Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48493 * 109.47191 * 240.00115 * 3 2 1 5 5 H 1.48503 * 109.47121 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46903 * 119.99852 * 3 2 1 7 7 C 1.38673 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00021 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.76199 * 99.99986 * 179.97438 * 9 7 2 11 11 N 1.31425 * 126.50847 * 0.02562 * 10 9 7 12 12 N 1.28526 * 109.85430 * 180.02562 * 11 10 9 13 13 C 1.30501 * 110.13112 * 0.02562 * 12 11 10 14 14 C 1.50695 * 126.32758 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47173 * 60.02589 * 14 13 12 16 16 C 1.52997 * 109.47386 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47324 * 59.99495 * 16 15 14 18 18 C 1.53004 * 109.47301 * 300.00557 * 17 16 15 19 19 C 1.52995 * 109.47422 * 300.02419 * 14 13 12 20 20 N 1.36705 * 107.34511 * 359.73427 * 13 12 11 21 21 C 1.40206 * 127.15511 * 180.26599 * 20 13 12 22 22 C 1.38824 * 120.07013 * 64.92703 * 21 20 13 23 23 C 1.38125 * 119.93826 * 179.76593 * 22 21 20 24 24 C 1.38277 * 120.06019 * 0.51021 * 23 22 21 25 25 C 1.38279 * 120.13498 * 359.74175 * 24 23 22 26 26 C 1.38122 * 120.06576 * 0.02562 * 25 24 23 27 27 H 0.97002 * 120.00072 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47379 * 180.02562 * 14 13 12 29 29 H 1.09004 * 109.46878 * 300.00202 * 15 14 13 30 30 H 1.08993 * 109.47478 * 59.99888 * 15 14 13 31 31 H 1.09004 * 109.47164 * 299.99889 * 16 15 14 32 32 H 1.08997 * 109.47355 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47662 * 179.97438 * 17 16 15 34 34 H 1.09004 * 109.46679 * 60.00096 * 17 16 15 35 35 H 1.09004 * 109.46425 * 299.99700 * 18 17 16 36 36 H 1.08999 * 109.47076 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.46973 * 300.00117 * 19 14 13 38 38 H 1.09004 * 109.46790 * 59.99700 * 19 14 13 39 39 H 1.08001 * 120.02863 * 359.97438 * 22 21 20 40 40 H 1.07990 * 119.96747 * 180.22683 * 23 22 21 41 41 H 1.08003 * 119.93254 * 179.72389 * 24 23 22 42 42 H 1.07995 * 119.96610 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.03324 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0097 -1.2009 0.0005 8 1 3.0897 -1.2009 0.0001 9 16 1.1288 -2.7268 0.0005 10 6 2.4786 -3.8594 0.0005 11 7 3.7566 -3.5527 0.0010 12 7 4.4631 -4.6264 0.0003 13 6 3.6864 -5.6751 -0.0012 14 6 4.1308 -7.1151 -0.0030 15 6 4.9696 -7.3915 1.2464 16 6 5.4214 -8.8532 1.2444 17 6 6.2619 -9.1256 -0.0048 18 6 5.4231 -8.8492 -1.2542 19 6 4.9711 -7.3880 -1.2520 20 7 2.3953 -5.2261 0.0046 21 6 1.2284 -6.0034 0.0105 22 6 0.9369 -6.8121 1.1006 23 6 -0.2159 -7.5730 1.1057 24 6 -1.0738 -7.5379 0.0218 25 6 -0.7835 -6.7373 -1.0677 26 6 0.3653 -5.9705 -1.0764 27 1 -0.4850 0.8401 -0.0004 28 1 3.2560 -7.7653 -0.0044 29 1 5.8445 -6.7412 1.2479 30 1 4.3710 -7.1971 2.1363 31 1 4.5468 -9.5038 1.2427 32 1 6.0193 -9.0500 2.1342 33 1 6.5841 -10.1669 -0.0061 34 1 7.1365 -8.4750 -0.0031 35 1 4.5485 -9.4998 -1.2558 36 1 6.0220 -9.0428 -2.1441 37 1 4.3736 -7.1911 -2.1421 38 1 5.8460 -6.7377 -1.2506 39 1 1.6091 -6.8436 1.9453 40 1 -0.4450 -8.1995 1.9549 41 1 -1.9723 -8.1371 0.0260 42 1 -1.4552 -6.7123 -1.9129 43 1 0.5913 -5.3452 -1.9274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004093533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = 73.593149 kcal Electronic energy + Delta-G solvation = -25544.022538 eV Core-core repulsion = 22101.280443 eV Total energy + Delta-G solvation = -3442.742095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28243 -39.08713 -38.41012 -34.37000 -32.64277 -32.19079 -31.03707 -30.80939 -29.46365 -28.55453 -25.66444 -23.80494 -23.13770 -22.69915 -22.53818 -21.56052 -20.34415 -19.44244 -18.41854 -17.31123 -16.28111 -15.82274 -15.72496 -15.23104 -14.91857 -14.56307 -14.38440 -14.27237 -14.13131 -14.02848 -13.50596 -13.10866 -12.87991 -12.54466 -12.48314 -12.25633 -11.90970 -11.39421 -11.35815 -11.28862 -11.15982 -11.10727 -11.10011 -10.64881 -10.64046 -10.31627 -10.28255 -10.21350 -10.05659 -9.79067 -9.52737 -9.04287 -8.82670 -8.79331 -8.66515 -6.74914 -6.45032 -4.19015 1.07467 1.29682 2.35528 2.46934 3.23503 3.23760 3.26661 3.33570 3.58146 3.63883 4.03756 4.45678 4.63499 4.71347 4.83999 4.85721 4.98567 4.99184 5.03154 5.05394 5.11896 5.21198 5.31176 5.36992 5.42842 5.44942 5.47569 5.55370 5.62153 5.69583 5.90444 5.92862 5.95383 6.02857 6.11467 6.16281 6.17191 6.23436 6.28393 6.29009 6.39695 6.43513 6.58518 6.71756 6.80084 7.56117 7.59080 8.38551 9.06667 9.47862 10.63096 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004176 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.376974 B = 6702.635534 C = 8406.490634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.076 3.924 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.104 0.896 9 S 0.141 5.859 10 C 0.174 3.826 11 N -0.307 5.307 12 N -0.283 5.283 13 C 0.154 3.846 14 C 0.014 3.986 15 C -0.107 4.107 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.107 4.107 20 N -0.440 5.440 21 C 0.132 3.868 22 C -0.107 4.107 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.105 4.105 26 C -0.098 4.098 27 H 0.274 0.726 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -20.540 -0.137 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.133 4.133 3 Si 0.757 3.243 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.683 4.683 8 H 0.122 0.878 9 S 0.373 5.627 10 C -0.195 4.195 11 N -0.151 5.151 12 N -0.121 5.121 13 C -0.115 4.115 14 C -0.007 4.007 15 C -0.146 4.146 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.146 4.146 20 N -0.134 5.134 21 C 0.040 3.960 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.124 4.124 26 C -0.118 4.118 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.163 -19.651 -0.133 19.686 hybrid contribution 0.516 0.621 0.038 0.809 sum 1.679 -19.030 -0.095 19.104 Atomic orbital electron populations 1.69943 1.06056 1.28492 1.46855 1.25056 0.95160 0.99558 0.93495 0.85987 0.79077 0.79687 0.79526 1.19431 1.20786 1.19441 1.23179 0.97191 0.89273 1.58686 0.87821 1.83571 0.97490 0.95190 1.86422 1.28574 1.02308 0.84973 1.03645 1.74764 0.98788 1.18465 1.23095 1.73838 1.26885 0.94508 1.16885 1.24719 0.79935 0.98107 1.08752 1.19417 0.98339 0.86119 0.96812 1.21544 1.00193 0.96617 0.96241 1.21530 0.99719 0.96216 0.97948 1.21556 0.98629 1.01013 0.94602 1.21521 0.99708 0.96247 0.97937 1.21525 1.00149 0.96594 0.96324 1.43775 1.05203 1.05375 1.59082 1.17556 0.87438 0.95455 0.95506 1.21156 0.97942 0.96916 0.96708 1.20996 0.93806 0.99274 0.98765 1.21243 0.99427 0.98895 0.93672 1.21053 0.96294 0.96099 0.98947 1.21272 0.94378 0.98705 0.97401 0.91610 0.90280 0.90582 0.92132 0.92085 0.91806 0.92196 0.91704 0.92110 0.91810 0.92089 0.90606 0.85616 0.85292 0.85524 0.85080 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 13.22 55.48 0.73 -24.11 16 2 C 0.08 2.12 5.49 -17.48 -0.10 2.02 16 3 Si 0.93 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -15.29 9.37 30.89 0.29 -15.00 16 8 H 0.10 3.06 6.93 -52.49 -0.36 2.70 16 9 S 0.14 3.62 21.59 -107.50 -2.32 1.30 16 10 C 0.17 4.20 8.00 -87.86 -0.70 3.50 16 11 N -0.31 -7.90 11.04 30.78 0.34 -7.56 16 12 N -0.28 -6.39 12.18 33.01 0.40 -5.98 16 13 C 0.15 2.91 6.51 -153.88 -1.00 1.91 16 14 C 0.01 0.20 2.54 -91.77 -0.23 -0.04 16 15 C -0.11 -1.32 5.19 -26.73 -0.14 -1.46 16 16 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 17 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 18 C -0.12 -1.11 5.92 -26.76 -0.16 -1.27 16 19 C -0.11 -1.35 5.18 -26.76 -0.14 -1.49 16 20 N -0.44 -8.73 2.84 -57.59 -0.16 -8.90 16 21 C 0.13 2.17 5.03 -83.59 -0.42 1.75 16 22 C -0.11 -1.47 9.37 -39.41 -0.37 -1.84 16 23 C -0.11 -1.19 10.04 -39.61 -0.40 -1.59 16 24 C -0.11 -1.17 10.04 -39.55 -0.40 -1.57 16 25 C -0.11 -1.23 10.04 -39.61 -0.40 -1.63 16 26 C -0.10 -1.47 9.93 -39.40 -0.39 -1.86 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.08 1.02 7.05 -51.93 -0.37 0.65 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.38 370.24 -11.53 -43.91 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.21 Total: 0.18 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -4.87 Total: -21.04 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.31 Total: -46.54 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.32 Total: 1.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.38 -11.53 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004093533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.504 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds