Wall clock time and date at job start Tue Mar 31 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00173 * 2 1 4 4 H 1.48504 * 109.46953 * 270.00006 * 3 2 1 5 5 H 1.48497 * 109.47130 * 29.99831 * 3 2 1 6 6 H 1.48497 * 109.46925 * 150.00016 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99689 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00143 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.36758 * 57.65117 * 9 7 2 11 11 C 1.54373 * 110.41374 * 295.17441 * 9 7 2 12 12 C 1.54258 * 105.06190 * 217.36623 * 11 9 7 13 13 C 1.54370 * 105.06012 * 359.97438 * 12 11 9 14 14 N 1.48554 * 104.59749 * 23.85419 * 13 12 11 15 15 C 1.38329 * 111.00397 * 200.96339 * 14 13 12 16 16 N 1.32478 * 120.57730 * 61.00468 * 15 14 13 17 17 C 1.32081 * 121.17651 * 179.97438 * 16 15 14 18 18 N 1.31296 * 122.19615 * 0.25069 * 17 16 15 19 19 C 1.34014 * 120.96004 * 359.49536 * 18 17 16 20 20 S 1.75517 * 131.24537 * 180.20284 * 19 18 17 21 21 C 1.75594 * 92.47580 * 180.34482 * 20 19 18 22 22 C 1.33384 * 111.37859 * 359.92602 * 21 20 19 23 23 C 1.39321 * 119.15195 * 0.51050 * 19 18 17 24 24 C 1.52320 * 123.39579 * 180.02562 * 22 21 20 25 25 C 1.52966 * 108.84185 * 342.67167 * 24 22 21 26 26 C 1.53178 * 109.07805 * 50.84213 * 25 24 22 27 27 C 1.51879 * 124.29307 * 179.87326 * 21 20 19 28 28 H 0.96999 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.32522 * 336.26233 * 11 9 7 30 30 H 1.09004 * 110.32630 * 98.47257 * 11 9 7 31 31 H 1.09000 * 110.32295 * 118.89651 * 12 11 9 32 32 H 1.09004 * 110.32391 * 241.09759 * 12 11 9 33 33 H 1.09003 * 110.41165 * 265.07241 * 13 12 11 34 34 H 1.09006 * 110.41444 * 142.63321 * 13 12 11 35 35 H 1.08002 * 118.90287 * 179.97438 * 17 16 15 36 36 H 1.09008 * 109.57543 * 102.47450 * 24 22 21 37 37 H 1.08997 * 109.58231 * 222.85984 * 24 22 21 38 38 H 1.08994 * 109.53724 * 170.73115 * 25 24 22 39 39 H 1.09000 * 109.53097 * 290.88750 * 25 24 22 40 40 H 1.09003 * 109.55377 * 49.47273 * 26 25 24 41 41 H 1.09000 * 109.55959 * 169.67811 * 26 25 24 42 42 H 1.08999 * 109.57500 * 283.24043 * 27 21 20 43 43 H 1.08998 * 109.57738 * 43.62847 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5874 -2.5549 -0.8613 11 6 0.4493 -2.6569 1.3115 12 6 0.5470 -4.1556 1.6633 13 6 1.3990 -4.7775 0.5361 14 7 2.1970 -3.6443 0.0014 15 6 2.6472 -3.9152 -1.2782 16 7 1.7882 -4.1347 -2.2625 17 6 2.2050 -4.3940 -3.4887 18 7 3.4800 -4.4528 -3.7964 19 6 4.4236 -4.2397 -2.8690 20 16 6.1754 -4.2460 -2.9777 21 6 6.3587 -3.8801 -1.2701 22 6 5.1742 -3.7615 -0.6684 23 6 4.0376 -3.9627 -1.5593 24 6 5.0144 -3.4461 0.8132 25 6 6.3404 -3.7239 1.5233 26 6 7.4698 -3.0136 0.7707 27 6 7.6959 -3.7203 -0.5680 28 1 -0.4849 0.8401 -0.0004 29 1 0.8936 -2.0526 2.1024 30 1 -0.5911 -2.3718 1.1553 31 1 1.0393 -4.2869 2.6269 32 1 -0.4454 -4.6061 1.6798 33 1 0.7570 -5.1908 -0.2417 34 1 2.0560 -5.5490 0.9377 35 1 1.4726 -4.5676 -4.2633 36 1 4.7471 -2.3965 0.9364 37 1 4.2333 -4.0761 1.2386 38 1 6.2918 -3.3495 2.5458 39 1 6.5287 -4.7974 1.5368 40 1 7.1926 -1.9745 0.5929 41 1 8.3835 -3.0510 1.3639 42 1 8.1362 -4.7020 -0.3931 43 1 8.3648 -3.1231 -1.1877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048346080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:06 Heat of formation + Delta-G solvation = 63.781500 kcal Electronic energy + Delta-G solvation = -26793.513040 eV Core-core repulsion = 23350.345480 eV Total energy + Delta-G solvation = -3443.167560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84325 -38.23051 -37.95093 -33.94393 -33.41005 -32.54595 -30.74056 -30.16700 -28.46686 -28.26856 -24.76199 -24.32165 -24.04293 -22.33390 -21.63450 -20.53344 -19.82164 -18.54121 -17.72117 -17.23147 -16.39420 -16.09847 -15.36100 -14.97252 -14.66886 -14.51536 -14.14085 -13.98197 -13.67928 -13.50239 -13.11440 -12.81852 -12.60011 -12.48476 -12.24760 -11.93772 -11.63307 -11.43229 -11.26399 -11.03128 -10.96617 -10.85785 -10.76825 -10.65972 -10.46053 -10.28183 -10.18126 -10.12952 -9.75084 -9.63475 -9.10825 -8.93664 -8.52190 -8.49739 -7.86423 -7.67200 -6.10731 -4.12433 0.76971 1.27289 1.36610 2.07855 2.43715 3.26312 3.33215 3.35998 4.03970 4.16633 4.39529 4.48470 4.63640 4.80830 4.98797 5.00040 5.10188 5.19007 5.24631 5.44736 5.48486 5.57818 5.58937 5.66884 5.71859 5.78494 5.90504 5.93752 6.10346 6.13967 6.21345 6.32618 6.35652 6.38643 6.46946 6.54793 6.56696 6.89117 6.94230 6.99728 7.10139 7.23140 7.49549 7.64611 7.89744 8.03631 8.29936 8.43109 8.91401 9.51309 10.99154 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.005741 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.091529 B = 4876.208165 C = 5452.422832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.210 3.790 10 H 0.036 0.964 11 C -0.096 4.096 12 C -0.126 4.126 13 C 0.041 3.959 14 N -0.469 5.469 15 C 0.434 3.566 16 N -0.552 5.552 17 C 0.320 3.680 18 N -0.512 5.512 19 C 0.092 3.908 20 S 0.126 5.874 21 C -0.196 4.196 22 C -0.028 4.028 23 C -0.153 4.153 24 C -0.053 4.053 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.039 4.039 28 H 0.262 0.738 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.196 0.804 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.809 -9.590 0.973 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.106 3.894 10 H 0.054 0.946 11 C -0.135 4.135 12 C -0.165 4.165 13 C -0.086 4.086 14 N -0.194 5.194 15 C 0.189 3.811 16 N -0.271 5.271 17 C 0.027 3.973 18 N -0.229 5.229 19 C -0.159 4.159 20 S 0.386 5.614 21 C -0.311 4.311 22 C -0.040 4.040 23 C -0.168 4.168 24 C -0.092 4.092 25 C -0.159 4.159 26 C -0.156 4.156 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.212 0.788 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.517 -9.770 -0.644 15.117 hybrid contribution -0.902 1.261 0.838 1.762 sum 10.615 -8.510 0.193 13.606 Atomic orbital electron populations 1.69956 1.05819 1.26766 1.50105 1.24882 0.94848 0.98981 0.95065 0.86581 0.79961 0.83339 0.78127 1.20845 1.21106 1.19663 1.20944 0.93216 0.89177 1.51061 0.91995 1.20442 0.88149 0.86042 0.94725 0.94602 1.22266 1.00691 0.91480 0.99059 1.22388 0.98103 0.98679 0.97290 1.23069 0.95098 0.93057 0.97402 1.63623 1.37498 1.06216 1.12044 1.20411 0.87530 0.82888 0.90282 1.68491 1.40311 1.16372 1.01899 1.24650 0.89862 0.90394 0.92410 1.68072 1.01505 1.18581 1.34781 1.23520 0.99748 1.00505 0.92111 1.83778 0.94977 1.75781 1.06822 1.24326 0.98865 1.11860 0.96074 1.20245 0.88763 0.97945 0.97031 1.20346 0.95053 1.07480 0.93913 1.20647 0.96967 1.03955 0.87612 1.21632 0.94845 1.00291 0.99147 1.21592 0.98931 1.00214 0.94890 1.20309 0.90771 1.01156 0.95582 0.92866 0.91915 0.91805 0.92108 0.92472 0.93162 0.91526 0.78759 0.88997 0.88870 0.91271 0.92104 0.91201 0.91373 0.90429 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 12.61 55.43 0.70 -24.19 16 2 C 0.06 1.76 5.35 -17.82 -0.10 1.66 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.46 8.51 -34.44 -0.29 -13.75 16 8 H 0.06 1.67 7.27 -52.48 -0.38 1.29 16 9 C 0.21 5.09 2.10 -67.24 -0.14 4.95 16 10 H 0.04 1.00 7.32 -51.93 -0.38 0.62 16 11 C -0.10 -2.12 5.75 -25.35 -0.15 -2.26 16 12 C -0.13 -2.22 7.00 -25.36 -0.18 -2.39 16 13 C 0.04 0.73 6.41 -2.19 -0.01 0.72 16 14 N -0.47 -9.72 3.11 -161.96 -0.50 -10.22 16 15 C 0.43 9.10 5.40 -154.53 -0.83 8.27 16 16 N -0.55 -11.40 8.91 -13.41 -0.12 -11.52 16 17 C 0.32 5.79 12.26 -92.33 -1.13 4.66 16 18 N -0.51 -9.58 10.48 -13.46 -0.14 -9.72 16 19 C 0.09 1.72 7.67 -16.20 -0.12 1.60 16 20 S 0.13 1.89 23.18 -107.50 -2.49 -0.60 16 21 C -0.20 -2.89 6.29 -35.42 -0.22 -3.11 16 22 C -0.03 -0.48 5.93 -102.49 -0.61 -1.09 16 23 C -0.15 -2.99 6.05 -105.06 -0.64 -3.63 16 24 C -0.05 -0.83 5.29 -27.10 -0.14 -0.97 16 25 C -0.12 -1.45 5.91 -26.66 -0.16 -1.60 16 26 C -0.12 -1.27 5.94 -26.61 -0.16 -1.43 16 27 C -0.04 -0.43 6.24 -27.27 -0.17 -0.60 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.06 1.45 7.85 -51.93 -0.41 1.04 16 30 H 0.06 1.50 8.05 -51.93 -0.42 1.08 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.93 7.51 -51.93 -0.39 0.54 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.20 2.72 8.06 -52.49 -0.42 2.29 16 36 H 0.09 1.65 7.60 -51.92 -0.39 1.26 16 37 H 0.09 1.53 7.13 -51.93 -0.37 1.16 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 40 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -29.51 353.53 -13.40 -42.92 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.10 Total: 0.78 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -5.05 Total: -8.99 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.07 Total: -55.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.51 -13.40 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048346080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.698 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds