Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86793 * 120.00047 * 2 1 4 4 H 1.48504 * 109.47156 * 269.99729 * 3 2 1 5 5 H 1.48502 * 109.47293 * 29.99980 * 3 2 1 6 6 H 1.48498 * 109.47178 * 150.00194 * 3 2 1 7 7 C 1.38802 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99766 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00489 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00467 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47640 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99524 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00546 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00354 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47183 * 179.97438 * 14 13 11 16 16 H 1.09006 * 110.67241 * 56.77904 * 15 14 13 17 17 C 1.54886 * 110.75423 * 293.54165 * 15 14 13 18 18 C 1.54270 * 104.19869 * 203.55745 * 17 15 14 19 19 C 1.53875 * 106.59309 * 23.61008 * 18 17 15 20 20 H 1.08997 * 110.03847 * 240.66394 * 19 18 17 21 21 N 1.46499 * 110.02949 * 119.28412 * 19 18 17 22 22 C 1.34777 * 120.00065 * 86.45636 * 21 19 18 23 23 O 1.21343 * 120.00084 * 359.97438 * 22 21 19 24 24 C 1.49454 * 120.00164 * 180.02562 * 22 21 19 25 25 N 1.34773 * 120.00135 * 180.27489 * 24 22 21 26 26 O 1.21353 * 119.99759 * 359.97438 * 24 22 21 27 27 C 1.54267 * 106.60159 * 0.02562 * 19 18 17 28 28 H 0.96998 * 119.99351 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 59.99343 * 10 9 7 30 30 H 1.09007 * 109.46648 * 300.00115 * 10 9 7 31 31 H 0.97005 * 119.99951 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47384 * 59.99243 * 14 13 11 33 33 H 1.09008 * 109.46648 * 299.99212 * 14 13 11 34 34 H 1.09004 * 110.48679 * 84.88430 * 17 15 14 35 35 H 1.08998 * 110.60234 * 322.29525 * 17 15 14 36 36 H 1.08994 * 110.03135 * 264.33053 * 18 17 15 37 37 H 1.08999 * 110.07029 * 142.91432 * 18 17 15 38 38 H 0.97000 * 120.00380 * 266.44831 * 21 19 18 39 39 H 0.96998 * 120.00530 * 179.72563 * 25 24 22 40 40 H 0.97001 * 120.00114 * 359.71542 * 25 24 22 41 41 H 1.09010 * 110.48497 * 95.06635 * 27 19 18 42 42 H 1.08995 * 110.48734 * 217.70602 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3303 -7.7151 0.0019 15 6 3.5023 -8.6986 0.0020 16 1 4.1562 -8.5179 0.8552 17 6 4.2947 -8.6084 -1.3258 18 6 4.9934 -9.9788 -1.4434 19 6 4.1675 -10.9668 -0.6011 20 1 4.7829 -11.3828 0.1965 21 7 3.6535 -12.0434 -1.4513 22 6 4.4100 -13.1331 -1.6899 23 8 5.5170 -13.2221 -1.2009 24 6 3.8859 -14.2312 -2.5577 25 7 4.6402 -15.3233 -2.7918 26 8 2.7791 -14.1420 -3.0471 27 6 2.9955 -10.1625 -0.0016 28 1 -0.4849 0.8401 0.0004 29 1 3.1245 -3.7314 0.8904 30 1 3.1244 -3.7314 -0.8895 31 1 3.8009 -6.1836 0.0015 32 1 1.7220 -7.8754 -0.8883 33 1 1.7213 -7.8750 0.8917 34 1 5.0323 -7.8073 -1.2762 35 1 3.6184 -8.4515 -2.1661 36 1 6.0093 -9.9145 -1.0540 37 1 5.0124 -10.3008 -2.4846 38 1 2.7688 -11.9722 -1.8425 39 1 4.2985 -16.0379 -3.3518 40 1 5.5248 -15.3948 -2.4004 41 1 2.1078 -10.2580 -0.6270 42 1 2.7848 -10.4953 1.0147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756648410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -125.655573 kcal Electronic energy + Delta-G solvation = -24406.570907 eV Core-core repulsion = 20512.046725 eV Total energy + Delta-G solvation = -3894.524182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.16041 -39.68438 -38.99452 -38.13742 -35.34812 -34.24811 -33.42604 -32.42806 -30.48835 -29.16211 -28.41953 -25.63797 -25.36635 -24.22289 -21.34195 -21.11591 -20.21135 -20.16602 -19.11702 -17.88499 -17.69599 -16.95380 -16.47503 -16.37104 -16.13214 -15.90091 -15.53258 -15.10556 -14.80400 -14.59136 -14.22595 -14.01330 -13.91420 -13.72476 -13.15258 -12.87260 -12.65137 -12.37049 -12.32357 -12.14962 -11.82989 -11.55359 -11.24396 -11.08396 -11.05791 -11.02343 -10.93469 -10.75831 -10.46043 -10.20509 -9.81631 -9.71247 -9.40333 -9.07068 -8.88092 -8.23497 -6.49977 -6.21723 -3.92251 0.89625 1.97100 2.69562 3.03077 3.10509 3.22313 3.27554 3.30818 3.35797 3.70594 3.97401 4.08670 4.14514 4.20503 4.41701 4.83077 4.90804 4.95256 5.04280 5.10774 5.11642 5.13492 5.22372 5.36198 5.49431 5.61030 5.65208 5.67945 5.70997 5.84488 5.88460 5.90178 5.98710 6.02594 6.13944 6.35354 6.61571 6.77615 7.26742 7.48562 7.59475 7.70791 8.35126 8.61808 9.23629 10.85714 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.038451 B = 0.001648 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.024194 B =16987.304457 C =17255.826868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.130 3.870 15 C -0.102 4.102 16 H 0.088 0.912 17 C -0.121 4.121 18 C -0.134 4.134 19 C 0.139 3.861 20 H 0.098 0.902 21 N -0.691 5.691 22 C 0.506 3.494 23 O -0.520 6.520 24 C 0.512 3.488 25 N -0.823 5.823 26 O -0.520 6.520 27 C -0.122 4.122 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.414 0.586 39 H 0.412 0.588 40 H 0.414 0.586 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.111 -29.148 -2.897 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.005 3.995 15 C -0.121 4.121 16 H 0.107 0.893 17 C -0.159 4.159 18 C -0.173 4.173 19 C 0.035 3.965 20 H 0.116 0.884 21 N -0.345 5.345 22 C 0.286 3.714 23 O -0.396 6.396 24 C 0.291 3.709 25 N -0.389 5.389 26 O -0.395 6.395 27 C -0.161 4.161 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.244 0.756 40 H 0.245 0.755 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.990 -29.211 -2.764 31.332 hybrid contribution 2.361 0.971 -0.289 2.569 sum 13.352 -28.240 -3.053 31.386 Atomic orbital electron populations 1.70021 1.05953 1.27447 1.46853 1.24992 0.95026 0.99023 0.94532 0.86166 0.79404 0.81571 0.78342 1.20279 1.20746 1.19710 1.22873 0.94913 0.91681 1.58962 0.90931 1.85398 1.04966 0.96326 1.96715 1.23529 1.06550 0.95455 1.04893 1.20301 0.86525 0.86302 0.75155 1.90704 1.15400 1.85630 1.47514 1.45969 1.09909 1.05440 1.77950 1.21239 0.95202 0.80535 1.02477 1.22336 0.97010 0.93776 0.99001 0.89323 1.22469 0.99295 0.96755 0.97334 1.22582 0.99489 0.94666 1.00541 1.21840 0.95735 0.86355 0.92594 0.88422 1.46030 1.20448 1.18166 1.49817 1.20070 0.85678 0.83544 0.82117 1.90779 1.19323 1.79305 1.50149 1.20174 0.85281 0.83870 0.81579 1.43537 1.21481 1.20542 1.53326 1.90846 1.19460 1.79157 1.50076 1.22627 0.97468 0.93866 1.02090 0.92185 0.89250 0.89255 0.76856 0.91478 0.91479 0.90959 0.90821 0.90673 0.91132 0.74923 0.75599 0.75519 0.90007 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 11 C 0.53 9.66 7.85 -10.99 -0.09 9.57 16 12 O -0.52 -11.63 15.86 5.56 0.09 -11.55 16 13 N -0.74 -9.15 5.40 -60.29 -0.33 -9.48 16 14 C 0.13 1.34 5.12 -4.04 -0.02 1.31 16 15 C -0.10 -0.68 2.95 -88.62 -0.26 -0.95 16 16 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 17 C -0.12 -0.80 5.96 -25.07 -0.15 -0.95 16 18 C -0.13 -0.87 6.59 -25.61 -0.17 -1.03 16 19 C 0.14 0.87 3.23 -66.81 -0.22 0.65 16 20 H 0.10 0.68 7.61 -51.93 -0.39 0.28 16 21 N -0.69 -4.56 4.99 -53.15 -0.26 -4.82 16 22 C 0.51 3.95 7.88 -11.58 -0.09 3.85 16 23 O -0.52 -5.02 16.15 5.50 0.09 -4.93 16 24 C 0.51 3.72 8.16 -11.59 -0.09 3.63 16 25 N -0.82 -3.17 8.87 30.91 0.27 -2.90 16 26 O -0.52 -5.21 17.31 5.49 0.10 -5.12 16 27 C -0.12 -0.70 5.98 -25.06 -0.15 -0.85 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 31 H 0.40 3.78 8.33 -40.82 -0.34 3.44 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.55 8.02 -51.93 -0.42 0.14 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 38 H 0.41 2.44 7.81 -40.82 -0.32 2.12 16 39 H 0.41 0.84 8.93 -40.82 -0.36 0.48 16 40 H 0.41 1.06 8.30 -40.82 -0.34 0.72 16 41 H 0.08 0.45 7.64 -51.92 -0.40 0.06 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -37.32 373.89 -7.64 -44.96 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.91 Total: 1.64 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.82 Total: -0.51 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.42 Total: -42.59 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.27 Total: -21.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.32 -7.64 -44.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756648410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.699 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds