Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21456 * 120.00148 * 2 1 4 4 C 1.40974 * 119.99878 * 179.97438 * 2 1 3 5 5 C 1.36150 * 126.68832 * 355.42924 * 4 2 1 6 6 O 1.35251 * 125.43981 * 359.97017 * 5 4 2 7 7 C 1.47298 * 109.12127 * 179.70464 * 5 4 2 8 8 O 1.21636 * 124.95425 * 180.26253 * 7 5 4 9 9 N 1.34504 * 110.09336 * 0.26881 * 7 5 4 10 10 C 1.35997 * 125.98752 * 180.02562 * 9 7 5 11 11 H 1.08008 * 119.99627 * 340.03025 * 10 9 7 12 12 C 1.39694 * 120.00311 * 160.03359 * 10 9 7 13 13 N 1.30945 * 119.99943 * 348.98299 * 12 10 9 14 14 Si 1.86798 * 119.99941 * 168.98154 * 12 10 9 15 15 H 1.48506 * 109.47282 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47251 * 119.99741 * 14 12 10 17 17 H 1.48504 * 109.47251 * 239.99979 * 14 12 10 18 18 C 1.46759 * 108.02857 * 359.97438 * 9 7 5 19 19 H 1.09003 * 110.12132 * 240.83907 * 18 9 7 20 20 C 1.50695 * 110.11839 * 119.23416 * 18 9 7 21 21 C 1.38229 * 120.00249 * 315.29117 * 20 18 9 22 22 C 1.38237 * 119.99950 * 179.78810 * 21 20 18 23 23 C 1.38236 * 120.00173 * 0.46760 * 22 21 20 24 24 C 1.50698 * 120.00334 * 179.79274 * 23 22 21 25 25 C 1.53006 * 109.46625 * 299.97323 * 24 23 22 26 26 C 1.53000 * 109.47306 * 59.97310 * 24 23 22 27 27 C 1.38239 * 119.99494 * 359.75991 * 23 22 21 28 28 C 1.38232 * 120.00324 * 0.03291 * 27 23 22 29 29 H 1.09002 * 109.47209 * 264.08200 * 1 2 3 30 30 H 1.09006 * 109.46487 * 24.08180 * 1 2 3 31 31 H 1.08992 * 109.47027 * 144.08008 * 1 2 3 32 32 H 0.96704 * 114.00174 * 179.71619 * 6 5 4 33 33 H 0.97006 * 120.00027 * 179.97438 * 13 12 10 34 34 H 1.07999 * 120.00095 * 359.97438 * 21 20 18 35 35 H 1.08005 * 119.99894 * 180.24868 * 22 21 20 36 36 H 1.08998 * 109.47257 * 179.97438 * 24 23 22 37 37 H 1.09002 * 109.47044 * 299.99744 * 25 24 23 38 38 H 1.08998 * 109.46902 * 60.00274 * 25 24 23 39 39 H 1.09002 * 109.46891 * 179.97438 * 25 24 23 40 40 H 1.08991 * 109.47027 * 59.99867 * 26 24 23 41 41 H 1.08994 * 109.47018 * 180.02562 * 26 24 23 42 42 H 1.09007 * 109.46914 * 300.00097 * 26 24 23 43 43 H 1.07999 * 119.99367 * 180.02562 * 27 23 22 44 44 H 1.07996 * 119.99870 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0518 0.0000 4 6 2.2118 -1.2209 0.0005 5 6 1.6760 -2.4694 0.0881 6 8 0.3573 -2.7515 0.1914 7 6 2.7614 -3.4643 0.0460 8 8 2.6047 -4.6694 0.0992 9 7 3.9512 -2.8460 -0.0598 10 6 5.1654 -3.4551 -0.1251 11 1 5.2790 -4.4714 0.2224 12 6 6.2656 -2.7663 -0.6413 13 7 6.0926 -1.6240 -1.2576 14 14 7.9837 -3.4748 -0.4524 15 1 7.9091 -4.7666 0.2763 16 1 8.5774 -3.6982 -1.7951 17 1 8.8304 -2.5233 0.3112 18 6 3.7096 -1.3988 -0.0939 19 1 4.0756 -0.9795 -1.0311 20 6 4.3910 -0.7319 1.0731 21 6 4.2996 -1.2865 2.3360 22 6 4.9284 -0.6771 3.4056 23 6 5.6405 0.4921 3.2142 24 6 6.3220 1.1590 4.3811 25 6 5.2786 1.5309 5.4365 26 6 7.3448 0.1986 4.9913 27 6 5.7279 1.0493 1.9520 28 6 5.1027 0.4376 0.8816 29 1 -0.3634 -0.1060 1.0222 30 1 -0.3632 0.9383 -0.4194 31 1 -0.3633 -0.8322 -0.6028 32 1 0.1598 -3.6969 0.2388 33 1 6.8566 -1.1455 -1.6158 34 1 3.7395 -2.1976 2.4864 35 1 4.8603 -1.1126 4.3916 36 1 6.8297 2.0607 4.0385 37 1 4.5500 2.2152 5.0017 38 1 4.7710 0.6292 5.7791 39 1 5.7716 2.0129 6.2808 40 1 8.0881 -0.0664 4.2394 41 1 7.8374 0.6808 5.8356 42 1 6.8371 -0.7031 5.3339 43 1 6.2846 1.9626 1.8024 44 1 5.1707 0.8731 -0.1043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000813555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -65.550481 kcal Electronic energy + Delta-G solvation = -29287.691944 eV Core-core repulsion = 25363.870506 eV Total energy + Delta-G solvation = -3923.821437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.67758 -38.80924 -38.20745 -37.23587 -35.70858 -34.58335 -33.33085 -31.06651 -30.22334 -29.95502 -28.95307 -27.02135 -25.71602 -25.33955 -22.92902 -22.24644 -21.38539 -20.47313 -19.49305 -18.44669 -17.65677 -17.12123 -16.22671 -15.70515 -15.12753 -14.92219 -14.75776 -14.52355 -14.30937 -14.01998 -13.93789 -13.84590 -13.53357 -13.32005 -13.28407 -12.85217 -12.58169 -12.54404 -12.30061 -12.13138 -11.83155 -11.71895 -11.67346 -11.44875 -11.35609 -11.31756 -10.99888 -10.81309 -10.75266 -10.57127 -10.25802 -10.17469 -9.70978 -9.32119 -8.67371 -8.34865 -8.13609 -8.02590 -7.77387 -6.78482 -4.22530 1.14717 2.02700 2.16323 2.94147 3.05238 3.10197 3.27338 3.71916 4.02588 4.03497 4.44287 4.49778 4.68297 4.88100 4.95227 5.03603 5.31730 5.37926 5.58033 5.60871 5.64898 5.65714 5.70444 5.71786 5.79834 5.85252 5.92764 5.94370 6.06003 6.18289 6.20217 6.24016 6.36430 6.37133 6.47083 6.60472 6.70745 6.76794 6.91506 7.07949 7.12909 7.22027 7.40151 7.47709 7.61965 7.71677 8.07164 8.28696 8.72198 8.77700 9.59854 10.19439 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.006611 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.629028 B = 4234.252390 C = 6111.173507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.414 3.586 3 O -0.479 6.479 4 C -0.297 4.297 5 C 0.140 3.860 6 O -0.444 6.444 7 C 0.397 3.603 8 O -0.597 6.597 9 N -0.368 5.368 10 C -0.286 4.286 11 H 0.114 0.886 12 C 0.046 3.954 13 N -0.831 5.831 14 Si 0.933 3.067 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.272 1.272 18 C 0.216 3.784 19 H 0.141 0.859 20 C -0.032 4.032 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.052 4.052 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.130 4.130 28 C -0.065 4.065 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.405 0.595 33 H 0.283 0.717 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.111 0.889 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 5.380 6.633 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.297 3.703 3 O -0.359 6.359 4 C -0.304 4.304 5 C 0.085 3.915 6 O -0.246 6.246 7 C 0.189 3.811 8 O -0.488 6.488 9 N -0.080 5.080 10 C -0.414 4.414 11 H 0.131 0.869 12 C -0.165 4.165 13 N -0.465 5.465 14 Si 0.757 3.243 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.198 1.198 18 C 0.112 3.888 19 H 0.158 0.842 20 C -0.032 4.032 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.091 4.091 24 C -0.071 4.071 25 C -0.199 4.199 26 C -0.200 4.200 27 C -0.148 4.148 28 C -0.083 4.083 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.259 0.741 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.688 6.046 6.527 9.056 hybrid contribution 0.652 -0.991 -0.046 1.187 sum -1.036 5.055 6.482 8.285 Atomic orbital electron populations 1.22156 0.94772 1.03690 1.04015 1.19964 0.90914 0.87077 0.72349 1.90546 1.71964 1.34253 1.39125 1.21110 0.96164 0.92684 1.20432 1.21777 0.83629 0.95527 0.90524 1.84700 1.19569 1.32783 1.87524 1.18438 0.83827 0.87859 0.91020 1.90672 1.83823 1.13172 1.61087 1.43555 1.05251 1.05236 1.53998 1.19736 0.82646 1.00126 1.38897 0.86892 1.25571 1.01039 0.95772 0.94076 1.69521 1.33040 1.14154 1.29831 0.85735 0.80187 0.79622 0.78716 1.18605 1.19998 1.19753 1.19175 0.87668 0.82157 0.99819 0.84244 1.19331 0.96514 0.94523 0.92864 1.20833 0.99325 0.99101 0.92459 1.20681 0.99443 0.95993 0.98136 1.19627 0.99274 0.95976 0.94177 1.20042 0.95524 0.97877 0.93627 1.21839 0.98694 1.01487 0.97854 1.21844 0.98697 0.99275 1.00161 1.20869 1.01456 1.00060 0.92435 1.20821 0.94737 0.94373 0.98388 0.89594 0.90754 0.89412 0.74105 0.90630 0.87285 0.87188 0.91024 0.92620 0.92573 0.92975 0.92591 0.92979 0.92509 0.87107 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 9.28 36.01 0.33 -2.44 16 2 C 0.41 7.89 7.01 -33.27 -0.23 7.66 16 3 O -0.48 -10.23 17.05 5.40 0.09 -10.13 16 4 C -0.30 -6.08 5.39 -104.13 -0.56 -6.64 16 5 C 0.14 2.77 7.30 -36.65 -0.27 2.51 16 6 O -0.44 -6.85 11.12 -17.45 -0.19 -7.04 16 7 C 0.40 9.45 7.89 -12.70 -0.10 9.35 16 8 O -0.60 -15.64 17.60 5.24 0.09 -15.55 16 9 N -0.37 -8.99 2.25 -111.18 -0.25 -9.24 16 10 C -0.29 -7.24 9.60 -15.16 -0.15 -7.39 16 11 H 0.11 2.94 7.86 -52.48 -0.41 2.53 16 12 C 0.05 1.09 5.15 -17.39 -0.09 1.00 16 13 N -0.83 -19.62 10.01 55.53 0.56 -19.07 16 14 Si 0.93 18.85 29.57 -169.99 -5.03 13.82 16 15 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 C 0.22 4.88 2.17 -69.89 -0.15 4.73 16 19 H 0.14 3.43 6.23 -51.93 -0.32 3.11 16 20 C -0.03 -0.68 3.62 -104.63 -0.38 -1.06 16 21 C -0.10 -2.03 9.27 -39.59 -0.37 -2.39 16 22 C -0.12 -2.23 8.71 -39.58 -0.34 -2.57 16 23 C -0.09 -1.52 4.78 -104.62 -0.50 -2.02 16 24 C -0.05 -0.70 3.09 -91.77 -0.28 -0.98 16 25 C -0.14 -1.67 9.01 37.16 0.33 -1.33 16 26 C -0.14 -1.76 9.01 37.16 0.33 -1.42 16 27 C -0.13 -2.34 9.67 -39.58 -0.38 -2.72 16 28 C -0.06 -1.32 8.99 -39.58 -0.36 -1.67 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.22 6.49 -51.93 -0.34 0.89 16 32 H 0.40 4.94 8.86 45.56 0.40 5.35 16 33 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 34 H 0.11 2.31 7.89 -52.49 -0.41 1.90 16 35 H 0.11 1.72 7.10 -52.48 -0.37 1.35 16 36 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.66 7.39 -51.93 -0.38 0.28 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.70 7.39 -51.92 -0.38 0.32 16 43 H 0.11 1.73 7.95 -52.49 -0.42 1.31 16 44 H 0.12 2.48 8.01 -52.49 -0.42 2.06 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -29.09 369.04 -7.47 -36.56 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.14 Total: 12.49 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.16 Total: -7.39 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: 0.30 Total: -28.31 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.01 Total: -32.73 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.09 -7.47 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000813555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.991 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds