Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99603 * 2 1 4 4 H 1.48494 * 109.47304 * 269.99727 * 3 2 1 5 5 H 1.48498 * 109.47357 * 29.99691 * 3 2 1 6 6 H 1.48501 * 109.47219 * 149.99627 * 3 2 1 7 7 C 1.37878 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99821 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00151 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47159 * 185.00548 * 9 7 2 11 11 C 1.46952 * 110.99889 * 295.18004 * 10 9 7 12 12 C 1.53059 * 109.36120 * 183.18626 * 11 10 9 13 13 N 1.46950 * 109.36356 * 301.59501 * 12 11 10 14 14 C 1.46900 * 110.99939 * 183.18626 * 13 12 11 15 15 N 1.46505 * 109.47367 * 154.99976 * 14 13 12 16 16 C 1.34425 * 124.27982 * 270.00722 * 15 14 13 17 17 O 1.21304 * 126.24168 * 359.94999 * 16 15 14 18 18 C 1.49990 * 107.51231 * 179.97438 * 16 15 14 19 19 O 1.21357 * 127.58894 * 180.02562 * 18 16 15 20 20 C 1.47464 * 104.82106 * 359.97438 * 18 16 15 21 21 C 1.39475 * 133.06067 * 180.02562 * 20 18 16 22 22 C 1.38005 * 119.70283 * 180.27751 * 21 20 18 23 23 C 1.38501 * 120.06475 * 359.41866 * 22 21 20 24 24 C 1.38219 * 120.69677 * 0.61077 * 23 22 21 25 25 C 1.38881 * 120.20567 * 359.67076 * 24 23 22 26 26 C 1.46960 * 110.88122 * 59.32674 * 13 12 11 27 27 C 1.46957 * 110.99578 * 58.97783 * 10 9 7 28 28 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47356 * 65.00463 * 9 7 2 30 30 H 1.09007 * 109.46827 * 305.00807 * 9 7 2 31 31 H 1.08999 * 109.49238 * 63.22265 * 11 10 9 32 32 H 1.08995 * 109.49177 * 303.14948 * 11 10 9 33 33 H 1.09003 * 109.48635 * 181.63001 * 12 11 10 34 34 H 1.08996 * 109.48956 * 61.57001 * 12 11 10 35 35 H 1.09011 * 109.46982 * 35.00718 * 14 13 12 36 36 H 1.08998 * 109.47526 * 275.00593 * 14 13 12 37 37 H 1.08004 * 120.14413 * 0.02562 * 21 20 18 38 38 H 1.08000 * 119.96287 * 179.72318 * 22 21 20 39 39 H 1.07999 * 119.64862 * 180.32698 * 23 22 21 40 40 H 1.07998 * 119.90321 * 179.69954 * 24 23 22 41 41 H 1.08999 * 109.49227 * 60.63817 * 26 13 12 42 42 H 1.09003 * 109.48813 * 180.70904 * 26 13 12 43 43 H 1.09006 * 109.49128 * 296.77594 * 27 10 9 44 44 H 1.09003 * 109.49142 * 56.84624 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2011 -3.6130 0.1220 11 6 3.0790 -3.6870 -1.0542 12 6 3.9977 -4.9045 -0.9258 13 7 4.7856 -4.7922 0.3095 14 6 5.7356 -5.9061 0.4311 15 7 6.8621 -5.4974 1.2739 16 6 7.9853 -4.9228 0.8100 17 8 8.2317 -4.6622 -0.3488 18 6 8.8786 -4.6632 1.9866 19 8 9.9812 -4.1562 1.9813 20 6 8.1218 -5.1585 3.1513 21 6 8.3991 -5.2050 4.5174 22 6 7.4728 -5.7468 5.3851 23 6 6.2687 -6.2307 4.9011 24 6 5.9841 -6.1899 3.5491 25 6 6.9042 -5.6544 2.6573 26 6 3.9077 -4.7182 1.4858 27 6 2.9890 -3.5008 1.3574 28 1 -0.4851 0.8400 -0.0004 29 1 0.6938 -2.5970 -0.9310 30 1 0.5585 -2.5188 0.8421 31 1 3.6821 -2.7812 -1.1154 32 1 2.4728 -3.7824 -1.9550 33 1 4.6696 -4.9450 -1.7832 34 1 3.3957 -5.8124 -0.8920 35 1 6.1026 -6.1802 -0.5581 36 1 5.2355 -6.7625 0.8832 37 1 9.3363 -4.8224 4.8939 38 1 7.6850 -5.7890 6.4432 39 1 5.5464 -6.6484 5.5868 40 1 5.0432 -6.5753 3.1851 41 1 3.3046 -5.6240 1.5471 42 1 4.5140 -4.6229 2.3866 43 1 3.5912 -2.5927 1.3236 44 1 2.3171 -3.4602 2.2148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019313388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = 11.193208 kcal Electronic energy + Delta-G solvation = -28306.271127 eV Core-core repulsion = 24418.070297 eV Total energy + Delta-G solvation = -3888.200830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12725 -39.10418 -38.89453 -38.32419 -36.41290 -34.96909 -32.51522 -31.77494 -30.57554 -30.35598 -28.41356 -27.12789 -25.44331 -23.86700 -23.13709 -22.74609 -21.98858 -21.62533 -20.32068 -19.24609 -17.93005 -17.60723 -16.89275 -16.60409 -16.35415 -15.73936 -15.49945 -15.04371 -14.76412 -14.73906 -14.60374 -14.42749 -14.26720 -14.04977 -13.84780 -13.39192 -13.16274 -12.98800 -12.57829 -12.35517 -12.23027 -12.00017 -11.90482 -11.55165 -11.11133 -11.08724 -10.91781 -10.80971 -10.59848 -10.43441 -10.16531 -9.87893 -9.75857 -9.60347 -9.49820 -8.52759 -8.45164 -8.33175 -7.25239 -6.05201 -4.14019 -0.22033 0.84685 1.43003 2.08018 2.75050 3.20596 3.27446 3.32956 3.34318 3.38769 3.90747 4.09338 4.21105 4.40137 4.45015 4.63295 4.77794 4.84931 4.92696 4.99110 5.05482 5.25455 5.26025 5.36167 5.43584 5.46075 5.63757 5.71814 5.80695 5.83528 5.94512 5.99772 6.02465 6.14459 6.23034 6.48965 6.49352 6.67685 6.69982 6.77348 6.99884 7.05096 7.24721 7.42760 7.48672 7.86868 7.98211 8.20319 8.25907 8.96227 9.53389 11.00037 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.003369 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.802531 B = 8309.638172 C = 8393.776414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.188 3.812 10 N -0.543 5.543 11 C 0.063 3.937 12 C 0.066 3.934 13 N -0.552 5.552 14 C 0.277 3.723 15 N -0.536 5.536 16 C 0.498 3.502 17 O -0.441 6.441 18 C 0.392 3.608 19 O -0.377 6.377 20 C -0.243 4.243 21 C -0.005 4.005 22 C -0.161 4.161 23 C -0.041 4.041 24 C -0.153 4.153 25 C 0.205 3.795 26 C 0.055 3.945 27 C 0.066 3.934 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.673 -17.347 9.912 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.062 3.938 10 N -0.267 5.267 11 C -0.066 4.066 12 C -0.061 4.061 13 N -0.279 5.279 14 C 0.067 3.933 15 N -0.261 5.261 16 C 0.282 3.718 17 O -0.310 6.310 18 C 0.262 3.738 19 O -0.246 6.246 20 C -0.248 4.248 21 C -0.024 4.024 22 C -0.180 4.180 23 C -0.059 4.059 24 C -0.174 4.174 25 C 0.108 3.892 26 C -0.073 4.073 27 C -0.063 4.063 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.190 -16.804 9.037 23.196 hybrid contribution 0.182 1.175 -0.041 1.190 sum 13.372 -15.629 8.996 22.450 Atomic orbital electron populations 1.69940 1.06008 1.26862 1.50198 1.24942 0.94737 0.99135 0.94830 0.86659 0.79949 0.83594 0.78243 1.20586 1.21121 1.19941 1.21749 0.93400 0.92031 1.51672 0.92390 1.19727 0.90767 0.85473 0.97798 1.62726 1.16846 1.46414 1.00738 1.21939 0.94150 0.95829 0.94692 1.22208 0.94792 0.99063 0.90059 1.61784 1.19022 1.42730 1.04347 1.22094 0.84587 0.91300 0.95309 1.45772 1.17463 1.57306 1.05564 1.21007 0.83127 0.77735 0.89970 1.90800 1.75424 1.46128 1.18633 1.22419 0.85877 0.75978 0.89502 1.90592 1.17240 1.29481 1.87287 1.20484 0.97522 1.11370 0.95378 1.20820 0.98939 0.92755 0.89863 1.21116 0.94399 1.02294 1.00227 1.21242 0.96292 0.94239 0.94153 1.20461 0.99592 1.04959 0.92431 1.18496 0.94178 0.93557 0.83007 1.22457 0.93797 0.99226 0.91793 1.21895 0.94811 0.95502 0.94115 0.92805 0.95429 0.94723 0.93323 0.90974 0.90750 0.94041 0.87736 0.91097 0.84573 0.84601 0.84401 0.84737 0.94251 0.91149 0.93222 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.55 -15.02 7.66 -34.44 -0.26 -15.28 16 8 H 0.06 1.61 5.82 -52.49 -0.31 1.31 16 9 C 0.19 4.73 5.14 -4.98 -0.03 4.71 16 10 N -0.54 -11.19 4.92 -235.90 -1.16 -12.35 16 11 C 0.06 1.18 5.32 -3.77 -0.02 1.16 16 12 C 0.07 0.97 5.53 -3.77 -0.02 0.95 16 13 N -0.55 -7.95 4.81 -238.36 -1.15 -9.10 16 14 C 0.28 3.12 5.62 -63.31 -0.36 2.76 16 15 N -0.54 -6.44 2.95 -116.80 -0.34 -6.78 16 16 C 0.50 7.13 8.16 -11.49 -0.09 7.04 16 17 O -0.44 -7.61 17.69 5.53 0.10 -7.52 16 18 C 0.39 5.20 7.97 -30.89 -0.25 4.95 16 19 O -0.38 -5.71 18.03 5.49 0.10 -5.61 16 20 C -0.24 -2.58 6.33 -104.85 -0.66 -3.24 16 21 C -0.01 -0.04 10.11 -39.21 -0.40 -0.44 16 22 C -0.16 -0.99 10.04 -39.57 -0.40 -1.39 16 23 C -0.04 -0.25 10.02 -39.49 -0.40 -0.64 16 24 C -0.15 -1.22 8.27 -39.35 -0.33 -1.54 16 25 C 0.21 2.11 6.06 -83.40 -0.51 1.61 16 26 C 0.05 0.78 5.05 -3.76 -0.02 0.77 16 27 C 0.07 1.24 5.24 -3.76 -0.02 1.22 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.05 1.06 6.78 -51.93 -0.35 0.70 16 32 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 33 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.13 7.58 -51.92 -0.39 0.74 16 36 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 37 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.13 0.92 7.17 -52.49 -0.38 0.54 16 41 H 0.04 0.52 8.12 -51.93 -0.42 0.09 16 42 H 0.07 0.92 5.50 -51.93 -0.29 0.63 16 43 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -32.56 360.72 -10.94 -43.50 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.80 Total: -3.34 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -3.85 Total: 4.38 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -1.91 Total: -53.55 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.20 Total: -13.13 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.56 -10.94 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019313388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.698 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds