Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99726 * 2 1 4 4 H 1.48501 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47301 * 299.99207 * 3 2 1 6 6 H 1.48501 * 109.47701 * 59.99610 * 3 2 1 7 7 C 1.37873 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00302 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.46957 * 111.00047 * 170.00191 * 10 9 7 12 12 C 1.53056 * 109.36301 * 183.19216 * 11 10 9 13 13 N 1.46952 * 109.36338 * 301.59490 * 12 11 10 14 14 C 1.46897 * 110.99767 * 183.19036 * 13 12 11 15 15 N 1.46500 * 109.46967 * 155.00038 * 14 13 12 16 16 C 1.34515 * 124.46351 * 270.02159 * 15 14 13 17 17 O 1.21451 * 125.71049 * 0.02562 * 16 15 14 18 18 C 1.47817 * 108.58464 * 179.97438 * 16 15 14 19 19 C 1.38568 * 134.30409 * 179.97438 * 18 16 15 20 20 C 1.38607 * 119.72317 * 180.02562 * 19 18 16 21 21 C 1.38235 * 120.45591 * 0.02562 * 20 19 18 22 22 C 1.38603 * 120.46254 * 0.02562 * 21 20 19 23 23 C 1.38571 * 119.71830 * 359.97438 * 22 21 20 24 24 C 1.34534 * 124.45883 * 90.00405 * 15 14 13 25 25 O 1.21448 * 125.70556 * 359.97438 * 24 15 14 26 26 C 1.46957 * 110.87856 * 59.32428 * 13 12 11 27 27 C 1.46956 * 111.00428 * 293.80444 * 10 9 7 28 28 H 0.97002 * 120.00046 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47072 * 60.00122 * 9 7 2 30 30 H 1.08996 * 109.47226 * 300.00126 * 9 7 2 31 31 H 1.08994 * 109.49176 * 63.22006 * 11 10 9 32 32 H 1.09004 * 109.50204 * 303.16841 * 11 10 9 33 33 H 1.09002 * 109.48258 * 181.62822 * 12 11 10 34 34 H 1.09005 * 109.48826 * 61.56882 * 12 11 10 35 35 H 1.09005 * 109.47294 * 35.00290 * 14 13 12 36 36 H 1.08999 * 109.47321 * 275.00066 * 14 13 12 37 37 H 1.08001 * 120.13440 * 0.05519 * 19 18 16 38 38 H 1.07994 * 119.77235 * 180.27788 * 20 19 18 39 39 H 1.08001 * 119.76462 * 179.97438 * 21 20 19 40 40 H 1.07995 * 120.14506 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.49054 * 60.64394 * 26 13 12 42 42 H 1.09002 * 109.48710 * 180.70731 * 26 13 12 43 43 H 1.08998 * 109.48636 * 296.77739 * 27 10 9 44 44 H 1.08996 * 109.48705 * 56.83802 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5209 -4.8940 0.2387 12 6 2.5565 -6.0187 0.3105 13 7 3.3195 -6.0593 -0.9448 14 6 4.2741 -7.1758 -0.9447 15 7 4.5695 -7.5658 -2.3256 16 6 3.8799 -8.4887 -3.0200 17 8 2.9281 -9.1207 -2.6081 18 6 4.4736 -8.6041 -4.3687 19 6 4.1924 -9.3717 -5.4876 20 6 4.9673 -9.2333 -6.6285 21 6 6.0181 -8.3357 -6.6571 22 6 6.3118 -7.5620 -5.5453 23 6 5.5457 -7.6896 -4.3977 24 6 5.5660 -7.0478 -3.0663 25 8 6.3508 -6.1956 -2.7019 26 6 4.0042 -4.7810 -1.1830 27 6 2.9688 -3.6562 -1.2547 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 0.8254 -5.0915 -0.5769 32 1 0.9730 -4.8435 1.1797 33 1 2.0485 -6.9718 0.4582 34 1 3.2355 -5.8353 1.1432 35 1 3.8421 -8.0232 -0.4123 36 1 5.1947 -6.8668 -0.4496 37 1 3.3725 -10.0746 -5.4708 38 1 4.7460 -9.8279 -7.5024 39 1 6.6149 -8.2372 -7.5519 40 1 7.1337 -6.8620 -5.5734 41 1 4.6998 -4.5834 -0.3673 42 1 4.5519 -4.8317 -2.1240 43 1 2.2897 -3.8397 -2.0873 44 1 3.4766 -2.7032 -1.4024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019313312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = 9.508212 kcal Electronic energy + Delta-G solvation = -27866.373269 eV Core-core repulsion = 23978.099372 eV Total energy + Delta-G solvation = -3888.273897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50397 -39.13206 -38.76429 -38.36761 -36.06683 -34.90132 -32.61434 -31.67631 -31.54409 -30.47112 -28.45693 -26.33457 -25.35255 -24.43567 -23.27673 -22.64904 -22.34709 -21.39267 -20.10668 -19.25552 -18.01176 -17.50827 -17.08293 -16.61966 -16.29716 -15.56500 -15.49446 -15.08317 -14.79382 -14.66623 -14.52352 -14.41022 -14.23717 -14.18412 -13.85872 -13.40243 -13.16330 -13.04175 -12.74887 -12.28596 -12.10214 -12.04854 -11.76873 -11.22173 -10.91739 -10.78792 -10.78266 -10.64335 -10.53676 -10.45741 -10.41075 -10.05283 -9.70561 -9.63482 -9.60298 -9.16352 -8.44519 -8.35770 -7.23889 -6.01584 -4.02927 -0.24951 0.56317 1.73485 2.09550 2.76080 3.21438 3.31986 3.33456 3.39254 3.44532 3.93675 4.08549 4.21150 4.43619 4.44367 4.63500 4.73474 4.80144 4.93178 5.00416 5.04271 5.20630 5.32556 5.34140 5.37052 5.51090 5.53565 5.67026 5.70889 5.75880 5.78977 5.89722 6.03862 6.14318 6.16377 6.40623 6.46366 6.56601 6.68123 6.98472 7.02452 7.07907 7.32685 7.37008 7.50725 7.81161 8.08990 8.20383 8.55546 9.04925 9.61365 11.09365 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.002803 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.401729 B = 9986.111894 C =10708.906466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.068 3.932 13 N -0.554 5.554 14 C 0.278 3.722 15 N -0.566 5.566 16 C 0.580 3.420 17 O -0.458 6.458 18 C -0.137 4.137 19 C -0.047 4.047 20 C -0.098 4.098 21 C -0.098 4.098 22 C -0.046 4.046 23 C -0.137 4.137 24 C 0.574 3.426 25 O -0.459 6.459 26 C 0.058 3.942 27 C 0.069 3.931 28 H 0.260 0.740 29 H -0.009 1.009 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.027 0.973 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.188 -21.966 -12.226 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.060 4.060 13 N -0.281 5.281 14 C 0.068 3.932 15 N -0.309 5.309 16 C 0.368 3.632 17 O -0.329 6.329 18 C -0.140 4.140 19 C -0.066 4.066 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.065 4.065 23 C -0.141 4.141 24 C 0.362 3.638 25 O -0.329 6.329 26 C -0.069 4.069 27 C -0.059 4.059 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.914 -21.683 -11.669 27.354 hybrid contribution 0.229 1.038 -0.058 1.065 sum 12.143 -20.645 -11.727 26.668 Atomic orbital electron populations 1.69976 1.06061 1.26650 1.51140 1.24996 0.94867 0.99332 0.95465 0.86447 0.80102 0.83430 0.77492 1.19642 1.21109 1.21014 1.21192 0.93500 0.89934 1.49875 0.91858 1.19705 0.90016 0.87262 0.96147 1.62301 1.28159 1.02768 1.33129 1.22060 0.94590 0.89801 1.00757 1.22140 0.95922 0.99283 0.88626 1.61819 1.26117 1.03618 1.36569 1.22056 0.96724 0.95625 0.78754 1.46680 1.30310 1.37773 1.16131 1.18288 0.81473 0.78418 0.84994 1.90800 1.23544 1.44251 1.74272 1.20647 0.98146 0.99874 0.95369 1.20811 0.98619 0.96782 0.90373 1.21463 0.94467 0.97823 0.97840 1.21464 0.97171 0.94815 0.98185 1.20822 0.97883 0.97560 0.90212 1.20622 0.98654 0.99482 0.95360 1.18392 0.79811 0.80633 0.84922 1.90828 1.38440 1.27687 1.75980 1.22369 0.96015 0.87876 1.00680 1.21973 0.95302 0.97392 0.91275 0.92989 0.99077 0.95132 0.95047 0.90606 0.90632 0.93570 0.87602 0.90447 0.84052 0.84124 0.84112 0.84013 0.93605 0.91162 0.95483 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.46 8.47 -34.44 -0.29 -14.75 16 8 H 0.06 1.80 7.13 -52.49 -0.37 1.42 16 9 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 10 N -0.54 -12.01 4.70 -235.91 -1.11 -13.12 16 11 C 0.06 1.07 5.61 -3.76 -0.02 1.05 16 12 C 0.07 1.04 5.53 -3.77 -0.02 1.02 16 13 N -0.55 -8.71 4.81 -238.37 -1.15 -9.86 16 14 C 0.28 3.60 5.59 -63.32 -0.35 3.25 16 15 N -0.57 -7.36 2.84 -120.90 -0.34 -7.70 16 16 C 0.58 7.47 8.02 -12.46 -0.10 7.37 16 17 O -0.46 -6.89 17.68 5.41 0.10 -6.79 16 18 C -0.14 -1.40 6.41 -104.83 -0.67 -2.07 16 19 C -0.05 -0.34 10.09 -39.32 -0.40 -0.74 16 20 C -0.10 -0.49 10.04 -39.45 -0.40 -0.88 16 21 C -0.10 -0.50 10.03 -39.45 -0.40 -0.89 16 22 C -0.05 -0.34 10.09 -39.32 -0.40 -0.74 16 23 C -0.14 -1.42 6.40 -104.83 -0.67 -2.09 16 24 C 0.57 7.40 7.28 -12.45 -0.09 7.31 16 25 O -0.46 -6.89 16.36 5.41 0.09 -6.80 16 26 C 0.06 1.01 5.42 -3.77 -0.02 0.99 16 27 C 0.07 1.44 5.43 -3.77 -0.02 1.42 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 30 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.20 7.58 -51.93 -0.39 0.81 16 36 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 37 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 39 H 0.14 0.31 8.06 -52.49 -0.42 -0.12 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 42 H 0.07 1.21 5.96 -51.93 -0.31 0.90 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.96 6.79 -51.93 -0.35 1.61 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -34.02 365.60 -11.18 -45.20 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.02 Total: -3.86 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -3.97 Total: 6.85 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -1.86 Total: -57.03 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.18 Total: -13.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.02 -11.18 -45.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019313312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.705 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds