Wall clock time and date at job start Tue Mar 31 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47242 * 2 1 4 4 N 1.46500 * 109.47002 * 119.99984 * 2 1 3 5 5 C 1.46497 * 120.00006 * 119.21568 * 4 2 1 6 6 C 1.50702 * 109.46968 * 269.99837 * 5 4 2 7 7 H 1.08004 * 119.99900 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00196 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00209 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47013 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46815 * 119.99999 * 10 8 6 13 13 H 1.48498 * 109.47234 * 239.99995 * 10 8 6 14 14 C 1.34781 * 120.00045 * 299.21003 * 4 2 1 15 15 O 1.21282 * 119.99466 * 5.31092 * 14 4 2 16 16 C 1.50696 * 120.00111 * 185.31311 * 14 4 2 17 17 C 1.50698 * 109.47149 * 177.72605 * 16 14 4 18 18 C 1.38236 * 119.99992 * 90.00120 * 17 16 14 19 19 C 1.38234 * 119.99959 * 179.72671 * 18 17 16 20 20 C 1.38236 * 119.99933 * 0.24933 * 19 18 17 21 21 C 1.50701 * 119.99947 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.46794 * 90.00248 * 21 20 19 23 23 F 1.39898 * 109.47286 * 210.00646 * 21 20 19 24 24 F 1.39902 * 109.47078 * 330.00424 * 21 20 19 25 25 C 1.38237 * 119.99850 * 0.02894 * 20 19 18 26 26 C 1.38227 * 120.00354 * 359.95166 * 25 20 19 27 27 H 1.08997 * 109.47471 * 306.61815 * 1 2 3 28 28 H 1.09003 * 109.46870 * 66.61623 * 1 2 3 29 29 H 1.08999 * 109.47338 * 186.61311 * 1 2 3 30 30 H 1.08999 * 109.47434 * 240.00034 * 2 1 3 31 31 H 1.08998 * 109.47485 * 173.88651 * 3 2 1 32 32 H 1.09000 * 109.47591 * 293.88917 * 3 2 1 33 33 H 1.08999 * 109.47051 * 53.88631 * 3 2 1 34 34 H 1.09000 * 109.47441 * 29.99904 * 5 4 2 35 35 H 1.08997 * 109.47474 * 150.00236 * 5 4 2 36 36 H 0.97002 * 120.00717 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47459 * 57.72264 * 16 14 4 38 38 H 1.09001 * 109.46961 * 297.72495 * 16 14 4 39 39 H 1.08001 * 120.00070 * 359.97438 * 18 17 16 40 40 H 1.08002 * 119.99818 * 180.27315 * 19 18 17 41 41 H 1.07997 * 119.99394 * 179.97438 * 25 20 19 42 42 H 1.08001 * 120.00080 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8463 -1.8917 1.0618 6 6 1.9610 -3.1107 1.0270 7 1 0.8888 -3.0017 1.0983 8 6 2.5197 -4.3652 0.9042 9 7 3.8252 -4.4980 0.8179 10 14 1.4223 -5.8763 0.8618 11 1 0.0016 -5.4597 0.9756 12 1 1.6246 -6.5991 -0.4196 13 1 1.7684 -6.7715 1.9950 14 6 1.7059 -0.2209 2.4203 15 8 0.9428 0.7149 2.5340 16 6 2.3047 -0.8585 3.6474 17 6 1.8420 -0.1171 4.8752 18 6 0.6836 -0.5057 5.5216 19 6 0.2622 0.1708 6.6511 20 6 0.9966 1.2390 7.1312 21 6 0.5370 1.9768 8.3622 22 9 1.0973 1.3829 9.4982 23 9 0.9453 3.3127 8.2849 24 9 -0.8583 1.9198 8.4463 25 6 2.1520 1.6311 6.4814 26 6 2.5736 0.9545 5.3522 27 1 -0.3634 0.6129 0.8248 28 1 -0.3633 0.4079 -0.9433 29 1 -0.3634 -1.0208 0.1183 30 1 1.8934 -0.5138 -0.8900 31 1 3.1245 1.4445 0.1094 32 1 1.7688 1.9239 -0.9396 33 1 1.5901 1.9870 0.8302 34 1 3.4223 -1.8345 0.1383 35 1 3.5265 -1.9609 1.9107 36 1 4.2184 -5.3806 0.7319 37 1 3.3921 -0.8156 3.5853 38 1 1.9850 -1.8987 3.7091 39 1 0.1098 -1.3402 5.1465 40 1 -0.6405 -0.1356 7.1587 41 1 2.7255 2.4659 6.8563 42 1 3.4765 1.2606 4.8448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050518394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:08 Heat of formation + Delta-G solvation = -173.742637 kcal Electronic energy + Delta-G solvation = -28295.332079 eV Core-core repulsion = 23824.962337 eV Total energy + Delta-G solvation = -4470.369742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.22060 -47.73732 -47.68643 -39.93089 -38.85021 -35.47433 -33.66058 -32.87718 -31.52319 -31.07279 -28.52790 -27.01509 -26.64548 -25.01653 -22.98802 -22.90508 -22.03321 -20.85849 -18.57060 -18.48672 -18.41761 -18.11160 -16.71968 -16.06697 -15.91414 -15.42714 -15.00702 -14.62117 -14.53082 -14.52437 -14.44017 -14.17957 -14.14186 -13.93223 -13.85154 -13.70098 -13.41244 -12.98070 -12.80605 -12.60813 -12.41342 -12.16596 -11.88826 -11.87084 -11.53972 -11.38753 -11.18691 -11.05811 -10.97552 -10.95666 -10.66167 -10.44971 -10.14520 -9.75766 -9.14906 -9.00808 -8.74704 -8.59202 -7.75801 -6.25420 -4.33227 0.96557 1.33629 2.61993 3.16508 3.25678 3.27919 3.35777 3.45953 3.68595 3.95332 3.98403 4.28015 4.38877 4.80492 4.84749 4.88197 5.07724 5.26341 5.35897 5.37500 5.58196 5.64518 5.67447 5.72464 5.82456 5.97954 6.04931 6.11939 6.17028 6.17957 6.23913 6.31935 6.43036 6.62162 6.69250 6.74862 6.80837 6.83935 7.10963 7.53078 7.70418 7.98437 8.30418 8.73259 8.97345 9.35705 10.81080 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.003215 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.497635 B = 8707.081282 C = 9764.569604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 C -0.164 4.164 4 N -0.592 5.592 5 C 0.235 3.765 6 C -0.538 4.538 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.523 3.477 15 O -0.562 6.562 16 C -0.110 4.110 17 C -0.014 4.014 18 C -0.105 4.105 19 C -0.070 4.070 20 C -0.196 4.196 21 C 0.510 3.490 22 F -0.180 7.180 23 F -0.180 7.180 24 F -0.179 7.179 25 C -0.071 4.071 26 C -0.110 4.110 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 10.058 9.332 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.323 5.323 5 C 0.115 3.885 6 C -0.577 4.577 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.311 3.689 15 O -0.443 6.443 16 C -0.149 4.149 17 C -0.014 4.014 18 C -0.123 4.123 19 C -0.088 4.088 20 C -0.197 4.197 21 C 0.456 3.544 22 F -0.161 7.161 23 F -0.161 7.161 24 F -0.161 7.161 25 C -0.089 4.089 26 C -0.128 4.128 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.751 10.408 9.371 14.273 hybrid contribution -0.495 -1.019 0.022 1.133 sum -3.247 9.390 9.393 13.672 Atomic orbital electron populations 1.22166 0.95631 1.02570 1.01713 1.20819 0.94279 0.92177 0.88182 1.22182 1.00809 0.97025 1.02210 1.48323 1.51283 1.28530 1.04130 1.19489 0.90070 0.80429 0.98496 1.21543 0.93845 0.90730 1.51551 0.91979 1.24938 0.95029 0.99079 0.94699 1.69919 1.09735 1.23969 1.49276 0.86489 0.80835 0.82637 0.77839 1.19654 1.20835 1.20780 1.20067 0.81298 0.83046 0.84467 1.90578 1.36756 1.30188 1.86817 1.20821 1.02551 1.01561 0.89991 1.19803 0.93538 0.93861 0.94216 1.21054 0.96060 1.00455 0.94772 1.20841 0.98578 0.93389 0.96004 1.19843 1.00759 1.01509 0.97595 1.18358 0.74895 0.77185 0.83976 1.93211 1.85117 1.83686 1.54123 1.93174 1.90273 1.36193 1.96467 1.93179 1.30001 1.96200 1.96689 1.20807 0.94293 0.98863 0.94947 1.20995 1.00656 0.95255 0.95891 0.90838 0.93224 0.92451 0.89948 0.93139 0.92672 0.91001 0.94695 0.94341 0.92519 0.87956 0.86502 0.84796 0.85035 0.85087 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.01 37.16 0.33 -2.46 16 2 C 0.15 2.64 3.28 -67.93 -0.22 2.41 16 3 C -0.16 -2.56 9.01 37.16 0.33 -2.22 16 4 N -0.59 -11.52 2.41 -167.47 -0.40 -11.93 16 5 C 0.24 5.19 5.00 -5.19 -0.03 5.17 16 6 C -0.54 -13.21 9.39 -34.44 -0.32 -13.54 16 7 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 8 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -23.52 13.29 55.43 0.74 -22.79 16 10 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 14 C 0.52 9.83 7.07 -10.99 -0.08 9.75 16 15 O -0.56 -11.33 12.42 5.56 0.07 -11.26 16 16 C -0.11 -1.78 4.32 -29.04 -0.13 -1.90 16 17 C -0.01 -0.20 4.37 -104.62 -0.46 -0.66 16 18 C -0.11 -1.48 9.70 -39.58 -0.38 -1.86 16 19 C -0.07 -0.90 9.40 -39.58 -0.37 -1.27 16 20 C -0.20 -2.50 5.45 -104.62 -0.57 -3.07 16 21 C 0.51 6.16 3.36 36.01 0.12 6.28 16 22 F -0.18 -2.18 17.30 2.25 0.04 -2.14 16 23 F -0.18 -2.17 16.46 2.25 0.04 -2.14 16 24 F -0.18 -2.20 16.46 2.25 0.04 -2.17 16 25 C -0.07 -0.88 9.40 -39.59 -0.37 -1.25 16 26 C -0.11 -1.46 9.70 -39.58 -0.38 -1.84 16 27 H 0.07 1.35 6.27 -51.93 -0.33 1.03 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.46 7.79 -51.93 -0.40 1.05 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.23 6.47 -51.93 -0.34 0.89 16 34 H 0.03 0.82 7.91 -51.93 -0.41 0.41 16 35 H 0.04 0.86 6.38 -51.93 -0.33 0.53 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.10 1.53 7.42 -51.93 -0.39 1.15 16 38 H 0.12 1.98 8.04 -51.93 -0.42 1.57 16 39 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.13 1.42 7.61 -52.49 -0.40 1.03 16 41 H 0.13 1.34 7.60 -52.49 -0.40 0.94 16 42 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -27.09 363.43 -7.14 -34.24 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.49 Total: 2.84 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.62 Total: -4.90 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.33 Total: -34.71 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.09 -7.14 -34.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050518394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.507 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds