Wall clock time and date at job start Tue Mar 31 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34835 * 119.87204 * 2 1 4 4 O 1.21782 * 120.30529 * 359.97438 * 3 2 1 5 5 C 1.41570 * 119.38460 * 179.71677 * 3 2 1 6 6 C 1.35027 * 119.11227 * 0.57224 * 5 3 2 7 7 N 1.36825 * 119.68500 * 359.46759 * 6 5 3 8 8 C 1.46506 * 119.68991 * 180.25541 * 7 6 5 9 9 C 1.50694 * 109.47017 * 90.00208 * 8 7 6 10 10 O 1.21278 * 120.00019 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99660 * 180.02562 * 9 8 7 12 12 C 1.39244 * 119.99732 * 175.70714 * 11 9 8 13 13 C 1.39483 * 119.83098 * 215.01293 * 12 11 9 14 14 C 1.36374 * 120.16471 * 179.71683 * 13 12 11 15 15 C 1.40871 * 119.82700 * 0.57867 * 14 13 12 16 16 C 1.41152 * 120.15876 * 179.67481 * 15 14 13 17 17 H 1.08000 * 119.99790 * 214.79865 * 16 15 14 18 18 C 1.39904 * 120.00237 * 34.80474 * 16 15 14 19 19 N 1.30866 * 120.00226 * 355.55562 * 18 16 15 20 20 Si 1.86801 * 120.00020 * 175.55669 * 18 16 15 21 21 H 1.48502 * 109.47262 * 59.99773 * 20 18 16 22 22 H 1.48497 * 109.47138 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47363 * 299.99929 * 20 18 16 24 24 C 1.40863 * 119.67677 * 359.69619 * 15 14 13 25 25 C 1.36379 * 119.82634 * 0.02562 * 24 15 14 26 26 C 1.34542 * 120.62260 * 0.23305 * 7 6 5 27 27 O 1.21583 * 119.53643 * 180.02562 * 26 7 6 28 28 H 1.09000 * 109.47028 * 269.98269 * 1 2 3 29 29 H 1.09003 * 109.46601 * 29.97804 * 1 2 3 30 30 H 1.09001 * 109.47344 * 149.97699 * 1 2 3 31 31 H 1.07996 * 120.44478 * 180.28924 * 5 3 2 32 32 H 1.08003 * 120.15427 * 179.74519 * 6 5 3 33 33 H 1.09001 * 109.46651 * 210.00315 * 8 7 6 34 34 H 1.09001 * 109.46822 * 329.99830 * 8 7 6 35 35 H 0.96998 * 120.00428 * 355.70600 * 11 9 8 36 36 H 1.08000 * 119.91476 * 0.02562 * 13 12 11 37 37 H 1.08000 * 120.08665 * 180.25365 * 14 13 12 38 38 H 0.96999 * 120.00312 * 180.02562 * 19 18 16 39 39 H 1.07993 * 120.08792 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.91705 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1366 1.1692 0.0000 4 8 1.5310 2.2257 -0.0005 5 6 3.5523 1.1572 0.0061 6 6 4.1992 -0.0280 0.0000 7 7 3.4804 -1.1923 -0.0009 8 6 4.1823 -2.4783 -0.0018 9 6 4.4228 -2.9203 1.4187 10 8 4.0457 -2.2290 2.3410 11 7 5.0580 -4.0834 1.6640 12 6 5.3598 -4.4491 2.9733 13 6 6.5377 -5.1449 3.2454 14 6 6.8428 -5.5014 4.5258 15 6 5.9590 -5.1757 5.5733 16 6 6.2645 -5.5473 6.9003 17 1 5.4725 -5.8301 7.5779 18 6 7.5934 -5.5491 7.3380 19 7 8.5604 -5.2910 6.4948 20 14 7.9874 -5.9199 9.1259 21 1 7.4944 -7.2777 9.4701 22 1 9.4568 -5.8604 9.3316 23 1 7.3241 -4.9169 9.9973 24 6 4.7686 -4.4779 5.2899 25 6 4.4798 -4.1231 4.0051 26 6 2.1353 -1.1673 -0.0004 27 8 1.5163 -2.2138 -0.0007 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 4.1074 2.0835 0.0109 32 1 5.2788 -0.0568 0.0004 33 1 3.5750 -3.2231 -0.5162 34 1 5.1375 -2.3705 -0.5156 35 1 5.3049 -4.6658 0.9287 36 1 7.2121 -5.3977 2.4406 37 1 7.7571 -6.0366 4.7356 38 1 9.4817 -5.2926 6.7981 39 1 4.0861 -4.2252 6.0878 40 1 3.5674 -3.5884 3.7861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032712361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:11 Heat of formation + Delta-G solvation = -32.205340 kcal Electronic energy + Delta-G solvation = -27028.465295 eV Core-core repulsion = 23002.549469 eV Total energy + Delta-G solvation = -4025.915827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.53395 -40.01546 -39.00219 -37.67874 -37.02223 -35.36315 -34.57631 -33.09055 -32.23149 -29.74321 -29.39468 -28.46287 -27.61320 -24.95398 -24.04952 -23.60416 -21.82381 -20.98415 -19.96069 -19.44850 -18.16602 -17.75195 -17.34655 -17.24207 -16.67659 -16.41604 -15.65823 -15.34498 -15.24793 -15.08753 -14.58652 -14.02888 -13.95065 -13.84998 -13.71892 -13.34257 -13.22647 -12.74306 -12.53778 -12.41059 -12.19736 -12.01132 -11.77835 -11.44792 -11.20017 -11.08204 -11.07266 -10.80327 -10.44669 -10.17727 -9.95546 -9.62989 -9.56851 -9.33246 -9.01829 -8.74898 -7.63496 -6.97046 -6.69151 -4.41915 0.78949 1.58788 1.83698 2.36102 2.74781 2.89956 3.01843 3.05351 3.07931 3.17745 3.25309 3.54927 3.92790 4.13523 4.31740 4.59829 4.62360 4.77801 4.85213 4.94759 5.16259 5.20089 5.26491 5.40107 5.51222 5.57246 5.80552 6.09451 6.15783 6.35321 6.61520 6.79859 6.98010 6.98605 7.10393 7.20805 7.31034 7.55471 7.61113 7.70747 7.75229 7.97675 8.11626 8.23267 8.47544 8.58575 8.85368 8.90835 10.21801 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.002439 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.050717 B =11476.331956 C =11693.774432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.556 5.556 3 C 0.549 3.451 4 O -0.522 6.522 5 C -0.300 4.300 6 C 0.188 3.812 7 N -0.516 5.516 8 C 0.091 3.909 9 C 0.481 3.519 10 O -0.519 6.519 11 N -0.642 5.642 12 C -0.003 4.003 13 C -0.117 4.117 14 C -0.143 4.143 15 C 0.103 3.897 16 C -0.460 4.460 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.811 5.811 20 Si 0.916 3.084 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.206 4.206 25 C -0.082 4.082 26 C 0.700 3.300 27 O -0.535 6.535 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.398 0.602 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.096 0.904 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 5.810 -16.124 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.300 5.300 3 C 0.346 3.654 4 O -0.398 6.398 5 C -0.327 4.327 6 C 0.064 3.936 7 N -0.235 5.235 8 C -0.034 4.034 9 C 0.265 3.735 10 O -0.394 6.394 11 N -0.285 5.285 12 C -0.095 4.095 13 C -0.137 4.137 14 C -0.163 4.163 15 C 0.100 3.900 16 C -0.490 4.490 17 H 0.094 0.906 18 C -0.145 4.145 19 N -0.438 5.438 20 Si 0.741 3.259 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.226 4.226 25 C -0.102 4.102 26 C 0.403 3.597 27 O -0.408 6.408 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.196 0.804 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.232 0.768 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.749 6.223 -15.479 17.346 hybrid contribution 0.595 -0.316 0.554 0.872 sum -4.154 5.907 -14.925 16.581 Atomic orbital electron populations 1.21895 0.75393 1.04722 1.04086 1.46316 1.10413 1.06291 1.66960 1.17378 0.88990 0.82839 0.76167 1.90864 1.70833 1.29301 1.48804 1.21863 0.92944 0.99077 1.18826 1.22349 0.99001 0.84145 0.88093 1.44259 1.05038 1.07624 1.66556 1.21768 0.99619 0.84814 0.97243 1.20612 0.80148 0.82055 0.90690 1.90756 1.49403 1.54188 1.45081 1.42848 1.57627 1.19647 1.08419 1.17212 0.97991 1.11924 0.82399 1.20291 0.94145 1.02051 0.97211 1.21199 1.01875 1.03026 0.90171 1.17734 0.90562 0.88333 0.93375 1.19496 0.92684 1.40172 0.96673 0.90570 1.25887 0.96010 0.92644 0.99997 1.69740 1.00934 1.37237 1.35843 0.86231 0.77731 0.79888 0.82019 1.18998 1.20377 1.19047 1.20813 1.01152 1.05672 0.95009 1.20388 0.97628 0.99570 0.92583 1.15760 0.81332 0.84401 0.78214 1.91016 1.65753 1.30163 1.53859 0.90788 0.88936 0.89096 0.81065 0.80447 0.85261 0.85482 0.76841 0.88966 0.84951 0.91007 0.88586 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.13 59.85 0.61 1.46 16 2 N -0.56 -7.12 2.96 -131.49 -0.39 -7.51 16 3 C 0.55 7.15 7.44 -14.96 -0.11 7.04 16 4 O -0.52 -8.10 16.70 5.12 0.09 -8.01 16 5 C -0.30 -2.93 10.00 -39.45 -0.39 -3.33 16 6 C 0.19 1.58 10.38 -16.46 -0.17 1.41 16 7 N -0.52 -5.58 2.10 -122.83 -0.26 -5.84 16 8 C 0.09 0.83 5.82 -5.19 -0.03 0.80 16 9 C 0.48 7.18 7.73 -10.99 -0.08 7.10 16 10 O -0.52 -10.33 13.85 5.56 0.08 -10.25 16 11 N -0.64 -9.78 5.30 -9.74 -0.05 -9.83 16 12 C 0.00 -0.07 6.31 -83.57 -0.53 -0.59 16 13 C -0.12 -2.49 9.90 -39.79 -0.39 -2.89 16 14 C -0.14 -3.52 8.61 -39.26 -0.34 -3.86 16 15 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 16 C -0.46 -12.03 9.02 -37.85 -0.34 -12.37 16 17 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 18 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 19 N -0.81 -20.49 10.60 55.55 0.59 -19.90 16 20 Si 0.92 18.64 29.56 -169.99 -5.03 13.61 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.21 -5.15 9.74 -39.26 -0.38 -5.53 16 25 C -0.08 -1.91 8.61 -39.79 -0.34 -2.25 16 26 C 0.70 9.43 8.11 -87.29 -0.71 8.72 16 27 O -0.54 -8.42 15.35 5.29 0.08 -8.34 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 30 H 0.09 0.88 7.39 -51.93 -0.38 0.50 16 31 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.13 1.05 7.37 -51.93 -0.38 0.67 16 34 H 0.13 0.54 8.03 -51.93 -0.42 0.12 16 35 H 0.40 4.31 8.82 -40.82 -0.36 3.95 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.13 3.38 6.13 -52.49 -0.32 3.06 16 38 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 39 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.11 2.50 6.23 -52.49 -0.33 2.17 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -35.35 348.43 -7.79 -43.13 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -4.24 Total: 8.25 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -3.91 Total: -0.57 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.11 Total: -43.08 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.24 Total: -26.60 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.35 -7.79 -43.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032712361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.926 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds