Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99962 * 2 1 4 4 H 1.48501 * 109.46901 * 269.99823 * 3 2 1 5 5 H 1.48497 * 109.47149 * 29.99684 * 3 2 1 6 6 H 1.48499 * 109.47164 * 149.99867 * 3 2 1 7 7 C 1.38796 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00425 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99993 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00193 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47215 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00256 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00373 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00196 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46835 * 179.97438 * 14 13 11 16 16 H 1.08991 * 110.54394 * 303.84579 * 15 14 13 17 17 C 1.54899 * 110.48245 * 66.45687 * 15 14 13 18 18 C 1.54891 * 102.74611 * 156.62045 * 17 15 14 19 19 C 1.54266 * 104.19455 * 322.05486 * 18 17 15 20 20 H 1.09001 * 110.03650 * 264.32561 * 19 18 17 21 21 N 1.46508 * 110.03176 * 142.89883 * 19 18 17 22 22 C 1.34774 * 119.99940 * 86.45349 * 21 19 18 23 23 O 1.21346 * 120.00240 * 359.97438 * 22 21 19 24 24 C 1.49452 * 119.99515 * 180.02562 * 22 21 19 25 25 N 1.34784 * 119.99503 * 179.97438 * 24 22 21 26 26 O 1.21346 * 120.00244 * 359.97438 * 24 22 21 27 27 C 1.53869 * 106.60029 * 23.61419 * 19 18 17 28 28 H 0.96998 * 120.00047 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46709 * 60.00129 * 10 9 7 30 30 H 1.08994 * 109.47232 * 299.99849 * 10 9 7 31 31 H 0.97000 * 119.99675 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47201 * 60.00413 * 14 13 11 33 33 H 1.08997 * 109.47310 * 299.99484 * 14 13 11 34 34 H 1.08997 * 110.75810 * 38.30431 * 17 15 14 35 35 H 1.08994 * 110.75501 * 274.93006 * 17 15 14 36 36 H 1.09000 * 110.48374 * 203.37774 * 18 17 15 37 37 H 1.08995 * 110.49176 * 80.73636 * 18 17 15 38 38 H 0.96994 * 119.99335 * 266.45214 * 21 19 18 39 39 H 0.96997 * 119.99962 * 0.02562 * 25 24 22 40 40 H 0.97006 * 119.99576 * 179.97438 * 25 24 22 41 41 H 1.08999 * 110.03445 * 119.28652 * 27 19 18 42 42 H 1.09009 * 110.03169 * 240.71589 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5730 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0457 -4.4947 0.0030 14 6 7.4907 -4.7357 0.0026 15 6 7.7564 -6.2425 0.0038 16 1 7.2634 -6.7171 0.8521 17 6 7.2790 -6.8781 -1.3257 18 6 8.1315 -8.1684 -1.4130 19 6 9.5114 -7.7478 -0.8665 20 1 10.1741 -7.4820 -1.6901 21 7 10.0956 -8.8402 -0.0842 22 6 10.8141 -9.8003 -0.6994 23 8 10.9767 -9.7602 -1.9012 24 6 11.4095 -10.9148 0.0986 25 7 12.1275 -11.8753 -0.5167 26 8 11.2464 -10.9551 1.3004 27 6 9.2729 -6.5234 0.0343 28 1 -0.4850 0.8400 -0.0004 29 1 3.6440 -3.4321 -0.8873 30 1 3.6433 -3.4310 0.8926 31 1 5.4291 -5.2435 0.0029 32 1 7.9340 -4.2883 0.8922 33 1 7.9333 -4.2892 -0.8878 34 1 7.4899 -6.2181 -2.1670 35 1 6.2171 -7.1192 -1.2791 36 1 8.2160 -8.5004 -2.4477 37 1 7.6991 -8.9540 -0.7934 38 1 9.9652 -8.8723 0.8764 39 1 12.2582 -11.8428 -1.4773 40 1 12.5143 -12.5985 0.0013 41 1 9.5918 -6.7418 1.0535 42 1 9.8198 -5.6632 -0.3522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756648411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = -125.385823 kcal Electronic energy + Delta-G solvation = -24433.188850 eV Core-core repulsion = 20538.676366 eV Total energy + Delta-G solvation = -3894.512484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.18561 -39.75982 -39.06824 -38.19333 -35.40531 -34.29233 -33.48336 -32.44259 -30.59265 -29.22265 -28.49770 -25.69327 -25.45307 -24.26461 -21.35985 -20.90939 -20.66864 -20.24640 -19.17579 -17.88726 -17.74938 -16.94979 -16.48615 -16.32125 -16.21329 -16.09930 -15.47008 -14.99267 -14.95129 -14.59738 -14.40940 -14.12842 -13.94412 -13.76075 -13.28962 -12.96631 -12.80224 -12.54478 -12.28267 -12.07636 -11.91047 -11.62573 -11.28756 -11.25603 -11.14756 -11.02970 -11.00377 -10.60251 -10.48876 -10.23065 -9.86063 -9.72663 -9.53415 -9.02516 -8.96466 -8.50455 -6.92197 -6.29267 -4.01067 0.86972 1.94719 2.66919 2.76399 2.97374 3.27838 3.32430 3.35071 3.50400 3.64567 3.95506 4.06610 4.13068 4.29876 4.32967 4.73014 4.84233 4.90420 4.94225 5.01386 5.04266 5.09879 5.13892 5.26397 5.31946 5.50902 5.62533 5.63761 5.65009 5.75930 5.80400 5.84908 5.94582 5.97604 6.01017 6.32683 6.51851 6.74871 7.24096 7.45889 7.59931 7.93759 8.41196 8.48635 9.16976 10.79953 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.045849 B = 0.001661 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.558199 B =16849.841662 C =16979.108258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.736 5.736 14 C 0.129 3.871 15 C -0.104 4.104 16 H 0.086 0.914 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.138 3.862 20 H 0.098 0.902 21 N -0.692 5.692 22 C 0.506 3.494 23 O -0.518 6.518 24 C 0.513 3.487 25 N -0.822 5.822 26 O -0.522 6.522 27 C -0.124 4.124 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.415 0.585 40 H 0.412 0.588 41 H 0.078 0.922 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.988 -24.578 -1.406 33.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.390 5.390 14 C 0.005 3.995 15 C -0.123 4.123 16 H 0.104 0.896 17 C -0.158 4.158 18 C -0.173 4.173 19 C 0.034 3.966 20 H 0.116 0.884 21 N -0.345 5.345 22 C 0.286 3.714 23 O -0.394 6.394 24 C 0.291 3.709 25 N -0.389 5.389 26 O -0.397 6.397 27 C -0.162 4.162 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.250 0.750 39 H 0.245 0.755 40 H 0.244 0.756 41 H 0.097 0.903 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 24.028 -22.724 -1.508 33.106 hybrid contribution -0.935 -1.102 0.189 1.457 sum 23.093 -23.826 -1.319 33.207 Atomic orbital electron populations 1.69937 1.05920 1.27766 1.48065 1.24710 0.94445 0.98960 0.93162 0.86733 0.81896 0.83278 0.79934 1.19211 1.19940 1.15927 1.22320 0.88291 0.97540 1.58805 0.89394 1.84791 1.09261 1.00120 1.97428 1.23277 0.94085 1.04353 1.05783 1.20276 0.90568 0.82320 0.75252 1.90702 1.58796 1.42248 1.47751 1.45936 1.07447 1.07994 1.77664 1.21323 0.81668 0.94073 1.02479 1.22242 0.95729 0.95198 0.99120 0.89591 1.22592 0.99862 0.96077 0.97238 1.22792 0.94170 0.98317 1.01998 1.21854 0.95178 0.85260 0.94286 0.88361 1.46046 1.51340 1.24605 1.12532 1.20073 0.79994 0.83581 0.87794 1.90786 1.58923 1.75717 1.13986 1.20177 0.79477 0.83611 0.87587 1.43545 1.54065 1.27379 1.13865 1.90836 1.58545 1.76100 1.14210 1.22419 0.96189 0.97346 1.00279 0.91943 0.88518 0.88488 0.76697 0.91511 0.91348 0.90480 0.90733 0.90654 0.90906 0.75003 0.75484 0.75596 0.90330 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 10 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 11 C 0.53 9.09 7.85 -10.99 -0.09 9.00 16 12 O -0.52 -11.02 15.86 5.55 0.09 -10.93 16 13 N -0.74 -8.57 5.40 -60.30 -0.33 -8.89 16 14 C 0.13 1.24 4.96 -4.04 -0.02 1.22 16 15 C -0.10 -0.65 2.93 -88.95 -0.26 -0.91 16 16 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 17 C -0.12 -0.74 6.01 -24.73 -0.15 -0.89 16 18 C -0.13 -0.82 6.53 -25.07 -0.16 -0.99 16 19 C 0.14 0.84 3.22 -66.81 -0.22 0.62 16 20 H 0.10 0.70 7.61 -51.93 -0.40 0.30 16 21 N -0.69 -4.23 5.04 -53.15 -0.27 -4.50 16 22 C 0.51 3.79 7.88 -11.59 -0.09 3.70 16 23 O -0.52 -4.94 16.16 5.50 0.09 -4.85 16 24 C 0.51 3.53 8.16 -11.58 -0.09 3.44 16 25 N -0.82 -2.94 8.87 30.91 0.27 -2.67 16 26 O -0.52 -4.95 17.31 5.50 0.10 -4.86 16 27 C -0.12 -0.66 6.14 -25.62 -0.16 -0.82 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.40 3.54 8.32 -40.82 -0.34 3.20 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.08 0.54 8.02 -51.93 -0.42 0.12 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 38 H 0.41 2.13 7.77 -40.82 -0.32 1.81 16 39 H 0.41 0.98 8.30 -40.82 -0.34 0.64 16 40 H 0.41 0.72 8.93 -40.82 -0.36 0.36 16 41 H 0.08 0.35 7.60 -51.93 -0.39 -0.04 16 42 H 0.09 0.46 7.84 -51.92 -0.41 0.06 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -36.94 370.94 -7.12 -44.05 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.93 Total: 1.06 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.80 Total: 0.27 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.46 Total: -41.77 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.27 Total: -20.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.94 -7.12 -44.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756648411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.332 kcal (2) G-P(sol) polarization free energy of solvation -36.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds