Wall clock time and date at job start Tue Mar 31 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34486 * 125.35827 * 2 1 4 4 C 1.46728 * 106.50353 * 179.97438 * 3 2 1 5 5 C 1.46309 * 127.06239 * 180.02562 * 4 3 2 6 6 N 1.31030 * 120.00035 * 179.97438 * 5 4 3 7 7 N 1.40103 * 119.99772 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99738 * 179.97438 * 7 6 5 9 9 O 1.22069 * 119.99893 * 0.02562 * 8 7 6 10 10 C 1.40081 * 119.99902 * 179.97438 * 8 7 6 11 11 H 1.08001 * 120.00049 * 0.02562 * 10 8 7 12 12 C 1.40116 * 119.99908 * 180.02562 * 10 8 7 13 13 N 1.30658 * 119.99809 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99887 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.46920 * 60.00089 * 14 12 10 16 16 H 1.48503 * 109.46824 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46804 * 299.99731 * 14 12 10 18 18 C 1.39225 * 105.87717 * 359.74462 * 4 3 2 19 19 C 1.50697 * 125.99862 * 180.24635 * 18 4 3 20 20 N 1.34792 * 107.99362 * 0.41036 * 18 4 3 21 21 C 1.40135 * 124.82758 * 179.83645 * 20 18 4 22 22 C 1.38831 * 120.07850 * 269.45115 * 21 20 18 23 23 C 1.38120 * 119.95379 * 179.69903 * 22 21 20 24 24 C 1.38304 * 120.11288 * 0.59584 * 23 22 21 25 25 C 1.38251 * 120.16399 * 359.67926 * 24 23 22 26 26 C 1.38323 * 120.04462 * 0.02562 * 25 24 23 27 27 F 1.35099 * 120.06564 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46843 * 270.02861 * 1 2 3 29 29 H 1.08998 * 109.46539 * 30.02558 * 1 2 3 30 30 H 1.08997 * 109.46937 * 150.02852 * 1 2 3 31 31 H 1.08000 * 126.75059 * 359.93918 * 3 2 1 32 32 H 1.07997 * 120.00443 * 359.96535 * 5 4 3 33 33 H 0.96998 * 120.00224 * 359.97438 * 7 6 5 34 34 H 0.97003 * 119.99765 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47215 * 270.18742 * 19 18 4 36 36 H 1.08997 * 109.47327 * 30.19558 * 19 18 4 37 37 H 1.09007 * 109.46515 * 150.19428 * 19 18 4 38 38 H 1.07998 * 120.02331 * 359.97438 * 22 21 20 39 39 H 1.07997 * 119.94685 * 180.29414 * 23 22 21 40 40 H 1.08001 * 119.91943 * 179.70117 * 24 23 22 41 41 H 1.07997 * 119.98364 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2853 1.0968 0.0000 4 6 3.6739 0.6226 0.0006 5 6 4.8856 1.4425 0.0014 6 7 6.0642 0.8698 0.0024 7 7 7.2245 1.6550 0.0026 8 6 8.4367 1.0659 0.0041 9 8 8.5236 -0.1517 0.0049 10 6 9.5969 1.8510 0.0038 11 1 9.5200 2.9282 0.0027 12 6 10.8571 1.2386 0.0049 13 7 10.9501 -0.0647 0.0057 14 14 12.4043 2.2854 0.0051 15 1 12.4212 3.1433 1.2170 16 1 13.5988 1.4032 0.0057 17 1 12.4226 3.1418 -1.2080 18 6 3.6015 -0.7677 0.0069 19 6 4.7731 -1.7156 0.0152 20 7 2.2997 -1.1170 0.0007 21 6 1.8247 -2.4354 0.0009 22 6 1.5845 -3.0887 -1.2003 23 6 1.1223 -4.3902 -1.1971 24 6 0.8867 -5.0399 0.0009 25 6 1.1188 -4.3921 1.1999 26 6 1.5875 -3.0906 1.2045 27 9 1.8140 -2.4569 2.3759 28 1 -0.3633 0.0005 1.0277 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9535 2.1246 -0.0009 32 1 4.8088 2.5198 0.0010 33 1 7.1554 2.6225 0.0016 34 1 11.8226 -0.4887 0.0068 35 1 5.0609 -1.9463 -1.0105 36 1 5.6125 -1.2512 0.5325 37 1 4.4929 -2.6350 0.5294 38 1 1.7631 -2.5810 -2.1366 39 1 0.9400 -4.8999 -2.1316 40 1 0.5207 -6.0560 -0.0003 41 1 0.9342 -4.9023 2.1337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028216564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:45 Heat of formation + Delta-G solvation = 11.391909 kcal Electronic energy + Delta-G solvation = -26792.684316 eV Core-core repulsion = 22781.031797 eV Total energy + Delta-G solvation = -4011.652519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.11960 -42.49270 -39.73303 -39.46406 -36.93867 -34.75471 -34.23533 -33.76236 -32.06603 -31.69985 -30.09444 -29.81636 -28.51869 -25.63403 -24.56788 -23.90279 -23.07802 -21.84728 -21.15931 -20.18981 -19.02625 -18.58288 -17.99527 -17.74181 -17.56862 -17.08602 -16.80916 -16.07456 -15.85898 -15.74339 -15.20697 -15.03728 -14.90368 -14.67274 -14.46920 -14.34763 -14.14553 -13.95390 -13.43388 -13.34212 -13.27507 -13.17614 -13.11663 -13.00746 -12.82083 -12.69080 -12.61407 -12.42965 -12.22726 -12.05731 -10.97636 -10.77360 -10.21372 -10.17977 -9.92637 -9.88677 -9.20210 -8.46545 -8.39949 -7.07049 -0.16654 0.03827 0.55592 1.31943 1.38562 1.43926 1.55583 1.74836 2.14236 2.26922 2.40247 2.44310 2.54168 3.02981 3.64548 3.68299 3.70310 3.89494 3.92827 4.02310 4.17515 4.19450 4.20248 4.43132 4.56051 4.57928 4.66746 4.70285 4.75277 4.88092 4.93291 4.97332 5.02822 5.10071 5.15637 5.18612 5.27431 5.37014 5.41694 5.67900 5.85642 5.93829 6.09035 6.13603 6.47173 6.69549 7.07074 7.54339 8.44537 8.65077 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.002598 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.032497 B =10777.000821 C =11603.397795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.164 4.164 4 C -0.158 4.158 5 C 0.107 3.893 6 N -0.273 5.273 7 N -0.601 5.601 8 C 0.547 3.453 9 O -0.617 6.617 10 C -0.564 4.564 11 H 0.092 0.908 12 C 0.030 3.970 13 N -0.800 5.800 14 Si 1.009 2.991 15 H -0.252 1.252 16 H -0.270 1.270 17 H -0.251 1.251 18 C 0.060 3.940 19 C -0.071 4.071 20 N -0.399 5.399 21 C 0.051 3.949 22 C -0.085 4.085 23 C -0.110 4.110 24 C -0.066 4.066 25 C -0.146 4.146 26 C 0.082 3.918 27 F -0.149 7.149 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.174 0.826 32 H 0.133 0.867 33 H 0.380 0.620 34 H 0.281 0.719 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.140 0.860 39 H 0.172 0.828 40 H 0.180 0.820 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.650 -5.825 -1.926 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.189 4.189 4 C -0.167 4.167 5 C -0.102 4.102 6 N -0.081 5.081 7 N -0.346 5.346 8 C 0.356 3.644 9 O -0.503 6.503 10 C -0.600 4.600 11 H 0.110 0.890 12 C -0.188 4.188 13 N -0.428 5.428 14 Si 0.827 3.173 15 H -0.176 1.176 16 H -0.194 1.194 17 H -0.175 1.175 18 C -0.056 4.056 19 C -0.129 4.129 20 N -0.074 5.074 21 C -0.038 4.038 22 C -0.103 4.103 23 C -0.128 4.128 24 C -0.084 4.084 25 C -0.165 4.165 26 C 0.062 3.938 27 F -0.128 7.128 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.191 0.809 32 H 0.150 0.850 33 H 0.217 0.783 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.190 0.810 40 H 0.197 0.803 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -24.939 -7.882 -1.878 26.222 hybrid contribution 0.830 1.888 0.454 2.112 sum -24.108 -5.994 -1.425 24.883 Atomic orbital electron populations 1.20386 0.85262 1.04430 1.03191 1.20922 0.94968 0.84118 1.09408 1.21947 0.88849 0.98830 1.09251 1.19258 0.91960 0.90261 1.15209 1.23777 0.89036 0.97838 0.99569 1.75120 0.94330 1.26217 1.12439 1.47282 1.02731 1.06901 1.77664 1.16955 0.81365 0.88216 0.77825 1.90663 1.86239 1.16315 1.57081 1.20146 0.90603 0.95512 1.53779 0.88969 1.27136 1.04565 0.96319 0.90829 1.70215 1.27048 1.12554 1.33006 0.84910 0.73957 0.77874 0.80557 1.17554 1.19426 1.17461 1.21102 0.84279 0.94582 1.05648 1.20193 0.94195 0.96358 1.02138 1.40808 1.04555 1.03948 1.58070 1.18020 1.06728 0.85067 0.94006 1.21439 0.97002 0.96041 0.95861 1.21599 0.97704 0.92724 1.00750 1.21666 0.95120 1.01525 0.90049 1.21499 1.01208 0.91374 1.02440 1.18362 1.02478 0.93115 0.79833 1.91495 1.92478 1.82568 1.46227 0.90815 0.87722 0.91357 0.80851 0.84968 0.78315 0.90924 0.91688 0.91032 0.92283 0.84228 0.81019 0.80301 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.03 71.24 0.71 -0.54 16 2 C 0.01 0.31 6.82 40.90 0.28 0.59 16 3 C -0.16 -4.55 10.99 23.63 0.26 -4.29 16 4 C -0.16 -5.73 6.34 -18.72 -0.12 -5.85 16 5 C 0.11 4.23 11.05 86.91 0.96 5.19 16 6 N -0.27 -13.69 8.65 -52.41 -0.45 -14.15 16 7 N -0.60 -31.68 6.26 -180.84 -1.13 -32.81 16 8 C 0.55 34.54 7.63 84.69 0.65 35.19 16 9 O -0.62 -44.78 15.18 -5.54 -0.08 -44.86 16 10 C -0.56 -33.07 9.22 23.17 0.21 -32.85 16 11 H 0.09 4.75 7.85 -2.91 -0.02 4.72 16 12 C 0.03 1.70 5.50 85.32 0.47 2.16 16 13 N -0.80 -49.77 11.69 21.85 0.26 -49.52 16 14 Si 1.01 40.80 29.56 68.60 2.03 42.83 16 15 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 16 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 18 C 0.06 2.21 6.95 42.34 0.29 2.50 16 19 C -0.07 -2.89 9.48 71.23 0.68 -2.21 16 20 N -0.40 -11.85 2.56 -317.88 -0.81 -12.67 16 21 C 0.05 1.26 4.22 38.16 0.16 1.42 16 22 C -0.08 -1.53 9.97 22.38 0.22 -1.30 16 23 C -0.11 -1.18 10.04 22.26 0.22 -0.96 16 24 C -0.07 -0.62 10.04 22.29 0.22 -0.39 16 25 C -0.15 -2.19 10.02 22.29 0.22 -1.96 16 26 C 0.08 1.94 7.31 22.49 0.16 2.10 16 27 F -0.15 -4.40 17.08 44.97 0.77 -3.63 16 28 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.04 7.75 -2.39 -0.02 1.02 16 31 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.13 4.29 8.04 -2.91 -0.02 4.27 16 33 H 0.38 16.84 8.62 -213.32 -1.84 15.00 16 34 H 0.28 15.60 8.29 -92.71 -0.77 14.83 16 35 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.07 3.55 6.35 -2.39 -0.02 3.53 16 37 H 0.06 2.16 7.76 -2.38 -0.02 2.14 16 38 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 40 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -89.57 367.29 5.42 -84.15 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.76 Total: 31.86 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.61 Total: -1.21 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -2.14 Total: -109.14 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.08 Total: -44.86 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.63 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -89.57 5.42 -84.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028216564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.543 kcal (2) G-P(sol) polarization free energy of solvation -89.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds