.73289 -11.30734 -11.17634 -11.07067 -11.01883 -10.85608 -10.74702 -10.22776 -9.92782 -9.80588 -9.42379 -9.27622 -9.07597 -8.88418 -8.22823 -6.49688 -6.21701 -3.92080 1.10741 2.00530 2.88761 2.97242 3.04762 3.21531 3.25253 3.30442 3.38893 3.71403 4.01749 4.20182 4.21677 4.26774 4.43306 4.79970 4.90048 5.06334 5.13504 5.13831 5.16370 5.28640 5.33699 5.45648 5.52334 5.54907 5.57039 5.68483 5.80340 5.84091 5.87181 5.88338 6.02311 6.12570 6.25939 6.57339 6.60468 6.95255 7.36925 7.59761 7.64722 7.70432 8.35352 8.57888 9.23769 10.85732 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.002660 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.196063 B =10524.737296 C =11514.664852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.112 3.888 5 N -0.590 5.590 6 C 0.528 3.472 7 O -0.527 6.527 8 C 0.513 3.487 9 N -0.824 5.824 10 O -0.505 6.505 11 C 0.075 3.925 12 C 0.142 3.858 13 H 0.105 0.895 14 N -0.731 5.731 15 C 0.531 3.469 16 O -0.511 6.511 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.412 0.588 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 5.065 -24.522 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.010 4.010 5 N -0.324 5.324 6 C 0.311 3.689 7 O -0.404 6.404 8 C 0.292 3.708 9 N -0.390 5.390 10 O -0.379 6.379 11 C -0.049 4.049 12 C 0.035 3.965 13 H 0.123 0.877 14 N -0.389 5.389 15 C 0.318 3.682 16 O -0.385 6.385 17 C -0.304 4.304 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.243 0.757 36 H 0.245 0.755 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.239 0.761 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.985 5.380 -23.398 25.004 hybrid contribution -2.296 -0.855 -0.521 2.505 sum 4.689 4.525 -23.919 24.791 Atomic orbital electron populations 1.21847 0.92770 1.02269 1.03290 1.21790 0.96807 0.96306 0.93998 1.21853 1.01173 0.93775 1.02601 1.22649 0.85790 0.95810 0.96751 1.48634 1.11918 1.53473 1.18328 1.19648 0.82343 0.81328 0.85590 1.90763 1.80793 1.50256 1.18538 1.20031 0.84107 0.80720 0.85982 1.43503 1.14884 1.58788 1.21841 1.90821 1.80781 1.48086 1.18232 1.23469 1.02316 0.97195 0.81895 1.21831 0.88907 0.94401 0.91365 0.87680 1.46252 1.14139 1.69266 1.09212 1.20395 0.89808 0.76674 0.81366 1.90722 1.26630 1.49717 1.71381 1.23530 0.99412 1.03551 1.03910 1.85437 1.17914 1.85510 0.94356 1.22902 0.97673 1.50710 0.97029 0.90890 1.24997 0.97350 0.95171 0.96111 1.70026 1.27630 1.45491 1.07091 0.86118 0.81828 0.78516 0.79033 1.19634 1.20583 1.20583 0.90909 0.91559 0.91911 0.92330 0.91936 0.91616 0.90060 0.89104 0.75711 0.75509 0.86070 0.90051 0.76137 0.89200 0.89185 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 7.12 37.16 0.26 -0.65 16 2 C -0.09 -0.71 1.03 -153.11 -0.16 -0.87 16 3 C -0.14 -1.08 8.24 37.16 0.31 -0.78 16 4 C 0.11 0.93 6.14 -2.41 -0.01 0.91 16 5 N -0.59 -6.28 3.32 -169.81 -0.56 -6.84 16 6 C 0.53 5.98 7.98 -11.58 -0.09 5.89 16 7 O -0.53 -6.51 16.74 5.50 0.09 -6.42 16 8 C 0.51 5.57 8.14 -11.58 -0.09 5.47 16 9 N -0.82 -5.56 8.87 30.90 0.27 -5.28 16 10 O -0.51 -7.12 14.61 5.50 0.08 -7.04 16 11 C 0.07 0.89 6.32 -2.41 -0.02 0.88 16 12 C 0.14 1.62 3.04 -66.53 -0.20 1.42 16 13 H 0.11 1.44 7.13 -51.93 -0.37 1.07 16 14 N -0.73 -9.00 4.53 -52.45 -0.24 -9.24 16 15 C 0.53 9.46 7.85 -10.98 -0.09 9.37 16 16 O -0.51 -11.27 15.51 5.56 0.09 -11.19 16 17 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.53 -15.08 9.50 30.94 0.29 -14.78 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 6.94 -51.93 -0.36 -0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.57 7.83 -51.93 -0.41 0.16 16 34 H 0.09 0.74 7.60 -51.93 -0.39 0.35 16 35 H 0.41 2.08 8.30 -40.82 -0.34 1.74 16 36 H 0.41 2.04 8.93 -40.82 -0.36 1.67 16 37 H 0.12 1.78 5.48 -51.93 -0.28 1.50 16 38 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 39 H 0.40 3.78 5.92 -40.82 -0.24 3.54 16 40 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -36.56 364.15 -6.62 -43.18 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.66 Total: 4.13 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.33 Total: 6.07 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.21 Total: -46.69 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.26 Total: -24.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.56 -6.62 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756172649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.210 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds