Wall clock time and date at job start Tue Mar 31 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00173 * 2 1 4 4 H 1.48504 * 109.46953 * 270.00006 * 3 2 1 5 5 H 1.48497 * 109.47130 * 29.99831 * 3 2 1 6 6 H 1.48497 * 109.46925 * 150.00016 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99689 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00143 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.36758 * 57.65117 * 9 7 2 11 11 C 1.54373 * 110.41374 * 295.17441 * 9 7 2 12 12 C 1.54258 * 105.06190 * 217.36623 * 11 9 7 13 13 C 1.54370 * 105.06012 * 359.97438 * 12 11 9 14 14 N 1.48554 * 104.59749 * 23.85419 * 13 12 11 15 15 C 1.38329 * 111.00397 * 200.96339 * 14 13 12 16 16 N 1.32478 * 120.57730 * 61.00468 * 15 14 13 17 17 C 1.32081 * 121.17651 * 179.97438 * 16 15 14 18 18 N 1.31296 * 122.19615 * 0.25069 * 17 16 15 19 19 C 1.34014 * 120.96004 * 359.49536 * 18 17 16 20 20 S 1.75517 * 131.24537 * 180.20284 * 19 18 17 21 21 C 1.75594 * 92.47580 * 180.34482 * 20 19 18 22 22 C 1.33384 * 111.37859 * 359.92602 * 21 20 19 23 23 C 1.39321 * 119.15195 * 0.51050 * 19 18 17 24 24 C 1.52320 * 123.39579 * 180.02562 * 22 21 20 25 25 C 1.52966 * 108.84185 * 342.67167 * 24 22 21 26 26 C 1.53178 * 109.07805 * 50.84213 * 25 24 22 27 27 C 1.51879 * 124.29307 * 179.87326 * 21 20 19 28 28 H 0.96999 * 119.99592 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.32522 * 336.26233 * 11 9 7 30 30 H 1.09004 * 110.32630 * 98.47257 * 11 9 7 31 31 H 1.09000 * 110.32295 * 118.89651 * 12 11 9 32 32 H 1.09004 * 110.32391 * 241.09759 * 12 11 9 33 33 H 1.09003 * 110.41165 * 265.07241 * 13 12 11 34 34 H 1.09006 * 110.41444 * 142.63321 * 13 12 11 35 35 H 1.08002 * 118.90287 * 179.97438 * 17 16 15 36 36 H 1.09008 * 109.57543 * 102.47450 * 24 22 21 37 37 H 1.08997 * 109.58231 * 222.85984 * 24 22 21 38 38 H 1.08994 * 109.53724 * 170.73115 * 25 24 22 39 39 H 1.09000 * 109.53097 * 290.88750 * 25 24 22 40 40 H 1.09003 * 109.55377 * 49.47273 * 26 25 24 41 41 H 1.09000 * 109.55959 * 169.67811 * 26 25 24 42 42 H 1.08999 * 109.57500 * 283.24043 * 27 21 20 43 43 H 1.08998 * 109.57738 * 43.62847 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.5874 -2.5549 -0.8613 11 6 0.4493 -2.6569 1.3115 12 6 0.5470 -4.1556 1.6633 13 6 1.3990 -4.7775 0.5361 14 7 2.1970 -3.6443 0.0014 15 6 2.6472 -3.9152 -1.2782 16 7 1.7882 -4.1347 -2.2625 17 6 2.2050 -4.3940 -3.4887 18 7 3.4800 -4.4528 -3.7964 19 6 4.4236 -4.2397 -2.8690 20 16 6.1754 -4.2460 -2.9777 21 6 6.3587 -3.8801 -1.2701 22 6 5.1742 -3.7615 -0.6684 23 6 4.0376 -3.9627 -1.5593 24 6 5.0144 -3.4461 0.8132 25 6 6.3404 -3.7239 1.5233 26 6 7.4698 -3.0136 0.7707 27 6 7.6959 -3.7203 -0.5680 28 1 -0.4849 0.8401 -0.0004 29 1 0.8936 -2.0526 2.1024 30 1 -0.5911 -2.3718 1.1553 31 1 1.0393 -4.2869 2.6269 32 1 -0.4454 -4.6061 1.6798 33 1 0.7570 -5.1908 -0.2417 34 1 2.0560 -5.5490 0.9377 35 1 1.4726 -4.5676 -4.2633 36 1 4.7471 -2.3965 0.9364 37 1 4.2333 -4.0761 1.2386 38 1 6.2918 -3.3495 2.5458 39 1 6.5287 -4.7974 1.5368 40 1 7.1926 -1.9745 0.5929 41 1 8.3835 -3.0510 1.3639 42 1 8.1362 -4.7020 -0.3931 43 1 8.3648 -3.1231 -1.1877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048346080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:05 Heat of formation + Delta-G solvation = 49.832550 kcal Electronic energy + Delta-G solvation = -26794.117912 eV Core-core repulsion = 23350.345480 eV Total energy + Delta-G solvation = -3443.772431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28364 -39.65321 -39.26329 -35.20910 -35.06793 -34.37894 -31.99652 -31.43494 -30.22670 -29.68502 -26.46820 -25.91176 -25.33477 -23.59561 -22.72228 -22.10370 -21.55609 -19.79065 -19.02388 -18.89757 -18.05534 -17.55189 -16.72752 -16.69761 -16.25961 -15.81717 -15.72445 -15.21182 -14.89623 -14.74782 -14.53991 -14.15996 -14.02264 -13.71346 -13.61131 -13.46976 -13.18489 -13.12178 -12.81474 -12.65318 -12.50953 -12.33076 -12.28043 -12.11967 -11.89371 -11.64666 -11.50382 -11.37725 -11.23600 -11.19119 -10.94866 -10.58783 -10.41703 -9.80200 -9.56323 -8.93391 -8.19567 -6.26694 -0.60584 -0.22544 0.07762 0.81498 1.13360 1.34047 1.35558 1.45577 2.34410 2.56862 2.73614 3.12380 3.17780 3.40119 3.45854 3.68841 3.96109 3.99789 4.10964 4.17138 4.18698 4.27622 4.38491 4.41650 4.57086 4.65514 4.73528 4.77124 4.87466 4.95507 5.02068 5.05113 5.07979 5.16951 5.19110 5.27776 5.32300 5.35222 5.36034 5.53575 5.60958 5.64175 5.69692 5.80346 5.97476 6.30032 6.35027 6.80922 6.97660 7.39692 8.89917 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.005741 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.091529 B = 4876.208165 C = 5452.422832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.051 0.949 9 C 0.215 3.785 10 H -0.007 1.007 11 C -0.089 4.089 12 C -0.113 4.113 13 C 0.040 3.960 14 N -0.463 5.463 15 C 0.407 3.593 16 N -0.576 5.576 17 C 0.309 3.691 18 N -0.515 5.515 19 C 0.059 3.941 20 S 0.179 5.821 21 C -0.177 4.177 22 C -0.064 4.064 23 C -0.169 4.169 24 C -0.046 4.046 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.040 4.040 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.093 0.907 35 H 0.228 0.772 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.935 -10.559 1.625 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.110 3.890 10 H 0.011 0.989 11 C -0.128 4.128 12 C -0.151 4.151 13 C -0.086 4.086 14 N -0.187 5.187 15 C 0.162 3.838 16 N -0.296 5.296 17 C 0.016 3.984 18 N -0.232 5.232 19 C -0.191 4.191 20 S 0.440 5.560 21 C -0.292 4.292 22 C -0.075 4.075 23 C -0.184 4.184 24 C -0.085 4.085 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.244 0.756 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.658 -10.757 0.007 18.181 hybrid contribution -1.778 1.516 0.543 2.399 sum 12.879 -9.241 0.550 15.861 Atomic orbital electron populations 1.70066 1.06964 1.27353 1.51149 1.25584 0.95604 1.01928 0.95001 0.85710 0.79267 0.79887 0.77809 1.21291 1.20250 1.18725 1.21155 0.92807 0.90647 1.50458 0.93100 1.20113 0.88161 0.86808 0.93912 0.98945 1.22033 0.98586 0.94719 0.97483 1.22333 0.99594 0.94971 0.98163 1.23173 0.95344 0.92896 0.97179 1.63545 1.36520 1.05999 1.12626 1.20602 0.88505 0.84363 0.90365 1.68459 1.41074 1.17155 1.02878 1.25292 0.90632 0.90063 0.92397 1.68158 1.01750 1.18525 1.34794 1.24141 1.01909 1.00964 0.92109 1.83562 0.91428 1.74394 1.06651 1.24989 0.99968 1.08252 0.96031 1.20372 0.88782 1.00717 0.97607 1.20663 0.95191 1.07458 0.95068 1.20513 0.99014 1.01399 0.87564 1.21614 0.92950 1.01412 0.99307 1.21612 0.99771 0.98923 0.95079 1.20588 0.88723 1.03141 0.95499 0.92909 0.93484 0.94066 0.89646 0.90417 0.94047 0.88883 0.75564 0.92428 0.90273 0.90207 0.90662 0.92898 0.88027 0.87586 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 12.61 21.45 0.27 -53.02 16 2 C 0.02 1.03 5.35 84.66 0.45 1.48 16 3 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.51 -28.47 8.51 25.60 0.22 -28.25 16 8 H 0.05 2.88 7.27 -2.91 -0.02 2.86 16 9 C 0.22 10.95 2.10 44.32 0.09 11.04 16 10 H -0.01 -0.43 7.32 -2.38 -0.02 -0.44 16 11 C -0.09 -4.08 5.75 31.49 0.18 -3.90 16 12 C -0.11 -3.90 7.00 31.49 0.22 -3.68 16 13 C 0.04 1.46 6.41 86.45 0.55 2.02 16 14 N -0.46 -19.85 3.11 -666.33 -2.07 -21.92 16 15 C 0.41 17.67 5.40 133.97 0.72 18.40 16 16 N -0.58 -24.82 8.91 -196.34 -1.75 -26.57 16 17 C 0.31 11.44 12.26 180.95 2.22 13.66 16 18 N -0.51 -19.35 10.48 -196.49 -2.06 -21.41 16 19 C 0.06 2.20 7.67 84.62 0.65 2.85 16 20 S 0.18 5.00 23.18 -56.49 -1.31 3.69 16 21 C -0.18 -4.79 6.29 24.96 0.16 -4.63 16 22 C -0.06 -2.13 5.93 -18.48 -0.11 -2.24 16 23 C -0.17 -6.70 6.05 -20.15 -0.12 -6.83 16 24 C -0.05 -1.42 5.29 30.36 0.16 -1.26 16 25 C -0.12 -2.46 5.91 30.64 0.18 -2.28 16 26 C -0.11 -2.08 5.94 30.67 0.18 -1.90 16 27 C -0.04 -0.72 6.24 30.24 0.19 -0.53 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.05 2.25 7.85 -2.39 -0.02 2.23 16 30 H 0.04 2.03 8.05 -2.38 -0.02 2.01 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 1.56 7.51 -2.39 -0.02 1.54 16 34 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 35 H 0.23 6.39 8.06 -2.91 -0.02 6.37 16 36 H 0.06 2.16 7.60 -2.38 -0.02 2.14 16 37 H 0.08 2.62 7.13 -2.39 -0.02 2.60 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 42 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.89 353.53 2.08 -65.82 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.02 Total: 12.95 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.95 Total: -6.06 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -5.61 Total: -122.92 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.31 Total: 3.69 kcal Total: -67.89 2.08 -65.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048346080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.648 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds