Wall clock time and date at job start Tue Mar 31 2020 05:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47060 * 225.87866 * 3 2 1 5 5 N 1.46507 * 109.47474 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99486 * 270.00170 * 5 4 3 7 7 C 1.50700 * 109.46870 * 269.99176 * 6 5 4 8 8 H 1.08000 * 120.00293 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99635 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00321 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99988 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46770 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47048 * 120.00083 * 11 9 7 14 14 H 1.48497 * 109.47015 * 240.00685 * 11 9 7 15 15 C 1.34773 * 120.00082 * 89.99670 * 5 4 3 16 16 O 1.21275 * 120.00168 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99985 * 0.02562 * 15 5 4 18 18 N 1.46495 * 109.47306 * 179.97438 * 17 15 5 19 19 N 1.40164 * 126.21089 * 270.02280 * 18 17 15 20 20 C 1.31270 * 107.88877 * 179.97438 * 19 18 17 21 21 C 1.41784 * 132.01036 * 180.02562 * 20 19 18 22 22 C 1.35525 * 119.32577 * 179.97438 * 21 20 19 23 23 C 1.40999 * 119.86012 * 0.02562 * 22 21 20 24 24 C 1.34454 * 120.59927 * 359.97438 * 23 22 21 25 25 N 1.37469 * 120.68031 * 0.02562 * 24 23 22 26 26 C 1.34816 * 131.80575 * 180.02562 * 25 24 23 27 27 O 1.21895 * 126.05599 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47248 * 105.88411 * 3 2 1 29 29 H 1.08997 * 109.47440 * 345.87460 * 3 2 1 30 30 H 1.09005 * 109.47159 * 59.99925 * 4 3 2 31 31 H 1.09002 * 109.47250 * 300.00456 * 4 3 2 32 32 H 1.08997 * 109.47410 * 29.99861 * 6 5 4 33 33 H 1.09002 * 109.46444 * 149.99949 * 6 5 4 34 34 H 0.96999 * 120.00482 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47539 * 59.99523 * 17 15 5 36 36 H 1.09007 * 109.46887 * 299.99789 * 17 15 5 37 37 H 1.08000 * 120.33928 * 359.95948 * 21 20 19 38 38 H 1.08002 * 120.07130 * 179.72359 * 22 21 20 39 39 H 1.07996 * 119.69910 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.65779 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1175 1.0051 1.0355 5 7 4.5825 1.0063 1.0352 6 6 5.3159 0.0959 1.9182 7 6 5.5669 0.7728 3.2410 8 1 5.2151 1.7802 3.4075 9 6 6.2459 0.1060 4.2386 10 7 6.6748 -1.1205 4.0358 11 14 6.5565 0.9447 5.8787 12 1 5.9766 2.3115 5.8532 13 1 5.9203 0.1577 6.9654 14 1 8.0190 1.0315 6.1211 15 6 5.2556 1.8448 0.2225 16 8 6.4683 1.8454 0.2219 17 6 4.5011 2.7816 -0.6854 18 7 5.4522 3.5821 -1.4604 19 7 5.9897 4.8212 -1.0859 20 6 6.7993 5.2149 -2.0414 21 6 7.5996 6.3759 -2.1886 22 6 8.3546 6.5246 -3.3043 23 6 8.3362 5.5287 -4.3022 24 6 7.5756 4.4294 -4.1581 25 7 6.8008 4.2546 -3.0361 26 6 5.9696 3.2606 -2.6638 27 8 5.7288 2.2501 -3.3015 28 1 2.9712 0.2821 -0.9884 29 1 2.9718 -0.9957 0.2508 30 1 2.7542 0.7238 2.0240 31 1 2.7536 2.0016 0.7849 32 1 4.7275 -0.8076 2.0781 33 1 6.2684 -0.1674 1.4582 34 1 7.1528 -1.5895 4.7375 35 1 3.8743 3.4421 -0.0862 36 1 3.8744 2.2032 -1.3644 37 1 7.6074 7.1343 -1.4197 38 1 8.9653 7.4063 -3.4309 39 1 8.9385 5.6500 -5.1904 40 1 7.5734 3.6759 -4.9318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046030174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:49 Heat of formation + Delta-G solvation = 84.233129 kcal Electronic energy + Delta-G solvation = -27318.931618 eV Core-core repulsion = 23330.357693 eV Total energy + Delta-G solvation = -3988.573925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.05023 -39.51503 -38.33509 -37.09301 -36.84916 -35.32296 -33.99482 -33.02147 -32.54992 -30.90014 -29.58334 -28.55325 -26.92725 -24.47649 -24.05376 -23.22182 -22.77092 -21.82380 -18.92749 -18.57944 -17.74806 -17.62281 -17.18247 -16.72372 -16.44586 -16.31426 -15.80254 -15.24883 -15.16735 -14.90075 -14.70834 -14.53199 -14.04083 -13.72962 -13.44741 -13.17431 -12.99855 -12.61580 -12.47394 -12.45607 -12.22406 -12.06296 -11.95934 -11.84054 -11.71237 -11.31454 -11.01054 -10.88825 -10.80606 -10.66951 -10.40387 -10.22160 -9.95435 -9.71769 -9.01271 -8.49441 -7.94078 -7.79747 -6.10690 -4.15447 0.35995 1.36165 1.45482 2.45675 2.70600 2.80034 2.82722 3.12072 3.18269 3.27499 3.35700 3.39350 3.58429 3.90811 4.13098 4.40120 4.40539 4.50808 4.73841 4.79669 4.87972 4.91777 4.96414 5.09900 5.12692 5.24948 5.33273 5.45669 5.60749 5.73108 5.77309 5.85980 5.94690 6.02401 6.12753 6.45676 6.85363 7.29328 7.36742 7.41360 7.56402 7.81681 7.85456 8.11609 8.14899 8.72670 8.90863 9.50148 10.97577 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.003801 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.972675 B = 7365.533750 C = 9395.583093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.217 3.783 3 C -0.053 4.053 4 C 0.114 3.886 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.493 3.507 16 O -0.516 6.516 17 C 0.135 3.865 18 N -0.412 5.412 19 N -0.267 5.267 20 C 0.288 3.712 21 C -0.115 4.115 22 C -0.050 4.050 23 C -0.188 4.188 24 C 0.132 3.868 25 N -0.480 5.480 26 C 0.652 3.348 27 O -0.539 6.539 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.157 0.843 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 14.008 -16.325 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.101 4.101 3 C -0.095 4.095 4 C -0.013 4.013 5 N -0.325 5.325 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.277 3.723 16 O -0.391 6.391 17 C 0.010 3.990 18 N -0.230 5.230 19 N -0.092 5.092 20 C 0.021 3.979 21 C -0.137 4.137 22 C -0.075 4.075 23 C -0.211 4.211 24 C 0.013 3.987 25 N -0.196 5.196 26 C 0.352 3.648 27 O -0.412 6.412 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.175 0.825 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.833 13.120 -15.606 20.470 hybrid contribution 0.987 0.047 0.415 1.072 sum -0.846 13.167 -15.191 20.121 Atomic orbital electron populations 1.81212 1.13001 1.08954 1.08925 1.29046 0.95032 0.93029 0.92976 1.19917 0.81476 1.04970 1.03097 1.21393 0.81939 0.97948 0.99996 1.48196 1.04960 1.39189 1.40120 1.19398 0.92625 0.87515 0.87742 1.21445 1.36756 1.00930 0.97668 0.92197 1.24918 0.95239 0.94874 0.98940 1.69926 1.38148 1.11212 1.33896 0.86449 0.78111 0.79601 0.83326 1.19719 1.20943 1.20903 1.20453 0.88584 0.81832 0.81444 1.90733 1.13507 1.67649 1.67195 1.21594 0.88915 0.93512 0.94944 1.48193 1.41406 1.17091 1.16261 1.77788 1.14798 0.97503 1.19100 1.21516 0.98205 0.92194 0.85941 1.20262 0.97836 0.94911 1.00688 1.21147 0.95863 0.98553 0.91927 1.20749 1.03464 0.94532 1.02353 1.21682 0.90413 0.98997 0.87598 1.43475 1.37805 1.19963 1.18327 1.16400 0.81479 0.83241 0.83659 1.91118 1.65834 1.25142 1.59067 0.87482 0.86218 0.88166 0.90625 0.94389 0.93583 0.92692 0.85631 0.86054 0.82539 0.83568 0.82893 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.50 18.54 42.15 0.78 -5.72 16 2 C 0.22 2.61 15.43 -20.76 -0.32 2.29 16 3 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 4 C 0.11 1.47 5.17 -4.04 -0.02 1.45 16 5 N -0.59 -10.94 2.46 -175.05 -0.43 -11.37 16 6 C 0.25 5.87 5.16 -5.19 -0.03 5.84 16 7 C -0.53 -14.20 9.39 -34.44 -0.32 -14.52 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 11 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.49 9.57 7.74 -10.99 -0.09 9.49 16 16 O -0.52 -12.82 16.01 5.56 0.09 -12.73 16 17 C 0.14 1.97 5.40 -5.20 -0.03 1.94 16 18 N -0.41 -6.86 3.11 -66.31 -0.21 -7.06 16 19 N -0.27 -4.28 12.62 31.35 0.40 -3.88 16 20 C 0.29 3.84 7.87 -155.67 -1.23 2.61 16 21 C -0.12 -1.02 10.12 -39.20 -0.40 -1.41 16 22 C -0.05 -0.31 10.06 -39.51 -0.40 -0.70 16 23 C -0.19 -1.18 9.97 -39.87 -0.40 -1.58 16 24 C 0.13 1.24 10.90 -16.36 -0.18 1.06 16 25 N -0.48 -6.59 2.93 -66.47 -0.19 -6.79 16 26 C 0.65 11.05 8.70 -86.79 -0.75 10.29 16 27 O -0.54 -10.16 17.86 5.01 0.09 -10.07 16 28 H 0.11 0.96 7.22 -51.93 -0.38 0.59 16 29 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.13 1.46 7.40 -51.93 -0.38 1.08 16 36 H 0.12 1.40 7.14 -51.93 -0.37 1.03 16 37 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -38.87 363.31 -7.06 -45.94 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.35 Total: -2.87 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: -4.43 Total: 17.66 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 1.08 Total: -59.74 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.18 Total: -22.81 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.87 -7.06 -45.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046030174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.169 kcal (2) G-P(sol) polarization free energy of solvation -38.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds