Wall clock time and date at job start Tue Mar 31 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00292 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00243 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00042 * 3 2 1 7 7 C 1.38795 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99890 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99644 * 0.27758 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72355 * 9 7 2 11 11 N 1.32022 * 118.61945 * 359.97438 * 10 9 7 12 12 C 1.34041 * 120.41231 * 180.02562 * 11 10 9 13 13 C 1.40204 * 121.91592 * 179.97438 * 12 11 10 14 14 C 1.36334 * 119.58420 * 180.02562 * 13 12 11 15 15 C 1.39193 * 121.00896 * 359.97438 * 14 13 12 16 16 C 1.36442 * 120.90287 * 0.02562 * 15 14 13 17 17 C 1.39855 * 119.53446 * 0.02562 * 16 15 14 18 18 C 1.41776 * 122.01406 * 179.97438 * 17 16 15 19 19 N 1.37857 * 120.84707 * 0.02562 * 18 17 16 20 20 C 1.46499 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.47168 * 275.00563 * 20 19 18 22 22 C 1.53004 * 109.47069 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46992 * 60.00156 * 22 21 20 24 24 C 1.53008 * 109.46719 * 299.99761 * 23 22 21 25 25 C 1.52994 * 109.47621 * 155.00282 * 20 19 18 26 26 N 1.32451 * 118.30602 * 179.75815 * 18 17 16 27 27 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.20560 * 0.03688 * 13 12 11 29 29 H 1.07994 * 119.49310 * 179.97438 * 14 13 12 30 30 H 1.08000 * 119.54266 * 180.02562 * 15 14 13 31 31 H 1.08005 * 120.23545 * 179.97438 * 16 15 14 32 32 H 0.97004 * 120.00267 * 0.02562 * 19 18 17 33 33 H 1.09007 * 109.47185 * 35.00142 * 20 19 18 34 34 H 1.09001 * 109.47017 * 299.99523 * 21 20 19 35 35 H 1.08995 * 109.47091 * 59.99431 * 21 20 19 36 36 H 1.09001 * 109.47128 * 299.99842 * 22 21 20 37 37 H 1.08999 * 109.46972 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.46730 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.47044 * 59.99759 * 23 22 21 40 40 H 1.08995 * 109.47361 * 299.99804 * 24 23 22 41 41 H 1.09004 * 109.46538 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.46948 * 300.00136 * 25 20 19 43 43 H 1.09001 * 109.47084 * 60.00158 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0096 -1.2020 -0.0005 8 1 3.0896 -1.2019 -0.0010 9 16 1.1286 -2.7279 -0.0086 10 6 2.4784 -3.8604 -0.0146 11 7 3.7078 -3.3791 -0.0125 12 6 4.7610 -4.2081 -0.0174 13 6 6.0795 -3.7314 -0.0160 14 6 7.1156 -4.6175 -0.0217 15 6 6.8852 -5.9902 -0.0284 16 6 5.6146 -6.4875 -0.0300 17 6 4.5292 -5.6056 -0.0253 18 6 3.1878 -6.0647 -0.0272 19 7 2.9023 -7.4134 -0.0333 20 6 1.5094 -7.8673 -0.0357 21 6 0.9850 -7.9120 1.4010 22 6 -0.4700 -8.3854 1.3983 23 6 -0.5501 -9.7837 0.7824 24 6 -0.0257 -9.7389 -0.6543 25 6 1.4296 -9.2656 -0.6515 26 7 2.2160 -5.1648 -0.0176 27 1 -0.4850 0.8400 0.0004 28 1 6.2732 -2.6690 -0.0102 29 1 8.1306 -4.2487 -0.0210 30 1 7.7237 -6.6709 -0.0324 31 1 5.4482 -7.5546 -0.0356 32 1 3.6237 -8.0619 -0.0359 33 1 0.9032 -7.1768 -0.6224 34 1 1.5910 -8.6024 1.9876 35 1 1.0418 -6.9158 1.8396 36 1 -1.0757 -7.6947 0.8118 37 1 -0.8434 -8.4177 2.4218 38 1 -1.5866 -10.1211 0.7810 39 1 0.0557 -10.4743 1.3689 40 1 -0.6315 -9.0483 -1.2408 41 1 -0.0833 -10.7350 -1.0932 42 1 1.8031 -9.2337 -1.6750 43 1 2.0356 -9.9560 -0.0649 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002948710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:58 Heat of formation + Delta-G solvation = 39.649644 kcal Electronic energy + Delta-G solvation = -25133.999511 eV Core-core repulsion = 21689.785515 eV Total energy + Delta-G solvation = -3444.213995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56281 -38.82863 -36.93084 -35.47454 -32.69966 -32.14999 -30.95254 -30.82845 -29.72941 -28.39666 -25.66353 -24.12875 -23.68067 -22.69485 -22.14897 -21.05310 -20.01421 -18.95700 -17.65328 -17.34750 -16.72028 -15.86784 -14.99637 -14.90757 -14.80578 -14.71489 -14.51711 -14.17688 -14.07558 -13.93501 -13.55423 -12.99327 -12.90731 -12.66369 -12.28553 -11.98144 -11.90958 -11.53361 -11.47163 -11.25920 -11.15635 -11.09148 -11.04696 -11.02213 -10.71835 -10.36273 -10.26021 -10.19934 -9.65609 -9.38427 -8.96642 -8.82599 -8.71337 -8.21576 -7.58631 -6.69789 -6.45961 -4.14527 0.98860 1.36572 2.58100 2.83883 3.19373 3.23336 3.27373 3.34747 3.50497 4.03804 4.57909 4.63623 4.74084 4.75924 4.85983 4.94961 5.01535 5.04689 5.11251 5.18278 5.21379 5.33719 5.40368 5.40939 5.42786 5.47343 5.52952 5.62590 5.73385 5.81770 5.90101 5.97486 6.01689 6.04302 6.14102 6.16117 6.33683 6.39596 6.42143 6.54331 6.75236 6.78309 7.13160 7.23695 7.50512 7.60995 8.10359 8.47272 9.05091 9.07962 10.61385 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.004208 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.073720 B = 6652.845209 C = 9115.320186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.112 0.888 9 S 0.178 5.822 10 C 0.312 3.688 11 N -0.557 5.557 12 C 0.213 3.787 13 C -0.123 4.123 14 C -0.078 4.078 15 C -0.171 4.171 16 C -0.057 4.057 17 C -0.230 4.230 18 C 0.472 3.528 19 N -0.704 5.704 20 C 0.155 3.845 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.127 4.127 26 N -0.579 5.579 27 H 0.274 0.726 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.403 0.597 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 -18.757 0.292 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.135 4.135 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.687 4.687 8 H 0.130 0.870 9 S 0.425 5.575 10 C -0.058 4.058 11 N -0.282 5.282 12 C 0.079 3.921 13 C -0.144 4.144 14 C -0.100 4.100 15 C -0.192 4.192 16 C -0.078 4.078 17 C -0.242 4.242 18 C 0.211 3.789 19 N -0.338 5.338 20 C 0.051 3.949 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.165 4.165 26 N -0.308 5.308 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.240 0.760 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.825 -17.867 0.297 18.092 hybrid contribution 2.897 0.234 0.027 2.907 sum 5.722 -17.633 0.323 18.541 Atomic orbital electron populations 1.69941 1.06207 1.28501 1.46070 1.25163 0.95096 0.99787 0.93451 0.85956 0.79658 0.80138 0.78651 1.19975 1.20717 1.19048 1.23614 0.98142 0.89904 1.57056 0.87028 1.83611 1.00129 0.94843 1.78874 1.25871 0.97084 0.91384 0.91497 1.69425 0.97654 1.35932 1.25150 1.18915 0.94125 0.87959 0.91135 1.20636 0.90104 1.00279 1.03399 1.20794 0.98615 0.93183 0.97365 1.20543 0.96363 0.95345 1.06981 1.20508 0.92298 0.97779 0.97167 1.18807 0.93114 0.95993 1.16304 1.18566 0.88283 0.85839 0.86181 1.44344 1.08077 1.02302 1.79080 1.20968 0.82039 0.95189 0.96745 1.21915 0.95857 1.02134 0.96755 1.21496 0.96646 0.96398 1.00993 1.21570 1.00803 0.97440 0.95965 1.21472 0.95378 1.01172 0.97247 1.21822 0.97717 0.95869 1.01063 1.68010 1.34217 1.01584 1.26949 0.91595 0.85160 0.86182 0.86578 0.86944 0.76021 0.88730 0.92522 0.90892 0.91320 0.91925 0.92023 0.92223 0.91439 0.91824 0.91488 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.66 13.22 55.49 0.73 -23.92 16 2 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.22 9.23 30.94 0.29 -14.94 16 8 H 0.11 3.21 6.48 -52.49 -0.34 2.87 16 9 S 0.18 4.70 21.82 -107.50 -2.35 2.35 16 10 C 0.31 7.63 7.83 -90.87 -0.71 6.92 16 11 N -0.56 -13.61 8.40 -11.50 -0.10 -13.71 16 12 C 0.21 4.44 6.61 -84.86 -0.56 3.88 16 13 C -0.12 -2.16 10.01 -39.53 -0.40 -2.56 16 14 C -0.08 -1.09 9.95 -39.91 -0.40 -1.49 16 15 C -0.17 -2.20 9.96 -39.87 -0.40 -2.60 16 16 C -0.06 -0.79 9.53 -39.62 -0.38 -1.16 16 17 C -0.23 -4.14 5.76 -106.63 -0.61 -4.75 16 18 C 0.47 8.52 7.52 -155.07 -1.17 7.35 16 19 N -0.70 -9.33 5.14 -53.48 -0.27 -9.61 16 20 C 0.16 1.90 2.48 -67.93 -0.17 1.73 16 21 C -0.13 -1.55 5.51 -26.73 -0.15 -1.70 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 24 C -0.11 -0.96 5.92 -26.71 -0.16 -1.11 16 25 C -0.13 -1.14 5.39 -26.71 -0.14 -1.29 16 26 N -0.58 -12.40 9.26 -12.39 -0.11 -12.52 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.11 1.16 6.57 -52.48 -0.34 0.82 16 32 H 0.40 4.17 6.84 -40.82 -0.28 3.89 16 33 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -31.38 363.12 -13.00 -44.38 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.99 Total: 3.59 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -5.37 Total: -12.30 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.25 Total: -59.75 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -2.35 Total: 2.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.38 -13.00 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002948710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.030 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds