Wall clock time and date at job start Tue Mar 31 2020 05:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.37617 * 120.00036 * 124.51327 * 3 2 1 5 5 C 1.41843 * 119.99765 * 7.09692 * 4 3 2 6 6 C 1.37790 * 126.86401 * 17.28957 * 5 4 3 7 7 N 1.35648 * 109.47400 * 179.97438 * 6 5 4 8 8 C 1.46501 * 124.73293 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47131 * 265.02647 * 8 7 6 10 10 H 1.08006 * 120.00190 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00348 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99541 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00197 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47064 * 59.99499 * 13 11 9 15 15 H 1.48496 * 109.46947 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47163 * 299.99279 * 13 11 9 17 17 C 1.38001 * 110.54098 * 359.97438 * 7 6 5 18 18 C 1.39155 * 132.96816 * 179.97438 * 17 7 6 19 19 C 1.37771 * 119.94966 * 179.34074 * 18 17 7 20 20 C 1.38733 * 120.63316 * 0.56153 * 19 18 17 21 21 C 1.37778 * 120.27962 * 359.63903 * 20 19 18 22 22 C 1.39244 * 119.68297 * 0.02562 * 21 20 19 23 23 C 1.47925 * 120.00028 * 304.51126 * 3 2 1 24 24 C 1.39585 * 119.74958 * 0.02562 * 23 3 2 25 25 C 1.38274 * 119.05580 * 179.69703 * 24 23 3 26 26 C 1.38885 * 118.53392 * 0.54602 * 25 24 23 27 27 C 1.38199 * 119.41364 * 359.45184 * 26 25 24 28 28 N 1.31802 * 120.90849 * 0.28063 * 27 26 25 29 29 H 1.07996 * 119.99805 * 187.10158 * 4 3 2 30 30 H 1.07992 * 125.26287 * 359.97438 * 6 5 4 31 31 H 1.08999 * 109.47071 * 25.02115 * 8 7 6 32 32 H 1.08995 * 109.47294 * 145.02443 * 8 7 6 33 33 H 0.96998 * 119.99441 * 180.02562 * 12 11 9 34 34 H 1.08006 * 120.02424 * 359.97438 * 18 17 7 35 35 H 1.08005 * 119.68147 * 180.17830 * 19 18 17 36 36 H 1.08000 * 119.86023 * 179.62394 * 20 19 18 37 37 H 1.08001 * 120.15992 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.47189 * 359.97438 * 24 23 3 39 39 H 1.07999 * 120.73144 * 180.29528 * 25 24 23 40 40 H 1.07998 * 120.29817 * 179.73072 * 26 25 24 41 41 H 1.08001 * 119.54394 * 180.25714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2559 0.6762 -0.9820 5 6 2.5544 1.4943 -1.9043 6 6 1.2726 1.9813 -1.7687 7 7 0.9537 2.7246 -2.8577 8 6 -0.3306 3.3996 -3.0606 9 6 -1.2378 2.5178 -3.8794 10 1 -0.8920 1.5513 -4.2155 11 6 -2.5087 2.9451 -4.2005 12 7 -2.9295 4.1221 -3.7917 13 14 -3.6329 1.8523 -5.2161 14 1 -3.8554 0.5702 -4.5007 15 1 -4.9347 2.5364 -5.4217 16 1 -3.0023 1.5813 -6.5330 17 6 2.0077 2.7563 -3.7479 18 6 2.1849 3.3648 -4.9868 19 6 3.3818 3.2281 -5.6553 20 6 4.4139 2.4777 -5.1109 21 6 4.2562 1.8641 -3.8874 22 6 3.0542 1.9998 -3.1977 23 6 3.3080 -0.7248 1.0556 24 6 2.6051 -1.4088 2.0489 25 6 3.3112 -2.0874 3.0250 26 6 4.6991 -2.0522 2.9853 27 6 5.3317 -1.3554 1.9733 28 7 4.6362 -0.7209 1.0509 29 1 4.3296 0.5834 -1.0505 30 1 0.6224 1.7994 -0.9259 31 1 -0.7932 3.5985 -2.0939 32 1 -0.1676 4.3405 -3.5860 33 1 -3.8238 4.4226 -4.0173 34 1 1.3884 3.9523 -5.4192 35 1 3.5156 3.7046 -6.6153 36 1 5.3447 2.3738 -5.6486 37 1 5.0608 1.2801 -3.4655 38 1 1.5251 -1.4116 2.0523 39 1 2.7949 -2.6294 3.8035 40 1 5.2789 -2.5685 3.7360 41 1 6.4108 -1.3301 1.9380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007155348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:45 Heat of formation + Delta-G solvation = 138.556947 kcal Electronic energy + Delta-G solvation = -25665.152626 eV Core-core repulsion = 22089.783622 eV Total energy + Delta-G solvation = -3575.369004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.122 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.02200 -40.10019 -37.19636 -36.48363 -34.57006 -33.37049 -32.43667 -32.00635 -30.17439 -29.77680 -28.28389 -26.86713 -24.63754 -23.58376 -23.07095 -22.57467 -21.67723 -20.89337 -19.37833 -17.83996 -16.91597 -16.54080 -16.31052 -15.92941 -15.76008 -15.26273 -14.92005 -14.52968 -14.32589 -14.15333 -13.98896 -13.62680 -13.45371 -13.28797 -13.09481 -12.80044 -12.71690 -12.49170 -12.24007 -11.85573 -11.70456 -11.52848 -11.40883 -11.22710 -11.02065 -10.89366 -10.60579 -10.43653 -10.28966 -9.98676 -9.71519 -9.52565 -9.28355 -8.76189 -8.39357 -7.83192 -6.87816 -6.36788 -4.48165 0.44086 1.19357 1.38996 1.71019 2.11290 2.94832 3.14514 3.17290 3.21172 3.25762 3.49999 3.56775 3.98237 4.09965 4.20538 4.31870 4.57576 4.68334 4.77097 4.95049 4.97781 5.01843 5.07890 5.18400 5.25861 5.32709 5.45367 5.55513 5.64849 5.69896 5.90262 5.94378 6.00250 6.10887 6.13991 6.30588 6.35774 6.43936 6.61988 6.67252 6.77640 6.81995 6.91855 7.06379 7.22432 7.51520 7.69077 7.72192 7.76955 7.83694 7.93240 8.57332 9.20369 10.69007 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.003552 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.752014 B = 7880.034001 C = 9896.939081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.265 3.735 3 C -0.138 4.138 4 C 0.126 3.874 5 C -0.245 4.245 6 C 0.141 3.859 7 N -0.425 5.425 8 C 0.228 3.772 9 C -0.546 4.546 10 H 0.066 0.934 11 C 0.070 3.930 12 N -0.888 5.888 13 Si 0.906 3.094 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.091 3.909 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.089 4.089 22 C -0.075 4.075 23 C 0.215 3.785 24 C -0.176 4.176 25 C -0.066 4.066 26 C -0.196 4.196 27 C 0.112 3.888 28 N -0.489 5.489 29 H 0.151 0.849 30 H 0.174 0.826 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.270 0.730 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.891 -6.979 7.613 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.047 4.047 3 C -0.144 4.144 4 C 0.101 3.899 5 C -0.252 4.252 6 C -0.001 4.001 7 N -0.096 5.096 8 C 0.110 3.890 9 C -0.584 4.584 10 H 0.084 0.916 11 C -0.135 4.135 12 N -0.525 5.525 13 Si 0.733 3.267 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.198 1.198 17 C -0.014 4.014 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.158 4.158 21 C -0.107 4.107 22 C -0.078 4.078 23 C 0.079 3.921 24 C -0.196 4.196 25 C -0.092 4.092 26 C -0.216 4.216 27 C -0.046 4.046 28 N -0.199 5.199 29 H 0.168 0.832 30 H 0.191 0.809 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.056 -6.183 6.863 17.664 hybrid contribution -0.934 -1.012 0.251 1.400 sum 14.122 -7.195 7.114 17.373 Atomic orbital electron populations 1.81367 1.11664 1.09860 1.08121 1.25452 0.92550 0.93047 0.93659 1.16130 0.83529 1.12389 1.02349 1.21109 0.99498 0.83769 0.85514 1.18212 0.95552 1.12718 0.98697 1.23313 0.94634 0.90846 0.91286 1.44947 1.13749 1.37712 1.13239 1.19952 0.76136 0.93450 0.99433 1.21219 0.98481 1.03752 1.34943 0.91627 1.24925 0.97609 0.95311 0.95634 1.69903 1.19269 1.18604 1.44745 0.86400 0.79375 0.80475 0.80477 1.19766 1.20796 1.19771 1.18352 0.87927 1.01564 0.93548 1.20263 0.98184 1.00816 0.92486 1.20730 0.92828 1.00528 0.99809 1.20822 0.99006 0.99889 0.96091 1.20318 0.95459 1.00242 0.94710 1.18968 0.94288 0.99994 0.94555 1.19207 0.88963 0.92259 0.91709 1.22054 1.01260 0.99984 0.96352 1.21461 0.94267 0.96168 0.97290 1.22070 0.95256 1.03044 1.01196 1.22650 1.00088 0.92198 0.89691 1.67633 1.06894 1.19530 1.25795 0.83190 0.80914 0.93058 0.93022 0.92012 0.85644 0.86117 0.86361 0.86182 0.85275 0.85072 0.85121 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.27 17.38 41.84 0.73 -7.54 16 2 C 0.27 4.45 10.66 -22.47 -0.24 4.21 16 3 C -0.14 -2.00 5.91 -104.23 -0.62 -2.62 16 4 C 0.13 1.80 9.58 -38.43 -0.37 1.43 16 5 C -0.24 -4.21 5.93 -104.87 -0.62 -4.83 16 6 C 0.14 2.76 9.85 -16.03 -0.16 2.61 16 7 N -0.42 -9.13 2.73 -115.03 -0.31 -9.45 16 8 C 0.23 5.54 5.70 -5.19 -0.03 5.51 16 9 C -0.55 -14.65 9.39 -34.44 -0.32 -14.98 16 10 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 11 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 12 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 13 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 17 C 0.09 1.80 6.78 -83.95 -0.57 1.23 16 18 C -0.10 -1.76 9.96 -39.41 -0.39 -2.15 16 19 C -0.12 -1.76 10.01 -39.57 -0.40 -2.16 16 20 C -0.14 -1.89 10.03 -39.57 -0.40 -2.28 16 21 C -0.09 -1.29 10.09 -39.38 -0.40 -1.69 16 22 C -0.07 -1.31 6.34 -104.91 -0.66 -1.97 16 23 C 0.21 2.82 6.72 -82.97 -0.56 2.26 16 24 C -0.18 -2.09 9.47 -39.07 -0.37 -2.46 16 25 C -0.07 -0.62 10.16 -39.33 -0.40 -1.02 16 26 C -0.20 -1.63 10.11 -39.36 -0.40 -2.03 16 27 C 0.11 1.05 11.17 -17.58 -0.20 0.85 16 28 N -0.49 -5.94 9.41 -9.81 -0.09 -6.03 16 29 H 0.15 1.82 7.50 -52.49 -0.39 1.43 16 30 H 0.17 3.41 4.91 -52.49 -0.26 3.15 16 31 H 0.05 1.30 8.11 -51.93 -0.42 0.88 16 32 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.13 2.30 8.06 -52.48 -0.42 1.87 16 35 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 1.55 7.15 -52.49 -0.38 1.17 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -29.82 365.32 -10.03 -39.85 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.38 Total: 3.80 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -7.19 Total: -18.30 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 1.06 Total: -46.92 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.82 -10.03 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007155348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.405 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds