Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21449 * 120.00470 * 2 1 4 4 C 1.40984 * 119.99669 * 179.97438 * 2 1 3 5 5 C 1.36147 * 126.68615 * 175.40140 * 4 2 1 6 6 O 1.35257 * 125.44307 * 0.02562 * 5 4 2 7 7 C 1.47301 * 109.12031 * 179.97438 * 5 4 2 8 8 O 1.21626 * 124.95197 * 180.02562 * 7 5 4 9 9 N 1.34504 * 110.09054 * 0.02562 * 7 5 4 10 10 C 1.36001 * 125.98427 * 180.02562 * 9 7 5 11 11 H 1.08000 * 119.99677 * 17.82778 * 10 9 7 12 12 C 1.39692 * 119.99859 * 197.82979 * 10 9 7 13 13 N 1.30951 * 120.00416 * 3.82716 * 12 10 9 14 14 Si 1.86803 * 119.99770 * 183.83262 * 12 10 9 15 15 H 1.48505 * 109.47233 * 89.99666 * 14 12 10 16 16 H 1.48493 * 109.47192 * 209.99820 * 14 12 10 17 17 H 1.48504 * 109.47185 * 329.99676 * 14 12 10 18 18 C 1.46749 * 108.02972 * 0.02562 * 9 7 5 19 19 H 1.09002 * 110.18127 * 119.19274 * 18 9 7 20 20 C 1.50698 * 110.12148 * 240.83283 * 18 9 7 21 21 C 1.38234 * 120.00209 * 43.68818 * 20 18 9 22 22 C 1.38235 * 120.00348 * 179.73154 * 21 20 18 23 23 C 1.38234 * 119.99977 * 0.25223 * 22 21 20 24 24 C 1.50694 * 119.99937 * 180.02562 * 23 22 21 25 25 C 1.53005 * 109.46982 * 120.00264 * 24 23 22 26 26 C 1.53000 * 109.47168 * 240.00126 * 24 23 22 27 27 C 1.38236 * 119.99776 * 0.02610 * 23 22 21 28 28 C 1.38233 * 120.00277 * 223.93079 * 20 18 9 29 29 H 1.08998 * 109.47522 * 174.38186 * 1 2 3 30 30 H 1.09005 * 109.46974 * 294.38301 * 1 2 3 31 31 H 1.09004 * 109.46898 * 54.37864 * 1 2 3 32 32 H 0.96705 * 113.99987 * 180.02562 * 6 5 4 33 33 H 0.96998 * 120.00078 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.99723 * 0.02562 * 21 20 18 35 35 H 1.08004 * 120.00106 * 180.28159 * 22 21 20 36 36 H 1.08996 * 109.47588 * 0.02562 * 24 23 22 37 37 H 1.09005 * 109.46971 * 60.00217 * 25 24 23 38 38 H 1.08994 * 109.47070 * 179.97438 * 25 24 23 39 39 H 1.08998 * 109.47116 * 300.00152 * 25 24 23 40 40 H 1.09004 * 109.47115 * 180.02562 * 26 24 23 41 41 H 1.09001 * 109.47022 * 299.99978 * 26 24 23 42 42 H 1.09001 * 109.47221 * 60.00321 * 26 24 23 43 43 H 1.08000 * 120.00004 * 179.97438 * 27 23 22 44 44 H 1.08007 * 120.00203 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0517 0.0000 4 6 2.2118 -1.2210 0.0005 5 6 3.5610 -1.3814 -0.0869 6 8 4.4648 -0.3804 -0.1901 7 6 3.8793 -2.8191 -0.0500 8 8 5.0008 -3.2862 -0.1085 9 7 2.7489 -3.5400 0.0579 10 6 2.6690 -4.8963 0.1195 11 1 3.5437 -5.4779 0.3705 12 6 1.4554 -5.5369 -0.1418 13 7 0.4141 -4.8384 -0.5191 14 14 1.3181 -7.3903 0.0471 15 1 0.9068 -7.7172 1.4361 16 1 0.3045 -7.9112 -0.9049 17 1 2.6341 -8.0160 -0.2397 18 6 1.6171 -2.6068 0.0974 19 1 0.9498 -2.7891 -0.7451 20 6 0.8659 -2.7576 1.3951 21 6 1.5589 -2.8717 2.5857 22 6 0.8698 -3.0045 3.7766 23 6 -0.5123 -3.0283 3.7765 24 6 -1.2636 -3.1725 5.0748 25 6 -2.1645 -1.9531 5.2808 26 6 -2.1214 -4.4386 5.0299 27 6 -1.2053 -2.9200 2.5852 28 6 -0.5161 -2.7869 1.3943 29 1 -0.3634 -1.0227 -0.1006 30 1 -0.3633 0.4243 0.9361 31 1 -0.3633 0.5986 -0.8354 32 1 5.3820 -0.6825 -0.2422 33 1 -0.4284 -5.2833 -0.7009 34 1 2.6387 -2.8524 2.5859 35 1 1.4112 -3.0890 4.7073 36 1 -0.5541 -3.2430 5.8993 37 1 -2.8741 -1.8822 4.4564 38 1 -2.7082 -2.0575 6.2197 39 1 -1.5533 -1.0511 5.3128 40 1 -2.6652 -4.5426 5.9688 41 1 -2.8310 -4.3676 4.2055 42 1 -1.4796 -5.3073 4.8831 43 1 -2.2851 -2.9391 2.5850 44 1 -1.0576 -2.7021 0.4637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000813554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = -64.130899 kcal Electronic energy + Delta-G solvation = -29375.499459 eV Core-core repulsion = 25451.739579 eV Total energy + Delta-G solvation = -3923.759880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.73585 -38.89861 -38.22500 -37.09224 -35.79845 -34.63043 -33.35794 -31.28022 -30.29081 -29.56341 -29.22448 -27.07958 -25.72403 -25.46293 -22.97959 -22.20694 -21.59527 -20.35453 -19.59801 -18.32436 -17.75038 -17.13740 -16.02577 -15.79840 -15.51406 -14.92864 -14.63299 -14.54313 -14.37929 -14.02192 -14.01007 -13.81136 -13.47973 -13.38107 -13.24760 -12.90570 -12.70639 -12.48156 -12.36952 -12.19450 -11.83846 -11.71885 -11.65861 -11.56133 -11.35598 -11.32594 -11.00535 -10.90486 -10.78304 -10.63793 -10.34335 -10.23285 -9.73003 -9.31764 -8.67644 -8.41178 -8.22531 -8.02921 -7.85018 -6.82764 -4.25288 1.20734 1.92821 2.04467 2.93129 3.02054 3.05212 3.26950 3.70412 4.01078 4.08202 4.37604 4.54586 4.75243 4.85101 4.88646 4.97006 5.22128 5.30211 5.48508 5.54193 5.60319 5.61811 5.64925 5.67076 5.71988 5.85985 5.87283 5.88024 5.99310 6.08757 6.15657 6.23399 6.30614 6.38727 6.45821 6.54511 6.62263 6.69051 6.80499 7.01418 7.05489 7.12649 7.33494 7.37418 7.60630 7.79642 8.04182 8.30256 8.68572 8.74301 9.56278 10.16218 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009051 B = 0.006587 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.862590 B = 4249.472120 C = 6204.106316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.418 3.582 3 O -0.485 6.485 4 C -0.310 4.310 5 C 0.155 3.845 6 O -0.429 6.429 7 C 0.399 3.601 8 O -0.594 6.594 9 N -0.372 5.372 10 C -0.284 4.284 11 H 0.113 0.887 12 C 0.045 3.955 13 N -0.839 5.839 14 Si 0.936 3.064 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.264 1.264 18 C 0.219 3.781 19 H 0.139 0.861 20 C -0.031 4.031 21 C -0.096 4.096 22 C -0.125 4.125 23 C -0.090 4.090 24 C -0.053 4.053 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.127 4.127 28 C -0.077 4.077 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.401 0.599 33 H 0.282 0.718 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.112 0.888 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 1.936 6.348 10.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.302 3.698 3 O -0.366 6.366 4 C -0.317 4.317 5 C 0.100 3.900 6 O -0.228 6.228 7 C 0.191 3.809 8 O -0.483 6.483 9 N -0.085 5.085 10 C -0.412 4.412 11 H 0.130 0.870 12 C -0.165 4.165 13 N -0.474 5.474 14 Si 0.761 3.239 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.188 1.188 18 C 0.114 3.886 19 H 0.156 0.844 20 C -0.031 4.031 21 C -0.115 4.115 22 C -0.143 4.143 23 C -0.090 4.090 24 C -0.072 4.072 25 C -0.199 4.199 26 C -0.199 4.199 27 C -0.145 4.145 28 C -0.095 4.095 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.254 0.746 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.130 0.870 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.237 2.462 6.277 10.645 hybrid contribution 0.349 -1.313 -0.001 1.359 sum -7.888 1.149 6.276 10.145 Atomic orbital electron populations 1.22298 0.95054 1.04806 1.03556 1.19834 0.91113 0.86811 0.72061 1.90551 1.72119 1.34100 1.39793 1.21131 0.91978 0.97051 1.21546 1.21842 0.90098 0.89034 0.89067 1.84875 1.20227 1.31033 1.86617 1.18444 0.86095 0.85940 0.90462 1.90673 1.21846 1.75318 1.60487 1.43509 1.05118 1.05529 1.54376 1.19723 0.98230 0.78765 1.44435 0.86956 1.25527 0.94663 1.01529 0.94762 1.69521 1.02064 1.37308 1.38530 0.85735 0.78990 0.80439 0.78750 1.19613 1.20170 1.18843 1.19270 0.89012 0.82595 0.97697 0.84420 1.19396 0.93332 0.97358 0.93063 1.20852 0.99575 0.98932 0.92106 1.20825 0.93463 1.02508 0.97490 1.19630 0.93411 1.01549 0.94424 1.20048 0.96772 0.95359 0.94976 1.21840 0.99298 0.97569 1.01167 1.21840 0.99565 0.97275 1.01260 1.20762 0.98897 1.02741 0.92099 1.20832 0.93333 0.98044 0.97323 0.89562 0.89702 0.90029 0.74603 0.90691 0.87211 0.87165 0.91068 0.92493 0.92976 0.92637 0.92987 0.92499 0.92595 0.87023 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 9.72 36.00 0.35 -2.66 16 2 C 0.42 8.15 6.99 -33.27 -0.23 7.92 16 3 O -0.48 -10.76 16.85 -8.84 -0.15 -10.91 16 4 C -0.31 -6.43 5.37 -104.13 -0.56 -6.99 16 5 C 0.16 3.38 7.38 -36.65 -0.27 3.11 16 6 O -0.43 -8.39 12.71 -33.47 -0.43 -8.82 16 7 C 0.40 9.69 7.89 -12.70 -0.10 9.59 16 8 O -0.59 -15.85 17.59 5.25 0.09 -15.76 16 9 N -0.37 -8.86 2.23 -111.19 -0.25 -9.11 16 10 C -0.28 -6.96 9.64 -15.16 -0.15 -7.11 16 11 H 0.11 2.86 7.83 -52.49 -0.41 2.45 16 12 C 0.04 1.01 5.26 -17.38 -0.09 0.91 16 13 N -0.84 -18.20 9.03 55.53 0.50 -17.70 16 14 Si 0.94 18.15 29.56 -169.99 -5.02 13.13 16 15 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 16 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 C 0.22 4.58 1.59 -69.90 -0.11 4.46 16 19 H 0.14 2.98 6.25 -51.93 -0.32 2.66 16 20 C -0.03 -0.59 3.31 -104.63 -0.35 -0.94 16 21 C -0.10 -1.86 9.25 -39.58 -0.37 -2.23 16 22 C -0.12 -2.09 9.67 -39.58 -0.38 -2.48 16 23 C -0.09 -1.35 4.78 -104.63 -0.50 -1.86 16 24 C -0.05 -0.64 3.09 -91.77 -0.28 -0.92 16 25 C -0.14 -1.48 9.01 37.16 0.33 -1.14 16 26 C -0.14 -1.59 9.01 37.16 0.33 -1.26 16 27 C -0.13 -1.92 8.71 -39.58 -0.34 -2.27 16 28 C -0.08 -1.30 7.03 -39.58 -0.28 -1.58 16 29 H 0.09 1.26 4.12 -51.93 -0.21 1.04 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.40 6.15 8.86 45.56 0.40 6.56 16 33 H 0.28 5.74 8.30 -40.82 -0.34 5.41 16 34 H 0.11 2.29 7.86 -52.49 -0.41 1.88 16 35 H 0.11 1.64 7.95 -52.48 -0.42 1.22 16 36 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 1.45 7.10 -52.49 -0.37 1.07 16 44 H 0.12 1.96 7.03 -52.48 -0.37 1.59 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -29.24 363.80 -7.73 -36.97 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.96 Total: 12.15 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -3.00 Total: -5.43 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.25 Total: -26.81 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.48 Total: -35.48 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.24 -7.73 -36.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000813554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.161 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds