Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86807 * 119.99859 * 2 1 4 4 H 1.48502 * 109.47089 * 240.00268 * 3 2 1 5 5 H 1.48495 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46660 * 120.00300 * 3 2 1 7 7 C 1.38798 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00302 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00131 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47304 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00428 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00022 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47065 * 179.97438 * 14 13 11 16 16 H 1.09006 * 110.53908 * 52.38956 * 15 14 13 17 17 C 1.55238 * 110.46855 * 289.81069 * 15 14 13 18 18 C 1.54894 * 102.58338 * 203.39183 * 17 15 14 19 19 C 1.54266 * 104.31305 * 37.93170 * 18 17 15 20 20 H 1.09004 * 110.03005 * 95.65211 * 19 18 17 21 21 N 1.46494 * 110.03259 * 217.03573 * 19 18 17 22 22 C 1.34775 * 120.00282 * 273.54972 * 21 19 18 23 23 O 1.21355 * 119.99922 * 359.97438 * 22 21 19 24 24 C 1.49445 * 120.00369 * 180.02562 * 22 21 19 25 25 N 1.34781 * 120.00567 * 179.97438 * 24 22 21 26 26 O 1.21348 * 120.00292 * 359.97438 * 24 22 21 27 27 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 28 28 H 0.96998 * 119.99873 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47219 * 59.99533 * 10 9 7 30 30 H 1.08995 * 109.47182 * 299.99731 * 10 9 7 31 31 H 0.96999 * 120.00327 * 359.97438 * 13 11 10 32 32 H 1.08996 * 109.47158 * 60.00292 * 14 13 11 33 33 H 1.08995 * 109.46934 * 299.99821 * 14 13 11 34 34 H 1.08996 * 110.89448 * 85.10747 * 17 15 14 35 35 H 1.08993 * 110.76342 * 321.62413 * 17 15 14 36 36 H 1.09002 * 110.48891 * 279.18596 * 18 17 15 37 37 H 1.08998 * 110.48494 * 156.67683 * 18 17 15 38 38 H 0.97003 * 120.00592 * 93.54718 * 21 19 18 39 39 H 0.97004 * 119.99423 * 0.02562 * 25 24 22 40 40 H 0.96992 * 120.00563 * 179.97438 * 25 24 22 41 41 H 1.08999 * 110.04012 * 119.28327 * 27 19 18 42 42 H 1.09003 * 110.03070 * 240.71854 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5159 -3.8914 -0.0013 11 6 1.9875 -5.3026 -0.0018 12 8 0.7912 -5.5023 -0.0019 13 7 2.8442 -6.3431 -0.0020 14 6 2.3305 -7.7151 -0.0029 15 6 3.5025 -8.6985 -0.0036 16 1 4.1959 -8.4677 0.8052 17 6 4.2352 -8.6689 -1.3719 18 6 4.9216 -10.0567 -1.4173 19 6 3.8931 -11.0120 -0.7775 20 1 3.2975 -11.4933 -1.5533 21 7 4.5812 -12.0245 0.0270 22 6 5.0277 -13.1565 -0.5524 23 8 4.8592 -13.3372 -1.7405 24 6 5.7292 -14.1897 0.2684 25 7 6.1753 -15.3220 -0.3109 26 8 5.8973 -14.0093 1.4566 27 6 2.9908 -10.1485 0.1213 28 1 -0.4850 0.8400 0.0004 29 1 3.1239 -3.7317 0.8892 30 1 3.1251 -3.7310 -0.8908 31 1 3.8010 -6.1835 -0.0022 32 1 1.7223 -7.8747 -0.8932 33 1 1.7215 -7.8756 0.8867 34 1 4.9765 -7.8703 -1.3987 35 1 3.5224 -8.5635 -2.1897 36 1 5.8442 -10.0453 -0.8368 37 1 5.1240 -10.3487 -2.4477 38 1 4.7157 -11.8804 0.9768 39 1 6.0413 -15.4661 -1.2607 40 1 6.6309 -15.9924 0.2218 41 1 1.9568 -10.2100 -0.2182 42 1 3.0650 -10.4827 1.1561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756648412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -125.509360 kcal Electronic energy + Delta-G solvation = -24376.969974 eV Core-core repulsion = 20482.452133 eV Total energy + Delta-G solvation = -3894.517841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.16440 -39.68532 -38.99654 -38.13870 -35.34812 -34.25510 -33.43380 -32.42627 -30.49502 -29.15622 -28.41778 -25.62394 -25.35815 -24.17975 -21.31670 -20.87859 -20.65026 -20.14292 -19.15461 -17.84683 -17.73154 -16.92671 -16.41643 -16.25424 -16.19401 -16.02621 -15.37364 -14.90064 -14.80342 -14.58087 -14.39149 -14.09707 -13.88961 -13.80045 -13.15477 -12.92917 -12.59446 -12.49496 -12.26044 -12.00341 -11.79943 -11.57353 -11.24500 -11.09798 -11.04329 -11.03792 -10.97496 -10.76365 -10.47583 -10.21341 -9.82314 -9.70367 -9.40091 -9.06205 -8.87677 -8.23808 -6.49844 -6.21323 -3.92045 0.88551 1.96543 2.68610 3.03648 3.10729 3.23610 3.27634 3.30524 3.34205 3.70442 3.98202 4.08980 4.17049 4.20798 4.34467 4.87378 4.92610 4.97252 5.04965 5.06538 5.13710 5.14585 5.24589 5.30619 5.52927 5.60758 5.65168 5.68676 5.72409 5.84948 5.86792 5.90166 5.96885 6.02735 6.14051 6.34182 6.62046 6.76749 7.25777 7.47542 7.59358 7.71024 8.35142 8.62028 9.23822 10.86025 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.041011 B = 0.001620 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.584693 B =17281.283825 C =17455.556004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.128 3.872 15 C -0.104 4.104 16 H 0.085 0.915 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.138 3.862 20 H 0.098 0.902 21 N -0.692 5.692 22 C 0.506 3.494 23 O -0.519 6.519 24 C 0.513 3.487 25 N -0.822 5.822 26 O -0.522 6.522 27 C -0.124 4.124 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.413 0.587 39 H 0.415 0.585 40 H 0.411 0.589 41 H 0.086 0.914 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.016 -29.188 -1.285 32.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.004 3.996 15 C -0.123 4.123 16 H 0.103 0.897 17 C -0.157 4.157 18 C -0.173 4.173 19 C 0.034 3.966 20 H 0.116 0.884 21 N -0.345 5.345 22 C 0.285 3.715 23 O -0.394 6.394 24 C 0.292 3.708 25 N -0.389 5.389 26 O -0.397 6.397 27 C -0.162 4.162 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.250 0.750 39 H 0.245 0.755 40 H 0.244 0.756 41 H 0.104 0.896 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.708 -29.261 -1.393 31.547 hybrid contribution 2.703 0.982 0.232 2.885 sum 14.411 -28.278 -1.161 31.760 Atomic orbital electron populations 1.70008 1.05951 1.27563 1.46762 1.24987 0.95020 0.99003 0.94516 0.86227 0.79240 0.81259 0.78787 1.19946 1.20803 1.19953 1.22832 0.94881 0.91699 1.59093 0.90981 1.85395 1.04956 0.96302 1.96722 1.23530 1.06551 0.95468 1.04884 1.20302 0.86527 0.86306 0.75153 1.90703 1.15405 1.85630 1.47524 1.45980 1.09886 1.05472 1.77942 1.21317 0.95274 0.80536 1.02457 1.22302 0.97203 0.94024 0.98726 0.89652 1.22654 0.99587 0.96518 0.96944 1.22791 0.98257 0.94661 1.01588 1.21852 0.93342 0.87801 0.93575 0.88357 1.46049 1.56807 1.17883 1.13755 1.20071 0.80373 0.83286 0.87725 1.90788 1.55646 1.78090 1.14916 1.20179 0.79618 0.83535 0.87517 1.43543 1.59902 1.20222 1.15195 1.90836 1.55800 1.77929 1.15133 1.22416 0.99962 0.93670 1.00185 0.92127 0.89268 0.89251 0.76882 0.91387 0.91554 0.90756 0.90488 0.90962 0.90710 0.75005 0.75487 0.75608 0.89576 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 11 C 0.53 9.67 7.85 -10.99 -0.09 9.58 16 12 O -0.52 -11.64 15.86 5.56 0.09 -11.55 16 13 N -0.74 -9.16 5.45 -60.29 -0.33 -9.49 16 14 C 0.13 1.32 4.96 -4.04 -0.02 1.30 16 15 C -0.10 -0.69 2.89 -88.77 -0.26 -0.95 16 16 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 17 C -0.12 -0.78 6.22 -24.55 -0.15 -0.93 16 18 C -0.13 -0.86 6.51 -25.07 -0.16 -1.02 16 19 C 0.14 0.88 3.23 -66.82 -0.22 0.66 16 20 H 0.10 0.72 7.61 -51.93 -0.39 0.33 16 21 N -0.69 -4.39 5.04 -53.16 -0.27 -4.66 16 22 C 0.51 3.88 7.88 -11.59 -0.09 3.79 16 23 O -0.52 -5.04 16.15 5.49 0.09 -4.95 16 24 C 0.51 3.61 8.16 -11.59 -0.09 3.52 16 25 N -0.82 -3.04 8.87 30.90 0.27 -2.77 16 26 O -0.52 -5.04 17.31 5.50 0.10 -4.94 16 27 C -0.12 -0.71 6.14 -25.62 -0.16 -0.87 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.79 8.44 -40.82 -0.34 3.44 16 32 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.56 7.97 -51.93 -0.41 0.15 16 36 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 2.23 7.77 -40.82 -0.32 1.91 16 39 H 0.41 1.03 8.30 -40.82 -0.34 0.69 16 40 H 0.41 0.77 8.93 -40.82 -0.36 0.41 16 41 H 0.09 0.50 7.84 -51.93 -0.41 0.10 16 42 H 0.08 0.38 7.60 -51.93 -0.39 -0.01 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -37.28 373.83 -7.63 -44.91 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.89 Total: 1.46 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.82 Total: -0.70 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.41 Total: -42.32 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.27 Total: -21.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.28 -7.63 -44.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756648412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.602 kcal (2) G-P(sol) polarization free energy of solvation -37.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds